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1 e (GlcNAc-MurNAc(pentapeptide)-GlcNAc-MurNAc(pentapeptide)).
2 pentapeptide and 1,6-anhydro-N-acetylmuramyl pentapeptide).
3 tion and biogenesis of a cyclical AgrD-type, pentapeptide.
4 bly serve as a flexible tether for the NWETF pentapeptide.
5 y about half of the deuteriums of the parent pentapeptide.
6 inct from, its natural substrate, UDP-MurNAc-pentapeptide.
7 constant (Kd) of 11 microM observed with the pentapeptide.
8 hosphate moiety of C35-P on bound UDP-MurNAc-pentapeptide.
9 eptide bond on the amino-terminal end of the pentapeptide.
10 onformational change when binding UDP-MurNAc-pentapeptide.
11 precursor UDP-N-acetylmuramic acid (MurNAc)-pentapeptide.
12 , its DNA operator, and repressor UDP-MurNAc-pentapeptide.
13 boxypeptidase, which hydrolyzes both di- and pentapeptide.
14 NRPSs is L-pHPG-L-Arg-D-pHPG-L-Ser-L-pHPG, a pentapeptide.
15 pproximately P, and is inhibited by the PhrC pentapeptide.
16 , in contrast to the other characterized Phr pentapeptides.
17 and AmiB either have no preference or prefer pentapeptides.
18 l wall proteins with tandemly repeated PPVYK pentapeptides.
19 nd tripeptides, and Fmoc-modified tetra- and pentapeptides.
20 vs. 71% of glutathione and up to 93% for the pentapeptides.
21 predict reliably the sensing ability of the pentapeptides.
25 psipeptide 26 (residues 1, 2 and 15-17), and pentapeptide 34 (residues 10-14) were prepared, sequenti
27 involve the synthesis of UDP-n-acetylmuramyl pentapeptide, a key precursor molecule required for the
28 ically reacted with the lysine of UDP-MurNAc-pentapeptide, a peptidoglycan precursor used by the amin
29 phanamide (NATA), a tripeptide: AWA, and six pentapeptides: AAWAA, WVSGT, GYWHE, HEWTV, EAWQE, and DY
30 derived from the partitioning of host-guest pentapeptides (Ac-WLXLL) into the interfaces of phosphat
31 Alanine residues in two model peptides, the pentapeptide AcGGAGGNH(2) and the 11mer AcO(2)A(7)O(2)NH
32 ide side chains of muropeptide subunits, and pentapeptides act as donors for cross-linking adjacent s
38 l-valyl-N-methylvalyl-prolyl-proline (P5), a pentapeptide also present in dolastatin 15 and cemadotin
39 transition states to form native tetra- and pentapeptide analogues was studied on S-acylcysteine pep
40 cetylglucosamine-1,6-anhydro-N-acetylmuramyl pentapeptide and 1,6-anhydro-N-acetylmuramyl pentapeptid
41 ounds increased, to a maximum of 95% for the pentapeptide and 56%, 57% and 45% for the dipeptide, rib
42 /M22K) exhibits enhanced HX within the CXXCH pentapeptide and a modest increase in Em (by 30 mV).
43 spectral signatures begin to converge at the pentapeptide and become almost the same for the octa- an
44 Km values of 42 and 15 microm for UDP-MurNAc pentapeptide and Escherichia coli Ala-tRNAAla, respectiv
46 ence enhancement using dansylated UDP-MurNAc-pentapeptide and heptaprenyl phosphate (C35-P, short-cha
48 rsor, Lipid I, from UDP-N-acetylmuramic acid-pentapeptide and the lipid carrier, undecaprenol phospha
49 ould be inhibited by an octanoylated ghrelin pentapeptide, and its potency was enhanced 45-fold when
50 the GLP-1 receptor might be mediated by the pentapeptide, and the previously reported nonapeptide (F
51 APS approach is first applied to the alanine-pentapeptide, and the results are tested against an expl
52 assembly line reconstitution of pacidamycin pentapeptide antibiotic scaffolds, bridging the primary
53 Pacidamycins are a family of uridyl tetra/pentapeptide antibiotics that act on the translocase Mra
54 Pacidamycins are a family of uridyl tetra/pentapeptide antibiotics with antipseudomonal activities
56 mixture in which the muramyl residue and the pentapeptide are modified singly and in combination.
61 flippases thought to shield the disaccharide-pentapeptide as it crosses the hydrophobic core of the m
62 the activation of PlcR by binding of a PapR pentapeptide as normally occurs in Bacillus thuringiensi
63 taxis by Escherichia coli require a specific pentapeptide at the chemoreceptor carboxyl terminus.
64 additional amino acids extending beyond the pentapeptide at their carboxyl termini and assayed methy
65 -borne pentapeptide implied linker (i) makes pentapeptide available to modification enzymes by separa
67 to afford peptidic derivatives for exploring pentapeptide-based hydrogels as potential biomaterials.
68 lic peptides that fold in water to present a pentapeptide beta-strand along one edge; the other edge
71 ganisms having MCPs that contain and/or lack pentapeptide-binding motifs identified key similarities
72 been inserted at positions i and i+3 of the pentapeptide Boc-(R)-Aic(NN)-(Ala)2-(R)-Aic(NN)-Ala-OMe
73 eight substrates, based on variation of the pentapeptide Boc-l-Ala-gamma-d-Glu-l-Lys-d-Ala-d-Ala, we
76 oteinogenic amino acids, proteolysis of this pentapeptide by trypsin yields two fragments from cleava
77 impact of properties of the Cys-X-X-Cys-His pentapeptide c-heme attachment (CXXCH) motif on heme red
79 binds the terminal d-alanine residue of the pentapeptide chain of bacterial peptidoglycan, resulting
81 nformation to the RGD sequence of the cyclic pentapeptide cilengitide when bound to integrin alpha(V)
84 e-containing muramyl tetra- (compound 5) and pentapeptide (compound 6) showed that these compounds ha
86 ompounds that contained only a stem peptide (pentapeptide, compound 1) and (DAP-PP, compound 2) as we
88 ic anti-dsDNA antibodies also recognizes the pentapeptide consensus sequence D/E W D/E Y S/G (DWEYS)
89 glycine generating enzyme (FGE) recognizes a pentapeptide consensus sequence, CxPxR, and it specifica
90 GOAT also transferred [(3)H]octanoyl to a pentapeptide containing only the N-terminal five amino a
91 and applied in the preparation of cyclic aza-pentapeptides containing the RGD (Arg-Gly-Asp) sequence.
94 The largest response was obtained for the pentapeptides Cys-Ile-His-Asn-Pro and Cys-Ile-Gln-Pro-Va
95 ed a high-fat diet was accomplished with the pentapeptide cysteine-arginine-glutamic acid-lysine-alan
96 ce of two distinct classes of CheR proteins: pentapeptide-dependent and pentapeptide-independent meth
99 eratures, and that interaction with an MEEVD pentapeptide derived from Hsp90 stabilises a folded stru
100 vercrowding via the release of a fratricidal pentapeptide derived from the metabolic enzyme glucose-6
101 R, a transcription regulator that requires a pentapeptide derived from the papR gene product for bind
102 lic beta-sheet components 1a and 1b comprise pentapeptides derived from the N- and C-terminal regions
104 produce a fusion containing a zwitterionic, pentapeptide designed from Bax inhibiting peptide (Ku70)
107 resulting naphthylalanine-substituted cyclic pentapeptides displayed variable mixed-efficacy profiles
108 t the concomitant binding of both UDP-MurNAc-pentapeptide-DNS and C35-P to the enzyme is required bef
110 We have also employed a synthetic sulfated pentapeptide (DY(SO(3)(-))DY(SO(3)(-))Q, designated D5Q1
115 for the approximately d-Ala-d-Ala moiety of pentapeptides engaged in cross-links in the bacterial ce
116 nstrated that an impermeable fluoresceinated pentapeptide enters the cytoplasm and nucleus of COS 7 c
117 DGAT1 and DGAT2 contain a similar C-terminal pentapeptide ER retrieval motif, this motif alone is not
118 t of substrates: vitamin K hydroquinone, the pentapeptide FLEEL, and NaHCO(3), on the stability of th
119 f the Phr precursor proteins into the active pentapeptide form is a key event in the initiation of sp
120 ed on the His276-Pro277-Glu278-Val279-Tyr280 pentapeptide formed by the His-Tyr covalent linkage.
121 roposed to competitively displace UDP-MurNAc-pentapeptide from AmpR and convert it into an activator
126 ne (P), fluorene (F), or naphthalene (N)) to pentapeptides GAGAS (1), GVPVP (2), VPGVG (3), VTEEI (4)
127 pound 40 was 97% orally bioavailable, larger pentapeptides generally had low oral bioavailability.
133 tative catalytic triad (SDH) and a conserved pentapeptide (GXSXG) surrounding the nucleophilic serine
134 y stereochemistry, since five epimers of the pentapeptide, H2N-Gly-Leu-Ser-Phe-Ala-OH (GLSFA) all dis
136 e that employs native chemical ligation of a pentapeptide (HCDLP) to recombinant S. coelicolor NiSOD
139 runcations on CheR binding to receptor-borne pentapeptide implied linker (i) makes pentapeptide avail
140 nn rearrangement was exacted on a late-stage pentapeptide in order to transform an asparagine residue
141 on of the third position residue in the stem pentapeptide in S. aureus MurE, the structure shows that
143 DD-carboxypeptidase mutant that accumulates pentapeptides in its peptidoglycan, allowing us to visua
145 namics (MD) simulations of Gly-Gly-X-Gly-Gly pentapeptides in water at 298 K with exhaustive sampling
147 ively recent event in evolution and that the pentapeptide-independent methylation system is more comm
153 Ab) against LR (LR-Ab) or YIGSR, a synthetic pentapeptide inhibitor for LR, significantly attenuated
155 ifs of RapC mediate its interaction with the pentapeptide inhibitor PhrC (ERGMT) or with its target p
160 ips of this enzyme, we performed large scale pentapeptide insertional mutagenesis to generate inserti
161 -Glc PPase enzyme, we studied the effects of pentapeptide insertions at different positions in the en
162 he two classes of mutant HrpA proteins carry pentapeptide insertions in discrete regions, which are i
163 unctional HrpA derivatives that carry random pentapeptide insertions or single amino acid mutations,
170 trol of the third position amino acid in the pentapeptide is crucial to maintain the fidelity of late
171 efensins, the third position of the lipid II pentapeptide is essential for effective copsin binding.
175 on of mature cell wall precursor, UDP-MurNAc-pentapeptide, is inhibited by region 3.2 of sigma subuni
178 an from the dacA-1 mutant contained elevated pentapeptide levels in standard and low salt media, and
180 Based on protein folding considerations, a pentapeptide ligand, CALNN, which converts citrate-stabi
181 peptide (Park's nucleotide) to prenyl-MurNAc-pentapeptide (lipid I), the first membrane-anchored pept
182 observation suggests that 1,6-anhydroMurNAc-pentapeptide may convert AmpR into an activator of ampC
183 the extreme carboxyl terminus important for pentapeptide-mediated enhancement of adaptational modifi
184 l three carboxyl-terminal extensions reduced pentapeptide-mediated enhancement of rates of adaptation
185 ale liposomal formulation (NLF) contains the pentapeptide mimic 1,4-Bis (9-O dihydroquinidinyl) phtha
186 nce on Asp isomerization was evaluated using pentapeptide models of the MAbs, which included the labi
188 sp2 homologues identified a highly conserved pentapeptide motif (Gly-X-Ser(362)-X-Gly) typical of mos
190 hereby producing cells with higher levels of pentapeptides, mutants carrying only AmiC produced a hig
192 ecaprenyl pyrophosphate-N-acetylmuramic acid(pentapeptide)-N-acetylglucosamine (lipid II), which is r
193 re as determined by NMR of the 2-kDa NAG-NAM(pentapeptide)-NAG-NAM(pentapeptide) synthetic fragment o
194 lycan substrate fragment containing the full pentapeptide, NAM-(L-Ala-D-isoGlu-L-Lys-D-Ala-D-Ala).
195 but not, or only marginally, the UDP-MurNAc pentapeptide nucleotide precursor as acceptor substrates
196 gate the competence and sporulation factor-a pentapeptide of amino acid sequence ERGMT-within intact
197 add the cross-bridge amino acids to the stem pentapeptide of cell wall precursors, and vanK is essent
198 otensin(8-13), an analogue of the C-terminal pentapeptide of neuropeptide Y, and a neuropeptide FF an
201 ct ions for a series of histidine-containing pentapeptides of both non-tryptic (AAHAL, AHAAL, AHADL,
202 of the tetrapeptide intermediate yielding a pentapeptide on the thio-templated nonribosomal peptide
203 ow only three deuteriums are attached on the pentapeptide, one on each of the amide nitrogens of Y, I
204 catalyzes the transformation from UDP-MurNAc-pentapeptide (Park's nucleotide) to prenyl-MurNAc-pentap
206 n of lipid II, the undecaprenyl-disaccharide pentapeptide peptidoglycan precursor, remains mysterious
207 F (Spo0F approximately P), and its inhibitor pentapeptide, PhrA, was analyzed in part by generating c
208 edicted to encode five modules pointing to a pentapeptide precursor in nocardicin A biosynthesis, unl
210 ng the AmpR.DNA tetramer bound to UDP-MurNAc-pentapeptide predicts that the UDP-MurNAc moiety of the
211 e nonnaturally occurring D form of the DWEYS pentapeptide prevents these antibodies from depositing i
213 Their activity is inhibited by specific Phr pentapeptides produced from the product of phr genes thr
214 stal structure of Cbl(TKB) in complex with a pentapeptide, pYTPEP, revealed that the PEP region adopt
218 NA foci and translation of repeat-associated pentapeptide repeat (PPR) proteins, consistent with obse
219 ss of synthetic repeat proteins based on the pentapeptide repeat family of beta-solenoid proteins.
220 The expression of MfpA, a member of the pentapeptide repeat family of proteins from Mycobacteriu
224 uberculosis MfpA is a founding member of the pentapeptide repeat protein (PRP) family that confers re
228 At2g44920 from Arabidopsis thaliana is a pentapeptide-repeat protein (PRP) composed of 25 repeats
229 s two domains, a beta-helix domain formed by pentapeptide repeats and a bilobed catalytic domain remi
232 effector-binding domain bound to UDP-MurNAc-pentapeptide revealed that the terminal D-Ala-D-Ala moti
233 boxyl terminal domain of p21 conjugated to a pentapeptide (RYIRS) rapidly enters lymphoid cells and a
234 c) consists of a heme covalently linked to a pentapeptide segment (Cys-X-X-Cys-His), which provides a
235 e investigated the effects of relamorelin (a pentapeptide-selective agonist of the ghrelin receptor t
236 action between the CheR beta-subdomain and a pentapeptide sequence (NWETF or NWESF) at the C-terminus
237 both substrate sites and a carboxyl-terminal pentapeptide sequence carried by certain receptors.
238 ndance receptors carry the carboxyl-terminal pentapeptide sequence NWETF that enhances adaptational c
239 by either enzyme is dependent on a conserved pentapeptide sequence, NWETF or NWESF, present at the ex
240 investigated the relative importance of each pentapeptide side chain for the two enhancing interactio
241 PBP 5 removes the terminal D-alanine from pentapeptide side chains of muropeptide subunits, and pe
242 ts are recognized by SrtC proteins through a pentapeptide sorting signal, and while previous studies
243 We investigated the molecular basis for pentapeptide specificity using peptide analog inhibitors
244 es: the well-known peptidoglycan D-Ala-D-Ala pentapeptide stem terminus and the pentaglycyl bridging
247 anied by a dramatic accumulation of unlinked pentapeptide stems with no change in the tetrapeptide po
249 a-turn conformation that develops within the pentapeptide structural repeats above the phase transiti
250 alization of PBP2 was also observed when its pentapeptide substrate was eliminated by addition of d-c
252 ncoded library (130,321 compounds) of lysine pentapeptide substrates of TGase, synthesized using the
254 hemical assays, caspase-2 uniquely prefers a pentapeptide (such as VDVAD) rather than a tetrapeptide,
256 he(7)/D-Nal(2')(7)-Arg(8)-Trp(9)-Lys(10)-NH2 pentapeptide template lead to nanomolar range and select
257 ibe truncation and SAR studies to identify a pentapeptide that binds Cbl tyrosine kinase binding doma
262 are different but share a carboxyl-terminal pentapeptide that enhances adaptational covalent modific
263 The PG building block is a disaccharide-pentapeptide that is synthesized as a lipid-linked precu
264 undecaprenyl diphosphate and a disaccharide-pentapeptide that PG-synthesizing enzymes use to build t
266 tracellular death factor is a quorum-sensing pentapeptide that relays cell density information to an
267 the nonapeptide bradykinin and of two globin pentapeptides that are potential in vivo substrates.
268 cer of AmpC, the quantities of both the stem pentapeptide (the substrate for the dd-carboxypeptidase
270 s have been developed to synthesize tri- and pentapeptide thioesters containing one or more p-(hydrox
271 f excess Q7, APN quantitatively converts the pentapeptides Thr-Gly-Ala-X-Met into the dipeptides X-Me
272 f the peptidoglycan precursor phospho-MurNAc-pentapeptide to the lipid carrier undecaprenyl phosphate
274 ne bound and soluble forms of PBP5 converted pentapeptides to tetrapeptides in vitro and in vivo, and
275 , aromatic-aromatic interactions promote the pentapeptides transform from alpha-helix to beta-sheet c
277 ecific inhibitor of MraY, the phospho-MurNAc-pentapeptide translocase that catalyzes the synthesis of
280 e nanomolar inhibitors of Mtb phospho-MurNAc-pentapeptide translocase, the enzyme responsible for the
281 nd VanY acting on dipeptide (D-Ala-D-Ala) or pentapeptide (UDP-MurNac-L-Ala-D-Glu-L-Lys-D-Ala-D-Ala),
282 idoglycan precursor UDP-N-acetylmuramic acid-pentapeptide (UDP-MurNAc-pentapeptide) in the cytoplasm.
284 e macrocyclic beta-sheet peptides comprise a pentapeptide "upper" strand, two delta-linked ornithine
286 pH-dependent partitioning of the host-guest pentapeptide variants AcWL-X-LL-NH(2) and WL-X-LL-NH(2)
287 of suitably functionalized tri-, tetra- and pentapeptides via Suzuki-Miyaura cross-coupling has been
289 or epoxidation activity when the small FLEEL pentapeptide was used as a substrate, suggesting that N-
290 ons of DYDYQ, whereas high concentrations of pentapeptide were required to inhibit cleavage of rP2-II
291 dium produced an abnormal peptidoglycan: all pentapeptides were replaced by tetrapeptides, and the pe
292 ycine-arginine-glycine-aspartic acid-serine)-pentapeptide (which interrupts binding of RGD-containing
293 ved when Y* was generated by photolysis in a pentapeptide, which matched the primary sequence surroun
294 tle activity against muropeptides containing pentapeptides, which typically characterize newly synthe
296 owed that the enhanced binding observed with pentapeptides with carboxyl-terminal tyrosine, compared
297 e length of their peptides (tri-, tetra-, or pentapeptides with or without mono- or dipeptide branch)
298 MOR and DOR, we have synthesized a series of pentapeptides with the goal of developing a MOR agonist/
299 -Ala-Trp-Ala-Ala-amide (AAWAA), and the five pentapeptides with the same sequence as the Trp substitu
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