ライフサイエンスコーパス: parameterize

1 the northern hardwood forest when adequately parameterized.

2 oned, 3-D reconstructed, 3-D delineated, and parameterized.

3 We leverage these data to parameterize a computational model of translation, keepi

4 These data were used to parameterize a deterministic matrix model, which allowed

5 our streams in Western Massachusetts, USA to parameterize a discrete-time population projection model

6 We then used these data to parameterize a dynamic bioclimatic envelope model, to in

7 We then parameterize a dynamic vegetation model based on these d

8 We use single-cell microscopy to parameterize a full cell-cycle model based on independen

9 dystrophy type 1, provides an opportunity to parameterize a mathematical model for repeat length evol

10 These data were used to parameterize a mathematical model that was used to predi

11 dian state of Bihar, Bangladesh and Nepal to parameterize a mathematical model.

12 6-8 months old) C57BL/6 mice were used to re-parameterize a mechanistic mathematical model of acute i

13 ure the detailed interaction rates needed to parameterize a model, and there is only a limited amount

14 g mutant phenotypes and fluorescence data to parameterize a reaction-diffusion model of the kinases P

15 dinal field study of vampire bats in Peru to parameterize a series of mechanistic transmission models

16 icroscopic rate information from the MSM, we parameterize a simple four-state kinetic model to 1) det

17 Here, we develop and parameterize a system-wide biophysical model of Cas9-bas

18 To this end, we parameterize a well-supported mathematical model using t

19 Potjans and Diesmann (2014) parameterized a four-layer, two cell type (i.e. excitato

20 diverse microenvironments, we experimentally parameterized a hybrid discrete-continuum mathematical m

21 Had subjects parameterized a single general representation, full gene

22 be a computational experimental approach for parameterizing a model of the electrical activity of a c

23 recording a cell's electrical activity, 2), parameterizing a model to the recording, 3), generating

24 Parameterizing a simple model with global N isotope data

25 side chain flexibility, FTMap/param, used to parameterize additional probes and FTDyn, for mapping en

26 the MD force fields have generally not been parameterized against unusual DNA structures, and their

27 Finally, we parameterize alleles based on a range of properties and

28 We parameterize an epidemiological game-theoretic model of

29 aspects of the statistical analysis used to parameterize an IPM using data on marked individuals.

30 lts from integrated population modelling, we parameterized an age-structured population projection ma

31 We developed and parameterized an agent-based model for two population de

32 Using observational data, we parameterized an exponential random graph model containi

33 We then look at very general approaches to parameterizing an IPM, using a wide range of statistical

34 GIS and CIGTS trial participants and used to parameterize and validate a Kalman filter model.

35 t (HBEF) in New Hampshire, USA, were used to parameterize and validate the models.

36 We parameterize and validate this model with experimental d

37 en a conventional GCM in which convection is parameterized and a "superparameterized" model in which

38 s aegypti and Aedes albopictus The model was parameterized and calibrated using the most up to date i

39 iophysical cardiac cell models were created, parameterized and validated and are able to simulate ele

40 al framework in which clonal markings can be parameterized and validated.

41 processes in global models are crude, highly parameterized, and poorly constrained, limiting the desc

42 ere used to demonstrate how the model can be parameterized, and this preliminary analysis suggests th

43 Previously developed, well-parameterized, and thoroughly-vetted models can be a gre

44 tion algorithm to automatically identify and parameterize APs from text input files.

45 veloped a general mathematical framework for parameterizing arbitrary helical structures, which reduc

46 To achieve this, coordination polyhedra are parameterized as FSBs and a simple empirical model to ev

47 Solvent quality is parameterized as intramolecular hydrogen bond strength,

48 Here, based on experiments, we parameterize ash behaviour and develop a model to predic

49 s combine behavioral economic experiments to parameterize aspects of reward-related decision-making w

50 NCE and NHE were developed and individually parameterized based on independent data sets on flux rat

51 These disabilities were parameterized based on questions from the SF-12 question

52 Parameterized based on representative indoor and adult h

53 This force field is parameterized based on the statistical distribution of t

54 ized linear model for such bimodal data that parameterizes both of these features.

55 TreeBASE, and EmpPrior-fit, written in R to parameterize branch-length distributions.

56 o domains, which we previously showed can be parameterized by a coupling free-energy term (DeltaG(X))

57 Mechanistic models, parameterized by a number of unknown parameters, are oft

58 It is parameterized by a single hyperparameter, the fraction o

59 pin-orbit interactions, the Rashba (strength parameterized by alpha) and linear Dresselhaus (beta(1))

60 ting of patient-specific mathematical models parameterized by an ex vivo assay that reverse engineers

61 tionally, we developed a mathematical model, parameterized by cell viability experiments under Niloti

62 These small clouds are parameterized by climate models, and changes in their ra

63 t be accurately reproduced by current models parameterized by daily mean temperature (T(mean)).

64 Parameterized by density functional theory (DFT) calcula

65 non-equilibrium Green's function-based model-parameterized by density functional theory calculations-

66 The potential was originally parameterized by enforcing a funneled nature for a datab

67 e use a mathematical model of photosynthesis parameterized by field data consisting of chlorophyll fl

68 The model is biologically rich, parameterized by field data, and driven by field-collect

69 tance-dependent; the spread of connectivity, parameterized by Gaussian fits to the data, was comparab

70 dynamics of these communities, which can be parameterized by growth rates, and intra- and inter-spec

71 We used computational models parameterized by in vitro experiments to illustrate the

72 cations in the ion steady-state temperature, parameterized by ion number.

73 ained to a three parameter family of shapes, parameterized by length, depth and the degree of shear.

74 ns of particles diffusing in synthetic cells parameterized by morphometric statistics are then iterat

75 SIDEpro uses energy functions that are parameterized by neural networks trained from available

76 r by using an agent based modeling framework parameterized by our field observations.

77 A population dynamics model parameterized by our measurements suggests that interact

78 ish this by using a conditional random field parameterized by random forests trained on reference pan

79 constitute an algebraic variety that can be parameterized by rational functions of the L free enzyme

80 Through simulations parameterized by real RNA-Seq data, we show that our met

81 ll preference to expedite pain, which can be parameterized by reducing the rate of the dread-discount

82 r period following the same inverse relation parameterized by system specific constants.

83 The model is parameterized by tapping several available geodatabases

84 In each case, the trade-off is parameterized by the capacity and a second channel param

85 astic properties of the probe's environment, parameterized by the frequency-dependent complex shear m

86 of the interaction between LDL and the EGL (parameterized by the height of the EGL, the depth to whi

87 This evolution in failure behavior can be parameterized by the width of the crack.

88 ulus can be perceived in two different ways, parameterized by two opposite directions from a continuo

89 mathematically identifiable (i.e., not over parameterized) by combining a novel Hodgkin-Huxley formu

90 es of these enzymes are needed to accurately parameterize C4 biochemical models of leaf CO2 exchange

91 owever, the method by which these models are parameterized can lead to questions about the validity o

92 So parameterizing CG force fields, which is both tedious an

93 We developed a thermodynamic model that parameterizes ChIP-seq coverage in terms of genome acces

94 We use these empirical relationships to parameterize classical compartment models for infectious

95 ce oscillations, which obviates the need for parameterizing complex dynamical models.

96 We employ a parameterized computational model to reveal that bridges

97 Then, using a parameterized computational model, we show how an animal

98 Here we report a parameterized convection model to compute the Rayleigh n

99 itude faster than estimates based on smooth, parameterized cooling models.

100 rimordial clay-rich layer with the help of a parameterized crustal evolution model; we find that the

101 to five-fold higher than the values used to parameterize current TBMs.

102 motherapy, resulting in a set of 6 minimally parameterized differential equations.

103 The underlying coarse-grained (CG) model is parameterized directly from experimental data and examin

104 Neuroeconomics parameterizes distinct features of Valuation, going beyo

105 We parameterize dose-dependent changes in spectral signatur

106 ry rates from empirical data that is used to parameterize duplication and divergence models of protei

107 Multivariate regression was used to parameterize each biomechanical response as an analytica

108 To parameterize each model, we use all instances of each mo

109 ess of different payment schemes using field parameterized, ecological economic models of extensive g

110 We parameterized ED2 with species-specific tree physiologic

111 ncer was not associated with urinary cadmium parameterized either in quartiles (comparing highest qua

112 error models and base quality value profiles parameterized empirically in large sequencing datasets.

113 shedding in birds that may be used to better parameterize epidemiological models and understand trans

114 nsensus behavior and can be evaluated over a parameterized family of hypothesized sensing strategies

115 cognitive similarity, we find that within a parameterized family of social networks, network structu

116 carbon exchange and microclimate (MLCan) was parameterized for a modern US Midwest soybean cultivar.

117 en in Java, and is hence portable and can be parameterized for any organism.

118 A simple predator-prey model parameterized for copepods consuming protists generates

119 The model was parameterized for footrot in sheep.

120 The model was parameterized for this scenario for Mycosphaerella grami

121 E2F proteins and two Cdk inhibitors, and is parameterized, for the first time, to generate not only

122 ell, exotic species have lower observed than parameterized frequencies, suggesting that they are not

123 ding, basepair stacking, and solvation terms parameterized from a comprehensive series of molecular d

124 ct estimated using an ABM may be biased when parameterized from at least 1 source external to the tar

125 for DNA atomistic simulation, which has been parameterized from high-level quantum mechanical data an

126 These model components were parameterized from malaria therapy data and other studie

127 om experimental structures, and interactions parameterized from nearly 200 mus of residue-based coars

128 The restraints have been parameterized from oxygen (PiO(2)) and nickel-ethylenedi

129 is mass) of a roe deer population, which are parameterized from statistical functions that either inc

130 female-based integral projection model (IPM) parameterized from unique long-term demographic data for

131 rowth of these OS at 85% RH were also fit to parameterized functional forms.

132 The properly parameterized G-ANM will enable more accurate and realis

133 ases that cannot be described effectively by parameterized Hamiltonian models, yet their phase diagra

134 We present a method to parameterize heterogeneous elastic network models (heter

135 otential energy function, which led us to re-parameterize hydrogen bond and electrostatic potential e

136 efinement of how the hemody-namic process is parameterized (i.e., by making V0 a free parameter); how

137 article properties are poorly understood and parameterized in climate models.

138 Methods for selecting models for parameterizing IPMs are briefly discussed.

139 solution rates in serodiscordant couples and parameterize it with estimates from population-based dat

140 netic interplay of RNA synthesis and CTS and parameterized it with diverse next generation sequencing

141 MGMs consist of a parameterized joint probability density, which implies a

142 present in cloud-resolving simulations with parameterized large-scale circulation.

143 We must exercise caution in parameterizing litter decomposition and aboveground prod

144 ers was evaluated by six different optimally parameterized machine learning algorithms: Support Vecto

145 Computations with an experimentally parameterized mathematical model show that modest change

146 We coupled field-parameterized mathematical models of competition between

147 orters such as DII-VENUS in conjunction with parameterized mathematical models to provide high-resolu

148 evolution, ecologists are increasingly using parameterized mathematical models.

149 Parameterizing mathematical models has been widely perce

150 re often challenged due to the use of highly-parameterized mathematically complex structures to captu

151 niques have been proposed for fitting highly parameterized mechanistic models to complex time series,

152 We present a unified, parameterized model for the temperature dependence of la

153 elation to fit parameters to this model; the parameterized model predicted larvae's responses to nove

154 Our parameterized model readily explains occasional interven

155 The best parameterized model was able to outperform the full FIR

156 ul tools for generating quantitative data to parameterize models of combinatorial cis-regulation.

157 review existing data sources that could help parameterize models that account for intraspecific varia

158 challenges in epidemiological modeling is to parameterize models with realistic estimates for transmi

159 I then used the parameterized models in a multi-species stochastic simul

160 accurate reconstructions under realistically parameterized models of bacterial evolution, and achieve

161 een constructed experimentally and for which parameterized models of transcriptional regulation have

162 ethod such as a GA, leads to more accurately parameterized models that can simulate rich cardiac dyna

163 ty correlated with the predictions of highly parameterized models, like the many reward prediction er

164 therapies and survival were performed using parameterized multivariable accelerated failure time mod

165 More specifically, using an empirically parameterized network model of a well-studied lake ecosy

166 A novel parameterized objective function was designed for modeli

167 econstruction probabilistic clustering, both parameterized on given error rates in homopolymeric and

168 Four plant functional types were parameterized on the basis of meta-analysis of plant hyd

169 otential for bias when using WUE measures to parameterize or validate models, and indicates key resea

170 Methods that do model ILS are either highly parameterized or consider a restricted set of histories,

171 We first parameterize our model and show that it accounts for mom

172 onte-Carlo Markov Chain (MCMC) techniques to parameterize our model using monthly time series data on

173 We then develop a method to parameterize our model with real-world networks and appl

174 We parameterized our model to represent potentially light a

175 We parameterized our previously described mathematical mode

176 of attenuation maps using unimodal gaussians parameterized over a patient population.

177 Using our newly parameterized PARMBSC1 force field, we describe the conf

178 Further analysis parameterizes performance based on the number of annotat

179 oceanic simulation models, which necessarily parameterize physical features such as clouds, sea ice c

180 We used field-parameterized population models to develop a null expect

181 ow, even with limited data and without fully-parameterized population models, new insights can be gai

182 xperimentalists could develop calibrated and parameterized predictive models that inform and formaliz

183 I modify Ricker stock-recruitment models to parameterize processes important to community dynamics i

184 We have developed a specifically parameterized QM/MM method (AM1-SRP/CHARMM22) to model t

185 tegy termed cell-nuclear (CN) correlation to parameterize represented dynamic subcellular activities

186 ting a linear odds ratio model that directly parameterizes RERI.

187 rom mechanistic processes of single roots to parameterized root processes operating at the landscape

188 A parameterized rotor-speed schedule is optimized with the

189 bly, however, we find that using a carefully parameterized, sequence-based potential to capture speci

190 Here, using a fully parameterized simulation model in combination with a sim

191 Using these findings to parameterize simulations, projecting best-/worst-case sc

192 l stimuli that are not captured by an easily parameterized stimulus set.

193 systems in general and provides a method to parameterize such models from market data rather than fr

194 afficking in the tumor microenvironment, but parameterizing such models is difficult due to differing

195 most effective when the system model is well-parameterized, suggesting potential applications in synt

196 cedure to partition the parameter space of a parameterized system of ordinary differential equations

197 We also show that this method generalizes to parameterized systems and systems that are time-varying

198 cific, brain-wide functional measurements-to parameterize the causal relationships among regions of a

199 een the laboratory microcosm studies used to parameterize the CLM4 litter decomposition and the LIDET

200 icular time sequence v(t) for tin1,...,T and parameterize the complexity of such a genetic function b

201 An initial aim was to parameterize the CR model using high-dose rabbit data an

202 ror probabilities, also common to all lines, parameterize the distribution of reads conditional on li

203 We parameterize the energy functions by fitting the osmotic

204 metry, and, with experience, they learned to parameterize the force magnitude.

205 We parameterize the HES model, using social and ecological

206 odel that should be considered to accurately parameterize the joint distribution of the angles?

207 To facilitate practical implementations, we parameterize the kernel function in the Laplace domain b

208 stochastic Langevin model, which is used to parameterize the mixing.

209 subject to a variety of protocols is used to parameterize the model and ensure that it is challenged

210 We parameterize the model for Galapagos tortoises, which we

211 on differed greatly from the library used to parameterize the model.

212 to the limited data available to inform and parameterize the model.

213 l of nine independent data sets were used to parameterize the model.

214 o roads, terrain shape and fence presence to parameterize the models.

215 on marginal structural models that directly parameterize the natural direct and indirect effects of

216 A formalism was developed to consistently parameterize the potential and describe essential charac

217 t the level of load balancing authorities to parameterize the relationship between average or peak el

218 ly charged nanoparticles of the same size to parameterize the role of surface charge in determining n

219 ts to decipher the underlying mechanisms and parameterize the search process.

220 pipeline performs a growth curve analysis to parameterize the unique features occurring within microt

221 We parameterized the Agro-IBIS dynamic global vegetation mo

222 wn investigations, but some have incorrectly parameterized the extrinsic incubation period (EIP) of t

223 We parameterized the function relating WHR to BMI for white

224 al and environmental transmission routes and parameterized the model for two different climatic seaso

225 We then re-parameterized the model using a genetic algorithm, which

226 We parameterized the model with a comprehensive set of HER

227 We parameterized the required population code in PC activit

228 Phi (a fraction between 1 and 0) parameterizes the extent to which a mutation changes the

229 experimental work aimed at understanding and parameterizing the effects of climate change and variabi

230 es, granulomas, and open cavities as well as parameterizing the effects of drugs on the pathogen dyna

231 By parameterizing the model with available experimental dat

232 By parameterizing the models using the frequency of the 18

233 programmes and will be of key importance for parameterizing the next generation of dynamic vegetation

234 Because this correlation does not hold, parameterizing the PBE predictions of DeltaG(el) against

235 onments in the model, or, even better, by re-parameterizing the spectra-only model to implicitly capt

236 specific combinations of these processes and parameterize them in a way that makes it difficult to el

237 of quantitative genetic approaches that can parameterize these models to provide more meaningful pre

238 ments of CCN activation from playa dusts and parameterize these results in terms of both kappa-Kohler

239 er of easily obtainable data are required to parameterize this mechanistic model for any endotherm, a

240 tionships by humans underscores the need for parameterizing thresholds of human- vs. climate-driven f

241 rements and subcellular compartmentation was parameterized to fit the sucrose, hexose, and glucose-6-

242 model is independently implemented and then parameterized to identify optimal trade-offs in performa

243 ransmission within an individual-based model parameterized to match Australian conditions, explicitly

244 We show that, if our model is carefully parameterized to match epidemic behavior, then using agg

245 del of the spread of foot-and-mouth disease, parameterized to match the 2001 UK outbreak, to address

246 The groove charges are parameterized to reproduce the nonuniform histone/DNA in

247 Several model variants are parameterized to test the importance of sequence-specifi

248 A dynamic HCV transmission model was parameterized to three chronic HCV prevalence settings:

249 the design of future social contact surveys, parameterize transmission models of respiratory infectio

250 se Approximate Bayesian Computation (ABC) to parameterize two within-herd transmission models within

251 dition, C3 and C4 photosynthesis models were parameterized using a novel hierarchical Bayesian approa

252 h of these models is that they can be easily parameterized using basic information about the physical

253 s: it is independent of dimension, it can be parameterized using classical elastic properties (Poisso

254 -effectiveness of eight vaccination policies parameterized using country-level data from Thailand.

255 a simple model of egg-laying date evolution, parameterized using data from a population of Great tits

256 this paper we developed a mathematical model parameterized using data from the biochemistry and ecolo

257 we use a stochastic spatially explicit model parameterized using data on the spread of P. ramorum to

258 The model is parameterized using experimental data.

259 The models are parameterized using field observations on the various fo

260 y-state equation for the six-state system is parameterized using five independent data sets and valid

261 plicit land change/carbon bookkeeping model, parameterized using high-resolution satellite time serie

262 Models parameterized using only expression data predicted expre

263 We created a simulation model parameterized using person-level longitudinal data to as

264 ltage time course of the coupled neurons are parameterized using piecewise linear functional forms, a

265 levels is poor, a mass action kinetics model parameterized using protein synthesis and degradation ra

266 The model was parameterized using quantitative phosphoprotein expressi

267 We developed a mathematical function, parameterized using this synthetic gene data set, which

268 neous models were created by introduction of parameterized variations in tissue excitability.

269 Comparisons of a parameterized version of the model with molecular studie

270 Transition rates are parameterized via analyses of single-motor stepping beha

271 It is therefore also a poor basis for parameterizing water stress response in land-surface mod

272 All responses were parameterized well by polynomials (R(2) values between 0

273 Using two-sex models parameterized with data from free-living mammal populati

274 Our model, parameterized with data from insects at different latitu

275 that existing biogeochemical cycling models parameterized with data from species grown in monocultur

276 en up to 2030 using a HCV transmission model parameterized with data from the Swiss HIV Cohort Study.

277 eveloped a compartmental model of TB in NYC, parameterized with detailed epidemiological data.

278 We propose a treatment response model, fully parameterized with experimental imaging data, to describ

279 model constructed from first principles and parameterized with experimental measurements of the comp

280 eHg concentrations, using a biokinetic model parameterized with experimental rates.

281 The model was parameterized with experimental results in the literatur

282 l, and competition using the landscape model parameterized with forest inventory data.

283 The theory, parameterized with global averaged leaf traits and micro

284 ous medium finite element gas-exchange model parameterized with light absorption profiles, we found t

285 The model, parameterized with measured traits from chaparral specie

286 The model was parameterized with meta-analyses of previously published

287 In contrast, models parameterized with occupancy and expression data predict

288 This model, which was parameterized with on-treatment data from early phase cl

289 We hence built a model parameterized with our data to examine whether polymorph

290 A one-dimensional (1D) model, parameterized with our experimentally derived exponentia

291 e ratio of the virus, R0, and the models are parameterized with preliminary data.

292 mission within an MSM population in England, parameterized with sexual behaviour, GUM attendance, HPV

293 The model is parameterized with southern Brazilian data on mosaic eco

294 When the model was parameterized with spatial fibrillar dimensions that clo

295 The resulting model can then be parameterized with standardized data, such as the datase

296 The model is parameterized with survey data on actual perceptions reg

297 Substrates were parameterized with the CHARMM General Force Field.

298 Using a static model parameterized with these data, we estimated the effectiv

299 Using a population dynamics model parameterized with these experimental data, we predicted

300 We present a mathematical model parameterized with unique data from an extensive study o