ライフサイエンスコーパス: panther

1 ; also known as mountain lions, cougars, and panthers).

2 based inference, such as that implemented in PANTHER.

3 using the multiple axes of classification in PANTHER.

4 RT, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER.

5 , there have been three main improvements to PANTHER.

6 r of pathways associated with subfamilies in PANTHER.

7 The latest version of PANTHER, 10.0, includes almost 5000 new protein families

8 PANTHER 5.0 includes a number of significant improvement

9 The data and tools in PANTHER-a comprehensive, curated database of protein fam

10 how that the D. rerio pigment pattern mutant panther ablates xanthophores in embryos and adults and h

11 amples, and 205 matched CVL specimens on the Panther and m2000 platforms.

12 ic trees of gene families form the basis for PANTHER and these trees are annotated with ontology term

13 icly available without restriction at http://panther.appliedbiosystems.com.

14 s the accuracy of TBC is available at http://panther.appliedbiosystems.com/pub/tree_quality/index.jsp

15 ent protein families can be viewed at http://panther.appliedbiosystems.com/pub/tree_quality/trees.jsp

16 ber databases to join InterPro, and CATH and PANTHER are soon to be integrated.

17 n of classification information available in PANTHER, as well as significant enhancements to the anal

18 one implemented by FlyBase and the other by PANTHER at Celera Genomics.

19 t the panther population would fall below 10 panthers by 2010 was 0.098 (0.002-0.332) for the restora

20 PolyPhen2, SIFT, MutationAssessor, Panther, CADD, and Condel were used to predict each muta

21 R is publicly available on the web at http://panther.celera.com.

22 alyze genome-wide experimental data with the PANTHER classification system.

23 the InterPro suite of databases, and to make PANTHER consistent with the PIRSF database.

24 We find that panther corresponds to an orthologue of the c-fms gene,

25 The PANTHER database contains comprehensive information on t

26 The current version of the PANTHER database includes training sequences from all or

27 The PANTHER database was designed for high-throughput analys

28 The PANTHER database was designed to model evolutionary sequ

29 f the approximately 100 other species in the PANTHER database.

30 ii) an improved methodology for defining the PANTHER families and subfamilies, and for building the H

31 We describe a method, PANTHER, for relating protein sequence relationships to

32 fam protein domains and 9.4% (max 22.9%) for PANTHER gene families.

33 The Indo-pacific panther grouper (Chromileptes altiveli) is a predatory f

34 ts within one degree of capture locations of panther grouper from the United States Geological Survey

35 known estimation of the potential spread of panther grouper in the Atlantic.

36 el and is indicated as the area in which the panther grouper is most likely to become established.

37 However, unlike lionfish, the panther grouper is not yet thought to have an establishe

38 (Pterois volitans/miles), which, as for the panther grouper, is assumed to have been introduced to t

39 stanleyana were released into Florida panther habitat in southern Florida in 1995.

40 Yet the focus of PANTHER has continually shifted toward more accurate and

41 For the data analysis tools, PANTHER has expanded the number of different 'functional

42 a member of the InterPro Consortium, and the PANTHER hidden markov Models (HMMs) are distributed as p

43 iii) resources for scoring sequences against PANTHER HMMs both over the web and locally; and (iv) a n

44 there have been several new developments to PANTHER: (i) improved phylogenetic trees, explicitly rep

45 nitiative - using the estimated abundance of panthers in 1995, the year genetic restoration was initi

46 s: the PANTHER library (PANTHER/LIB) and the PANTHER index (PANTHER/X).

47 PANTHER is a freely available, comprehensive software sy

48 PANTHER is a large collection of protein families that h

49 PANTHER is a widely used online resource for comprehensi

50 PANTHER is composed of two main components: the PANTHER

51 One of the main applications of PANTHER is in accurate prediction of the functions of un

52 Second, PANTHER is now a member of the InterPro Consortium, and

53 PANTHER is now publicly available without restriction at

54 PANTHER is publicly available on the web at http://panth

55 Analysis THrough Evolutionary Relationships (PANTHER) is a comprehensive software system for inferrin

56 ion, including cross-validated prediction of PANTHER LDOs and evaluation of evolutionary divergence a

57 PANTHER/LIB is a collection of "books," each representin

58 of two main components: the PANTHER library (PANTHER/LIB) and the PANTHER index (PANTHER/X).

59 THER is composed of two main components: the PANTHER library (PANTHER/LIB) and the PANTHER index (PAN

60 sociation error rate of both the FlyBase and PANTHER methods to be <2%.

61 methods (SIFT, PolyPhen2, SNPs&GO, PhD-SNP, PANTHER, Mutation Assessor, MutPred, Condel and CAROL) a

62 an genes (as well as a few other organisms), PANTHER now also supports enrichment analysis using path

63 Finally, PANTHER now includes stable database identifiers for inf

64 of this restoration experiment and show that panther numbers increased threefold, genetic heterozygos

65 PANTHER pathways were generated using the emerging Syste

66 rotein class), and sequences are assigned to PANTHER pathways.

67 multiple, diverse source databases: Gene3D, PANTHER, Pfam, PIRSF, PRINTS, ProDom, PROSITE, SMART, SU

68 ished prediction tools: MAPP, nsSNPAnalyzer, PANTHER, PhD-SNP, PolyPhen-1, PolyPhen-2, SIFT and SNAP.

69 ationTaster, Mutation Assessor, FATHMM, LRT, PANTHER, PhD-SNP, SNAP, SNPs&GO and MutPred), 3 conserva

70 s: 0.95-1.14), suggesting an increase in the panther population of approximately 4% per year.

71 esponsible for the substantial growth of the panther population that would otherwise have been declin

72 density-dependence, the probability that the panther population would fall below 10 panthers by 2010

73 cenario, providing further evidence that the panther population would have faced a substantially high

74 ted to the observed increases in the Florida panther population.

75 Here, we describe the current PANTHER process as a whole, as well as the website tools

76 with ontology terms (Gene Ontology (GO) and PANTHER protein class), and sequences are assigned to PA

77 uracy, TIPS is being used in the large-scale PANTHER protein classification project.

78 The PANTHER (Protein ANalysis THrough Evolutionary Relations

79 The PANTHER (protein annotation through evolutionary relatio

80 PANTHER-PSEP employs a related but distinct metric based

81 PANTHER-PSEP is a new software tool for predicting non-s

82 cs and persistence of the endangered Florida panther Puma concolor coryi population and evaluated the

83 movement patterns of the endangered Florida panther (Puma concolor coryi) and to discern factors inf

84 pecific PLVA transmission has occurred among panthers (Puma concolor coryi) in Florida following the

85 The rediscovery of remnant Florida panthers (Puma concolor coryi) in southern Florida swamp

86 these genes were retrieved and linked using PANTHER((R))/Pathway Studio((R)).

87 We used the Gene Ontology, Ingenuity, KEGG, Panther, Reactome, and Biocarta databases for gene set e

88 The main goals of PANTHER remain essentially unchanged: the accurate infer

89 (KEGG), Ingenuity Pathway, Gene Ontology and PANTHER respectively.

90 PANTHER software tools allow users to classify new prote

91 d CVL specimens and that the fully automated Panther system has all the necessary features suitable f

92 Marlborough, MA) performed on the automated Panther system is a rapid and high-throughput method for

93 automated format and high throughput of the Panther system, make this system well suited for reliabl

94 Dx assay (Aptima) performed on the automated Panther system.

95 Efforts are underway to add PANTHER to the InterPro suite of databases, and to make

96 We apply PANTHER to three areas of active research.

97 Finally, the PANTHER Tree-Attribute Viewer has been implemented in Ja

98 In addition, PANTHER trees are being annotated with gene function as

99 In the 2013 release of PANTHER (v.8.0), in addition to an update of the data co

100 The PANTHER website includes a suite of tools that enable us

101 The PANTHER website, freely available at http://www.pantherd

102 movement patterns of male and female Florida panthers were a consequence of sex-specific differences

103 ility that the population will fall below 10 panthers within 100 years was 0.072 (0-0.606).

104 We developed the three-banded panther worm, Hofstenia miamia, as a new acoelomorph mod

105 PANTHER/X is an abbreviated ontology for summarizing and

106 Second, we use the PANTHER/X ontology to give a high-level representation o

107 library (PANTHER/LIB) and the PANTHER index (PANTHER/X).