ライフサイエンスコーパス: pairwise

1 The pairwise addition of parahydrogen in aqueous media by he

2 well described by computer simulations using pairwise additive long-range repulsive interactions, dem

3 Patients' first-degree relatives and pairwise age- and sex-matched controls underwent a compr

4 To assess pairwise agreement between BPE levels on CE spectral mam

5 ICCs were 0.45-0.90 for pairwise agreement between sequences while fixing manufa

6 For construct validity, pairwise agreement was assessed.

7 UDN was lower with dermoscopic images (mean pairwise agreement, 0.53 for clinical images and 0.50 fo

8 A faster intra-sequence local pairwise alignment implementation is described and bench

9 ECs, a Windows based graphical tool, employs pairwise alignment of sliding windows and can perform (i

10 First, for each of all types of local pairwise alignments (PWAs) and some typical types of loc

11 iple sequence alignment (MSA) implied by the pairwise alignments between the query model (PSSM, HMM)

12 f time-dependent gap length distributions in pairwise alignments, and current approaches for extendin

13 tic variation, derived from a matrix of mean pairwise allele frequency differences between GWAS, and

14 ffold and synthesized to accurately evaluate pairwise amino acid interactions in an antiparallel beta

15 Pairwise analysis of genotype patterns revealed that hom

16 g protein coffin Adf1, we examined how their pairwise and collective interactions with actin filament

17 nd spatial reactivation, measured using both pairwise and ensemble measures, was more structured for

18 how how recurrent network structure produces pairwise and higher-order correlated activity, and how n

19 eight newly sequenced genomes, and used both pairwise and model-based comparisons to investigate the

20 on secondary structure; and 3) comparison of pairwise and multiple RNA secondary structures.

21 We did a systematic review with pairwise and network meta-analyses of efficacy and toler

22 We did pairwise and network meta-analyses to produce odds ratio

23 ed estimates for relative effectiveness from pairwise and network meta-analysis of comparative studie

24 EXTRACTION: Extracted data were analyzed by pairwise and network meta-analysis.

25 d using 4C-seq data sets that identify known pairwise and novel tri-loci interactions involving the T

26 Random-effects, standard pairwise, and network meta-analyses were performed to sy

27 filter this effect, we computed and compared pairwise approaches with a systems-based method, which c

28 f the helical hairpin and/or compromised its pairwise arrangement with the companion subdomain in eac

29 Pairwise assay comparisons were also performed using 245

30 ssues, we developed a protocol for multiplex pairwise assembly of oligos from array-synthesized oligo

31 feature association measurement (BUFAM) for pairwise association analysis, and relational dependency

32 bias in lung cancer and found a significant pairwise association between L1 insertions and heterochr

33 sting methodologies can test for significant pairwise associations between two genomic intervals; how

34 In particular a very large number of pairwise associations can arise indirectly through other

35 Two of three pairwise avian malaria co-occurrences were strongly nega

36 -hoc Mann-Whitney U-tests showed significant pairwise between-cluster differences in two or more of t

37 2 seconds, and SIS, 69%, with no significant pairwise between-group differences (ASAP vs DEUCC: WMFT,

38 hion, HerA-NurA harbors a highly coordinated pairwise binding mechanism and enables the translocation

39 these proteins was examined individually and pairwise by using the Ripley K function, a type of neare

40 To perform a pairwise, case-control study with 1:1 matching, 44 of th

41 ing SAGA methods cannot integrate inherently pairwise chromatin conformation data.

42 echniques have highlighted the importance of pairwise chromatin interactions in gene regulation.

43 l-stromal co-expression networks composed of pairwise co-expression relationships between mRNA levels

44 Pairwise coefficients of fixation demonstrate that the H

45 es a versatile analysis and visualization of pairwise coevolution of amino acid residues.

46 imated the genetic correlations between each pairwise combination of 2469 transcripts that are highly

47 ulating the peak-to-peak resolution for each pairwise combination of amino acid ions.

48 and its effects on growth were suppressed by pairwise combination with the DNA binding ligand Hoechst

49 ompendium of interaction predictions for all pairwise combinations among 100 antibiotics.

50 ntative protein target, we identify specific pairwise combinations of modifications that result in hi

51 of 1,000 small molecules involves 1 million pairwise combinations.

52 ulture assays with all possible heterologous pairwise combinations.

53 ght chain of an antibody, either alone or in pairwise combinations.

54 of the interaction between ES and EG in two pairwise combinations: iES vs EG and cured ES (cES, wher

55 for the limited convergence observed between pairwise communities and suggest that rare species and o

56 expressed transcripts were detected based on pairwise comparison in the three libraries (0_DAP, 7_DAP

57 Here, we perform a pairwise comparison of 90,000 putative binding pockets d

58 ion and quality of genome assemblies through pairwise comparison of k-mers present in both input read

59 hput ranking of whole docking simulations by pairwise comparison to experimental outputs.

60 classification (classification ranking), by pairwise comparison using the Elo rating method (compari

61 Pairwise comparison with each commercial system serving

62 d from -0.286 to 0.478) was observed through pairwise comparison within different kits.

63 areas than in urban areas (p<0.0001 for each pairwise comparison).

64 pressed feature is up or down regulated in a pairwise comparison.

65 rarchical logistic regression modeling using pairwise comparisons (overweight, BMI: 25-29.9; mildly o

66 Pairwise comparisons (ranibizumab, 0.5 mg, vs sham and l

67 rrelation and variability were assessed with pairwise comparisons across all reagent-platform combina

68 By conducting three pairwise comparisons among European taurine, African tau

69 Using robust, pairwise comparisons and a global dataset, we show that

70 ne due to multiple testing involving several pairwise comparisons and the second due to falsely decla

71 test recurrence score (ODxRS), and post hoc pairwise comparisons assessed ODxRS means by using imagi

72 Pairwise comparisons between the 3 treatment groups were

73 Bonnferoni analysis was used to assess pairwise comparisons between the groups.

74 ces were confirmed in cage studies where, in pairwise comparisons in the absence of other floral cues

75 The hazard ratios associated with all pairwise comparisons included 1 for all key cardiovascul

76 Pairwise comparisons indicated: (1) the mean melanopsin-

77 All pairwise comparisons of beta diversity values between gr

78 Pairwise comparisons of density estimations at different

79 Pairwise comparisons of median price per ounce on the ba

80 The TER is fully supported by the pairwise comparisons of MERs using 106 manually segmente

81 Pairwise comparisons of research versus control had 90%

82 In pairwise comparisons of the four genotypes, the number o

83 Planned pairwise comparisons revealed that from months 4 to 12,

84 Pairwise comparisons showed that the diagnostic performa

85 Adjusted pairwise comparisons showed that the relative annual inc

86 Pairwise comparisons showed that the scores from the 28-

87 Pairwise comparisons were made using unadjusted Cox Prop

88 and 8.6 letters, respectively (P > 0.10, for pairwise comparisons).

89 verse remodeling (n = 296, 58%) (P < .001 in pairwise comparisons).

90 , 0.65; 95% CI, 0.63-0.66) (P < 0.01 for all pairwise comparisons).

91 In adjusted pairwise comparisons, the annual rate of increase was gr

92 ient samples showed good correlation in most pairwise comparisons, with some showing poorer correlati

93 ntial expression for biologically meaningful pairwise comparisons-estimated using consistent methodol

94 soform switches exist and these are based on pairwise comparisons.

95 y means of logistic regression analysis with pairwise comparisons.

96 p<0.05) were followed up via Tukey-corrected pairwise comparisons.

97 sful, these approaches are mostly limited to pairwise comparisons.

98 7 to 9 months of follow-up data to 1 or more pairwise comparisons.

99 te matter indices was conducted, followed by pairwise comparisons.

100 ding a general framework for making multiple pairwise comparisons.

101 P = .05 and 99.2% CIs adjusted for multiple pairwise comparisons.

102 ng ANCOVA F tests and Tukey-Kramer-corrected pairwise comparisons.At 24 mo, the LNS-LNS group had sig

103 The pairwise concordance between two methods was 90-92% inde

104 with population cycles was tightly linked to pairwise consumer-resource interactions and studied via

105 In many-body systems governed by pairwise contact interactions, a wide range of observabl

106 Recently, global mapping of pairwise contacts showed that loops anchoring topologica

107 rimarily driven by nested, possibly dynamic, pairwise contacts.

108 es to analyze individual residue and residue-pairwise contributions to the MM-GBSA binding free energ

109 single link for a long time to ensure strong pairwise coordination before moving to a next pair of in

110 In addition, 25 miRNAs were pairwise correlated specifically in the depressed suicid

111 ociated with eGFRcr, and six of these showed pairwise correlation (r>/=0.50) with established kidney

112 methods using summary-level data require the pairwise correlation coefficients ([Formula: see text])

113 om indirect interactions more precisely than pairwise correlation.

114 Here, we studied the relationship between pairwise correlations and firing rates in recurrently co

115 ing, a positive relationship emerged between pairwise correlations and firing rates.

116 ons was required for behavioral responses to pairwise correlations and was predictive of those respon

117 Additionally, we found that distinct pairwise correlations between ICa parameters contributed

118 We find that the pattern of pairwise correlations between neurons has a strength tha

119 These results reveal how neural responses to pairwise correlations drive visual behavior in this cano

120 yed stimuli to directly measure responses to pairwise correlations in Drosophila's EMD neurons, T4 an

121 Pairwise correlations showed that AGD at birth varied ne

122 y, spiking patterns are often quantified via pairwise correlations, or the probability that two cells

123 how here that it cannot be explained by only pairwise correlations.

124 Pairwise coupled VO2 oscillator circuits have been analy

125 Careful analysis reveals that effective pairwise couplings in inferred Potts Hamiltonians depend

126 Conservation of RNA base pairing induces pairwise covariations in sequence alignments.

127 active, cysteine-less NorM-NG and conducted pairwise cysteine mutagenesis on this variant.

128 terdependence among the NUDIX hydrolases, we pairwise deplete them generating an epistatic interactio

129 optimal proxy of adiposity gain (P < 0.0001, pairwise difference).Weight- and length-based indexes ar

130 ical CD271(-) or CD271(+) cells showed large pairwise differences in copy number (28%-48%).

131 s and pseudopotentials agree very well, with pairwise differences that are comparable to those betwee

132 s and provided almost identical estimates of pairwise differentiation.

133 yses, CAFE can also be used to visualize the pairwise dissimilarity measures, including dendrograms,

134 utants, R268C and E315C, are used to measure pairwise distance distributions with mean values ranging

135 ification step by testing the consistency of pairwise distance estimates, which can be problematic in

136 This method recognizes that pairwise distance matrix between observations is suffici

137 e FFT enables global docking, accounting for pairwise distance restraints using penalty terms in the

138 n of attraction or repulsion, accounting for pairwise distance restraints, construction of homo-multi

139 metrics (i.e., phylogenetic diversity, mean pairwise distance, mean nearest taxon distance, and the

140 oop conformations constructed by calculating pairwise distances among all experimentally determined f

141 s on a graph, we analyze the distribution of pairwise distances around the maximum and exploit its de

142 neighbor distance (F, G and J-functions) and pairwise distances between points (Ripley's K function,

143 We classified the human miRNAs according to pairwise distances between their networks of transient s

144 FR assembles into oligomers, as indicated by pairwise distances of receptor-bound fluorophore-conjuga

145 ncluding structure prediction from predicted pairwise distances.

146 ; however, these had only modestly increased pairwise diversity (mean 17.5 single nucleotide variants

147 Applying a systematic pairwise drug combination screen we observed a highly po

148 onal drugs as either single agents or in 768 pairwise drug combinations in TNBC cell lines to identif

149 tributions allow one to image the explicitly pairwise electronic behavior of bonds and lone pairs.

150 we used a linear mixed model (LMM) including pairwise empirical KCs to account for familial relatedne

151 mutational scan-revealing the individual and pairwise epistatic effects of every mutation to our mode

152 opes between 26D1 and H16.V5 was shown using pairwise epitope mapping, and their binding difference i

153 ent limits of agreement were calculated in a pairwise fashion for all reviewers and the model.

154 ype transporter, combined with analyzing the pairwise forces between individual residues, unravels th

155 However, haplotypes rather than pairwise [Formula: see text], are the true biological re

156 The pairwise-generated, mutually reactive species then parti

157 We measured pairwise genetic correlations (rG) between PR phenotypes

158 We measured pairwise genetic correlations (rG) between the ARIC and

159 We first calculated pairwise genetic distances between the subjects' nasal w

160 current prediction tools accurately estimate pairwise genetic relationships up to the ninth degree.

161 ork was recently developed for probabilistic pairwise global comparison of biological networks, and i

162 logical networks, and it has been applied to pairwise global network alignment, where the framework w

163 d (2)H NMR experiments, revealing an unusual pairwise H2/D2 exchange process that synchronously invol

164 all-molecule drug pairs directed against our pairwise hits and showed that they exerted synergistic a

165 PHIP) transfer NMR studies revealed that the pairwise hydrogenation of nitriles proceeded through a C

166 w IBD networks, constructed from patterns of pairwise IBD between individuals, and principles from gr

167 Results Pairwise ICCs were 0.67-0.82 and 0.62-0.83 for agreement

168 and gene conversion, and efficiently outputs pairwise identical-by-descent sharing data.

169 genome), at 100%, 100%, and 96.7% consensus pairwise identity, respectively; de novo assembly of the

170 ising 99.9% of the genome at 98.6% consensus pairwise identity.

171 A operons and then examining their positions pairwise in live cells by epifluorescence microscopy, we

172 -dimensional convolutional transformation of pairwise information including output of the first resid

173 Pairwise information transfer strengths also were nearly

174 First, we show that pairwise integration of primary omics data reveals regul

175 ian medicinal plant Lychnophora ericoides by pairwise inter-kingdom interactions in order to correlat

176 In the screening analysis, all pairwise interactions among 301,547 SNPs were evaluated,

177 Even when only pairwise interactions are considered, the size of the se

178 All pairwise interactions are typically represented by a sin

179 while a community becomes more sensitive to pairwise interactions as its number of species increases

180 screening for antagonism among all possible pairwise interactions between 67 bacterial species from

181 approach and develop a model that considers pairwise interactions between molecular chaperones and d

182 ommunities is the non-random distribution of pairwise interactions between organisms of different tro

183 n a range of positive and negative metabolic pairwise interactions between species.

184 nanotubes, particularly emphasising how the pairwise interactions between the catalysts, reactants,

185 Pairwise interactions between the oligomers were investi

186 In ultracold atomic gases, control over pairwise interactions enables us to investigate scatteri

187 to accelerate the computation of short-range pairwise interactions in an extremely sparse three-dimen

188 This analysis suggests stronger pairwise interactions in the heterodimer than in the two

189 Therefore, while pairwise interactions lead to sensitivity to the additio

190 We investigated how 106 variables affect the pairwise interactions of over 10 million 5-kb DNA segmen

191 ntify allosteric pathways, connected sets of pairwise interactions that are responsible for propagati

192 idual receives additive fitness effects from pairwise interactions with each species in the community

193 order interactions are completely defined by pairwise interactions, facilitating empirical parameteri

194 well predicted only with taking into account pairwise interactions.

195 pairs accounted for half of the significant pairwise interactions.

196 Pairwise interplays between RNAs involve both cooperatio

197 Analysis of pairwise intersample distances quantifies the associatio

198 e library for local, global, and semi-global pairwise intra-sequence alignments and improves the perf

199 by NORK itself, which was also confirmed by pairwise kinase assays.

200 nts (PCs) robust to familial relatedness and pairwise kinship coefficients (KCs) robust to population

201 The pairwise ligand distances correspond well with the predi

202 Pairwise local alignment is an indispensable tool for mo

203 Whether pairwise loops synergize to form higher-order structures

204 Our general approach, which employs a pairwise maximum entropy model to infer couplings betwee

205 formance of the groups was compared with the pairwise McNemar test.

206 p, this study introduces two new genome-wide pairwise measures of microbe-microbe interaction.

207 dentified multiple previously unreported non-pairwise MEGS in multiple cancer types.

208 Pairwise meta-analyses for fall-related hospitalizations

209 We analysed data by pairwise meta-analyses with a random-effects model and b

210 Pairwise meta-analysis and network meta-analysis were co

211 30 SRs with pairwise meta-analysis were included.

212 At pairwise meta-regression analysis with either study orig

213 omorbidity relations in the BDMM compared to pairwise methods implies that biologically meaningful co

214 relations may be less frequent than earlier pairwise methods suggested.

215 rformed in 63% of SRs, mostly using standard pairwise methods.

216 e-disease networks are usually identified by pairwise methods.

217 ation fails to qualitatively capture diverse pairwise microbial interactions.

218 that Ce3Mn8 exhibits both the combination of pairwise Mn(III)2 ferromagnetic and antiferromagnetic ex

219 Human islets were exposed in a pairwise model simulating high-density encapsulation to

220 on in many-species communities, suggest that pairwise modeling will often fail to predict microbial d

221 Pairwise models are commonly used to describe many-speci

222 ltonians used to generate MSA are not simple pairwise models due to the competition between the folds

223 mediated interactions, and attempt to derive pairwise models.

224 enge then is to compute the distance between pairwise MS/MS runs consisting of thousands of spectra.

225 ensionality-reduction technique to include a pairwise mutation distance and P value significance test

226 Mutant cycle analysis applied to single and pairwise mutations reveals that alphaAsp-138 is energeti

227 Pairwise mutual adjustment of the 9 measures left the as

228 available currently and the majority of the pairwise network alignment (PNA) algorithms do not have

229 sensitive and rapid algorithm, for measuring pairwise neuronal similarity.

230 he phylogenetic structures as represented by pairwise nucleotide differences in the promoter regions

231 RFs of each CnClm are obtained by pairwise optimization of the normal distribution's fit t

232 ments in the OMA algorithm: (i) refining the pairwise orthology inference step to account for same-sp

233 Moreover, eggNOG now provides pairwise orthology relationships within OGs based on ana

234 ent rates, and (ii) minimizing errors in the pairwise orthology verification step by testing the cons

235 eled as the combination of a sparse graph of pairwise partial correlations representing local interac

236 dentify interacting 16p11.2 genes, we used a pairwise partial loss of function antisense screen for e

237 variants phased in a single block) with high pairwise phasing accuracy ( approximately 98% across chr

238 ls context-dependent information flows using pairwise phenotypic comparative analyses of protein-prot

239 , while the standardized effect size of mean pairwise phylogenetic distances (MPD) and phylogenetic d

240 unterions on polymer backbones can form many pairwise physical cross-links, leading to microgel-like

241 correlation, as well as to the simple London pairwise picture.

242 re, we show through a meta-analysis of 1,215 pairwise plant interactions between 274 vascular plant s

243 We measured net pairwise plant-soil feedbacks for two grassland plant sp

244 Pairwise post hoc tests were conducted using the Mann-Wh

245 Each pairwise potential has an associated logic function that

246 e first residual network, EC information and pairwise potential.

247 r of the chemical or biological system using pairwise potentials coming from experimental data or ab

248 is constructed as linear combination of the pairwise potentials, where the "coefficients" of the pot

249 arget LP structures, and infer the effective pairwise Potts Hamiltonians from those MSA.

250 he ability to acquire a comprehensive set of pairwise proximities between components would satisfy an

251 of the 13q22.1 locus showed that rs9600103 (pairwise r(2) = 0.98 with rs11841589) is located in a re

252 These results suggest that the use of pairwise rankings and a continuous severity score, such

253 s anchored at highly expressed genes support pairwise, rather than hub-like, chromosomal topology at

254 We also introduce a pairwise read mapping format and a graphical fragment as

255 Percent agreement (fraction of pairwise reader combinations with concordant readings) w

256 ntegrated LTR retrotransposons consisting of pairwise recombination products produced in a process co

257 n each game made up of 18 players engaged in pairwise relationship with their neighbors.

258 This finding is based on correlations of pairwise relationships and regression modeling of total

259 , yet many studies have focused on measuring pairwise relationships between members of a larger popul

260 oerce trophic interaction modifications into pairwise relationships.

261 Ceria is also shown to be an efficient pairwise replacement catalyst for propene.

262 The recombination occurs pairwise, resembling the formation of recombinant retrov

263 However, ignoring some pairwise residue interactions can lead to a change in th

264 We found a pattern of pairwise rsc during WM maintenance indicative of stronge

265 ot meet this objective as they are guided by pairwise scores that do not utilize the entire functiona

266 y of residue packing into patterns of simple pairwise secondary structure interactions between a sing

267 A 3000-fold increase in the pairwise selectivity, relative to the monometallic Pt, w

268 aps were constructed based on calculation of pairwise separation factors and identification of critic

269 f its homologous template proteins and their pairwise sequence alignment is a key step in protein com

270 ween query sequences and database hits using pairwise sequence alignment.

271 e heuristics, however, usually only apply to pairwise sequence comparison and do not examine clusters

272 B sequences at the level of 90%, 50% and 30% pairwise sequence identity.

273 We applied the pairwise sequentially Markovian coalescent approach on t

274 Pairwise silencing of ZAP70, SYK, or LCK showed additive

275 l 1000 Genomes non-Africans when considering pairwise similarity across the entire genome.

276 and psisearch, are much more sensitive than pairwise similarity search methods like blast and ssearc

277 es underwent whole-genome sequencing, with a pairwise single-nucleotide polymorphism (Hamming distanc

278 novo mutations is extremely low with maximum pairwise single-nucleotide polymorphisms (SNPs) ranging

279 t increased average prediction accuracy over pairwise-site for all the traits, specifically from 0.27

280 lines' performance at one site with another (pairwise-site) and at untested sites (leave-one-site-out

281 transitive competition against a backdrop of pairwise stabilising niche differences.

282 pically been studied in isolation from other pairwise stabilising processes, and thus little is known

283 rocess or automatically derived using simple pairwise statistics.

284 s approach to organize and interpret massive pairwise syntenic relationships.

285 Statistical comparisons included the Student pairwise t test and the McNemar test in 2x2 contingency

286 aditional standard of conducting an array of pairwise t tests toward more general linear modeling str

287 Several approaches were tested for pairwise target/template alignment.

288 del-based approach to additionally score all pairwise terms, and that it can be interpreted within th

289 es a systematic, quantitative description of pairwise/tertiary intragenic epistasis involving adaptiv

290 It has been observed that many pairwise tests are redundant due to correlations in thei

291 types (Kruskal-Wallis and Fisher tests), (c) pairwise tests between tumor types (Mann-Whitney U test)

292 arametric Kruskal-Wallis test, corresponding pairwise tests, and Spearman correlation.

293 the DNA-DNA force in a DNA condensate to be pairwise, the DNA condensation to be driven by electrost

294 g complementary recognition sites-that react pairwise through 1,3-dipolar cycloaddition reactions to

295 s most in societies that are based on strong pairwise ties.

296 Thus, in pairwise transfections, UL16 binding is enabled only whe

297 , and stage repeatability 'r') from computed pairwise translations and then minimizes stitching error

298 lisation of microbial community composition (Pairwise Unifrac, beta-diversity, P < 1.86e-05; P = 0.01

299 or each group based on unbiased estimates of pairwise V ST .

300 Reader pairwise weighted kappa-values for the visual assessment