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1 n a cis- or trans-configured Glu(18)-Pro(19) peptide bond.
2 e surrounding extein fragments with a native peptide bond.
3 rans isomerization of one particular proline peptide bond.
4 some takes place following formation of each peptide bond.
5 lanking polypeptides (exteins) with a native peptide bond.
6 age of glycosidic bonds without breaking the peptide bond.
7 pecifically stimulate formation of the first peptide bond.
8 modified to join the N and C termini with a peptide bond.
9 face, induced by distortions of the backbone peptide bond.
10 ahel peptides, indicating exclusion from the peptide bond.
11 em-diol intermediate and (2) cleavage of the peptide bond.
12 nsion and its characteristic cis-Ile54-Pro55 peptide bond.
13 orbital (pi*) of C(i)=O(i) of the subsequent peptide bond.
14 udy a reaction similar to the formation of a peptide bond.
15 calcium ions triggers the formation of a cis peptide bond.
16 th N-methylacetamide chosen to represent the peptide bond.
17 sed strain on the already weak His207-Arg208 peptide bond.
18 disrupted by a flip of the Glu(192)-Gly(193) peptide bond.
19 ing is coordinated by an unusual cis-Ala-Ala peptide bond.
20 ed 180 degrees rotation of the Met109-Gly110 peptide bond.
21 ed in the active site for resynthesis of the peptide bond.
22 carbonyl group (C(i)=O(i)) of the subsequent peptide bond.
23 es in which an oxirane replaces the scissile peptide bond.
24 of occurrence in fragmentation of the second peptide bond.
25 r a second gas phase mechanism at the second peptide bond.
26 located directly N-terminal to the scissile peptide bond.
27 should readily block the formation of every peptide bond.
28 APN degradation due to a distorted scissile peptide bond.
29 ein-succinimide product and scission of that peptide bond.
30 gamma-glutamyl amide linkages and/or unusual peptide bonds.
31 s isomerization of the N13-P14 and P100-P101 peptide bonds.
32 iles and hydroxybenzotriazole, gives rise to peptide bonds.
33 sequence motif that can stabilize Pro-cisPro peptide bonds.
34 o peptide bonds of tripeptides into selenoxo peptide bonds.
35 for the stabilization of two high-energy cis peptide bonds.
36 city to hydrolyze thioester, isopeptide, and peptide bonds.
37 relation between the cis/trans states of the peptide bonds.
38 forms allows for the selective formation of peptide bonds.
39 g the conformation of specific pSer/pThr-Pro peptide bonds.
40 erminal tail, and trans conformation for the peptide bonds.
41 fering from sequence-defined polymers having peptide bonds.
42 the cis-trans isomerization of Xaa(1)-Pro(2) peptide bonds.
43 y of the liposomes promotes the formation of peptide bonds.
44 the cis-trans isomerization of Xaa(1)-Pro(2) peptide bonds.
45 At the P-site, proline is slow in forming peptide bonds.
46 of conformational motion at or near specific peptide bonds.
47 t ovalbumin aggregation rendered a number of peptide bonds accessible to digestive proteases which we
48 l change of the isomeric state of the prolyl peptide bond acts as a switching mechanism in altering t
49 e oxidized state, an unusual non-proline cis-peptide bond adjacent to one of the cysteines introduces
50 thermally stable mutants, the L94(L)-S95(L) peptide bond adopts an energetically unfavorable non-X-p
52 4 with residues that strongly prefer a trans peptide bond (Ala, Gly) results in significant populatio
54 ring hydrogen-deuterium exchange patterns of peptide bond amide protons monitored by mass spectrometr
55 1,2,3]triazolyl moiety is isosteric with the peptide bond and can function as a surrogate of the clas
56 hich the disulfide A11-B10 was replaced by a peptide bond and found that cAMP production ceased while
57 PXTG-containing proteins at the scissile T-G peptide bond and ligates protein-LPXT to the terminal Gl
58 ols the orientation of the Glu(192)-Gly(193) peptide bond and the correct architecture of the oxyanio
59 age occurs most efficiently at the LN1036-37 peptide bond and to a lesser extent at three other sites
60 arboxylate metal ligand, a resulting twisted peptide bond, and the off-line geometry for dioxygen coo
61 mutations, cleaves human IL-23 at the target peptide bond, and when pre-mixed with IL-23 in primary c
62 sight into the formation of modern ribosomal peptide bonds, and a means for the emergence of peptides
63 iazole is a well-recognized bio-isostere for peptide bonds, and peptides with one or more triazole un
64 the hydrogen-bonding network around the cis-peptide bond are well conserved within the metallopeptid
65 the site of this cleavage, determining which peptide bonds are cleaved, (ii) the mechanism by which g
66 yze the isomerization of the phospho-Thr-Pro peptide bond at the turn motif, thus converting these PK
69 in LSF permits isomerization by Pin1 of the peptide bonds at the nearby phosphorylated SP motifs (Se
70 mechanism by which the cleavage of multiple peptide bonds awaits the "almost complete" delivery of a
72 talyses the formation of an irreversible iso-peptide bond between lysine 50 and glutamic acid 270 on
73 ss spectrometry showed that IpaJ cleaved the peptide bond between N-myristoylated glycine-2 and aspar
74 lyzes the formation of an intermolecular iso-peptide bond between residues E270 and K50 located in th
75 nd other enzymes that selectively cleave the peptide bond between the proline and the phenylalanine a
78 ative method was developed to form amide and peptide bonds between amines and primary nitroalkanes si
79 hat catalyzes the cis/trans isomerization of peptide bonds between proline and phosphorylated serine/
80 2,3-triazole moiety can be incorporated as a peptide bond bioisostere to provide protease resistance
82 teolytic events: cleavage of the Leu81-Glu82 peptide bond by chymotrypsin C (CTRC) and cleavage of th
84 st peptides by proteolytic cleavage at Arg-X peptide bonds by arginine gingipains, followed by citrul
85 However, despite the hydrolysis of protein peptide bonds by peptidases being a process essential to
86 trifluoromethyl group, we show that the cis peptide bond can be readily switched from 0% to 100% in
87 ied: amino acid side chains can be modified, peptide bonds can be cleaved or isomerized, and disulfid
88 c VWF and FRETS-VWF73 at the V(1607)-T(1608) peptide bond; cathepsin G and matrix metalloprotease 9 c
89 t efficiently catalyzed citrulline-dependent peptide bond cleavage (kcat/KM = 6.9 x 10(5) M(-1)s(-1))
90 D) of the zn* fragments resulted in specific peptide bond cleavage adjacent to the binding site of 1,
91 d that provide insight into the chemistry of peptide bond cleavage and establish the role of Thr1 Oga
92 triads of fragmentation ions resulting from peptide bond cleavage and further neutral loss of either
93 rization of the ATP- versus AMPPNP-dependent peptide bond cleavage and the delivery of the scissile s
97 h residue 1 being predominantly l-isoAsp and peptide bond cleavage next to Ser 8 is also evident.
99 ked to differences in enzyme selectivity for peptide bond cleavage of camel and bovine milk proteins
101 l residues of oxidized trunc-TtRp have trans peptide bond configurations but that two of these peptid
102 ctra and the same pattern of peptidyl-prolyl peptide bond configurations by NMR, and both appear to b
105 nique ability to populate both cis and trans peptide bond conformations may allow proline to act as a
107 leavage site in VWF, the Tyr(1605)-Met(1606) peptide bond, contains both oxidation-prone residues.
108 new ends through the cleavage of an existing peptide bond, CP can perturb local tertiary structure an
109 s a microbial toxin mechanism acting via iso-peptide bond cross-linking between host proteins and is,
110 de bond configurations but that two of these peptide bonds (Cys151-Pro152 and Gly169-Pro170 located n
111 e energy barrier to the formation of the cis peptide bond decreases from 21.4 kcal/mol in the absence
112 tions: peptidyl transfer, the formation of a peptide bond during protein synthesis, and peptidyl hydr
116 and the nascent peptide cooperate to inhibit peptide bond formation and induce translation arrest.
117 plex molecular machine, but the mechanism of peptide bond formation and the origin of the catalytic p
119 explain how the rates of GTP hydrolysis and peptide bond formation are controlled by the mRNA codon
121 ng during translation correlates with slowed peptide bond formation at successive proline sequence po
122 report unambiguous spectroscopic evidence of peptide bond formation at the air-water interface, yield
123 s of faithfully decoding mRNA and catalyzing peptide bond formation at the peptidyl transferase cente
124 a specific requirement for eIF5A to promote peptide bond formation between consecutive Pro residues.
125 lide action involves selective inhibition of peptide bond formation between specific combinations of
126 ghter-binding aa-tRNAs show reduced rates of peptide bond formation due to slow release from EF-Tu*GD
127 ondensation domain, which typically performs peptide bond formation during product assembly, also syn
131 that similar mechanisms are involved in the peptide bond formation in aqueous solution and in the ri
132 ructures have shown that the active site for peptide bond formation is composed entirely of RNA.
134 required for irreversible GTP hydrolysis and peptide bond formation plays a key role in the fidelity
136 y of correct aminoacyl-tRNA to the ribosome, peptide bond formation results in a rapid conformational
137 nti-IgG antibodies were then coupled through peptide bond formation to acidic functional groups on th
138 abrogate the ability of the PTC to catalyze peptide bond formation with a particular subset of amino
140 as dictated by the mRNA codon, catalysis of peptide bond formation, and movement of the tRNAs and mR
143 ingly, the key chemical step of translation, peptide bond formation, is among the slower enzymatic re
144 chemical step of natural protein synthesis, peptide bond formation, is catalysed by the large subuni
145 mical reactivity hypothesis and arguing that peptide bond formation, not accommodation, is rate limit
146 ssesses all of the capabilities required for peptide bond formation, seems to be still functioning in
165 lated tRNA is established spontaneously upon peptide bond formation; this event involves coupled move
166 gation factor P (EF-P), which by stimulating peptide-bond formation allows translation to resume.
167 showed no defects in mRNA and tRNA binding, peptide-bond formation and sparsomycin-dependent translo
169 effectors of messenger RNA (mRNA) decoding, peptide-bond formation, and ribosome dynamics during tra
170 ng fundamental insight into the mechanism of peptide-bond formation, our findings suggest how the seq
171 cid proline is a poor donor and acceptor for peptide-bond formation, such that translational stalling
172 he elimination of a water molecule for every peptide bond formed, and are thus unfavorable in aqueous
173 cts the carrier domain cofactor bound to the peptide bond-forming condensation domain, whereas a seco
174 hus represents a new group of tRNA-dependent peptide bond-forming enzymes in secondary metabolite bio
177 highly strained conformation at the scissile peptide bond, had been identified and was hypothesized t
178 f peptide fragments using a dynamic covalent peptide bond has not yet been achieved without enzymatic
179 Many high-yielding reactions for forming peptide bonds have been developed but these are complex,
184 and processivity may be achieved by coupling peptide bond hydrolysis to the binding and release of su
185 , quantifying the extent of racemization and peptide bond hydrolysis using reverse-phase high-perform
186 alternating between epoxide ring opening and peptide bond hydrolysis, assisted by E271 and E296, resp
191 glycan modifications, yet always cleaved the peptide bond immediately preceding the glycosylated resi
192 glutamate binding causes an aspartate-serine peptide bond in a flexible part of lobe 2 to rotate 180
193 bonyl oxygen on the N-terminal of the prolyl peptide bond in a predominately unidirectional fashion.
200 use Ctrc readily cleaved the Phe-150-Gly-151 peptide bond in the autolysis loop of T8 and T9 and inhi
202 active site of Ssu72, with the pSer 5-Pro 6 peptide bond in the cis configuration, which contrasts w
203 trate the lack of recognition of the central peptide bond in the dipeptide, potentially enabling the
204 iated by the cleavage of the Arg(13)-Gln(14) peptide bond in the loop region, a catastrophic proteoly
205 roteolytic cleavage of the Arg(494)-Val(495) peptide bond in the zymogen-like pro-HGF results in allo
207 prolyl isomerization of the Asp(29)-Pro(30) peptide bond in wild-type AHSP because it was absent whe
210 ng the backbone connectivity by breaking all peptide bonds in lysozyme, we find that the hysteresis s
214 fusion protein substrates position alternate peptide bonds in register with the antibody catalytic su
216 avage of two disulfide bonds and up to three peptide bonds in the kringle 5 domain of the protein.
217 conformations for both the first and second peptide bonds in the monomers, and a two-dimensional che
221 line-I helix (PPI, having all cis-configured peptide bonds) into polyproline-II (PPII, all trans) hel
223 osecond timescale but does not reproduce the peptide bond inversion between loop residues Tyr269 and
224 ith the substrate, and creation of a twisted peptide bond involving this carboxylate and the followin
225 icing pathway in which the upstream scissile peptide bond is consecutively rearranged into two thioes
226 and transfer RNA on the ribosome after each peptide bond is formed, a process termed translocation.
227 As and messenger RNA by one codon after each peptide bond is formed, a reaction that requires ribosom
229 of H3 at the alanine 15-proline 16 (A15-P16) peptide bond is influenced by lysine 14 (K14) and contro
234 s, so the cis/trans isomerization of proline peptide bonds is the rate-limiting step during triple-he
235 l Ibeta-strand and an accompanying N448-P449 peptide bond isomerization in the preceding HI loop.
239 ed cells, indicating that the NH(2)-terminal peptide bond of Asp(452) is essential for the initiation
240 Here we demonstrate that the Leu81-Glu82 peptide bond of human cationic trypsin, but not trypsino
241 hia coli hydrolyzes the terminal D-Ala-D-Ala peptide bond of the stem peptides of the cell wall pepti
242 ced binding requires the N-end residue and a peptide bond of the substrate, as well as multiple aspec
243 nesis, including backbone mutagenesis of the peptide bond of the vicinal disulfide, we have establish
244 rsed in the solution containing trypsin, the peptide bonds of BSA were hydrolyzed and peptide fragmen
247 enation is demonstrated by conversion of two peptide bonds of tripeptides into selenoxo peptide bonds
248 hat Fv-cmp is an endoprotease that cleaves a peptide bond on the C-terminal side of the lectin domain
250 ontaining triazole and the other with native peptide bonds, on a gold substrate was studied by quartz
251 is accomplished through the formation of two peptide bonds, one between an amine-terminated PEG and t
252 imited to stimulating synthesis of the first peptide bond or that eIF5A functioned on only a subset o
253 e lone pairs (n) of the oxygen (O(i-1)) of a peptide bond over the antibonding orbital (pi*) of C(i)=
254 e lone pairs (n) of the oxygen (O(i-1)) of a peptide bond over the antibonding orbital (pi*) of the c
255 eference for C (gamma)- exo pucker and trans peptide bond, P4H appears to discriminate against the co
256 hat catalyzes cis-trans isomerization of the peptide bond preceding a proline and promotes folding an
257 cis) template possesses a characteristic cis peptide bond preceding Ala(5), which results in type VI
258 hat stabilizes the trans conformation of the peptide bond preceding hyp, endowing hyp with the unusua
259 ivity was highly specific and hydrolysed the peptide bond predominantly on the carboxy side of Glu re
262 inus reveals a less stable His207-Arg208 cis peptide bond, providing a rationalization for its sponta
263 65%, while replacing disulfide A10-A15 by a peptide bond reduced binding affinity to 32% and lowered
264 ntrast, replacing the disulfide A24-B22 by a peptide bond reduced potency proportional to the binding
267 ls cleave FRETS-VWF73 at the V(1607)-T(1608) peptide bond, suggesting that elastase or PR3 expressed
268 NAs embracing two amino acids with a linking peptide bond supports the idea that a direct-RNA-templat
270 -puromycin synthesis-a model assay for first peptide bond synthesis thought to report on certain aspe
271 air-water interface as a favorable venue for peptide bond synthesis, and demonstrate the occurrence o
272 e site of 23S rRNA ribozyme, which catalyzes peptide bond synthesis, was both necessary and sufficien
273 loop in GR is an extreme case of sequential peptide bonds systematically deviating from planarity--a
274 ore, these mutant enzymes hydrolyze the same peptide bond that is recognized by the corresponding ful
275 It would be of interest to know whether peptide bonds that involve the nitrogen atoms of cystein
277 ed target sequence was evident, although the peptide bonds that were susceptible to proteolysis were
278 n indeed lead to proteolysis of the adjacent peptide bond, thereby providing substantive support for
279 the calcium ions not only stabilize the cis peptide bond thermodynamically but also catalyze its for
280 II activation peptide segment at the R37-G38 peptide bond, thrombin assists in activating the transgl
281 from the FAD cofactor acting to polarize the peptide bond through interaction with the carbonyl oxyge
282 he initial event in protein self-splicing, a peptide bond to the nitrogen atom of an internal cystein
284 serine are more susceptible to cleavage than peptide bonds to amino acids that lack reactive side cha
285 been thought to drive the prolyl-containing peptide bonds to the trans configuration needed for trip
286 ssuming fixed bond lengths, bond angles, and peptide bond torsions, as well as ignoring molecular int
288 rgy simulations of the formation of this cis peptide bond using a combined quantum mechanics/molecula
289 trans conformations about the central prolyl peptide bond was investigated by integration of signals
290 The thermodynamic stability of the scissile peptide bond was not dependent on CTRC or Leu-81, as re-
291 sin was incubated with CTRC, the Leu81-Glu82 peptide bond was re-synthesized to establish the same eq
292 Cleavage depended on ATP and the correct peptide bond was shown to be cleaved using a rapid and s
293 fferent cis/trans geometry at the key prolyl peptide bonds were designed, covering a promising confor
296 correct orientation of the Glu(192)-Gly(193) peptide bond, which is likely flipped in the absence of
297 FT-IR spectra confirmed the formation of new peptide bonds, which significantly improved stability of
298 rs, from building blocks linked by olefin or peptide bonds, with a sequence defined by a reconfigurab
300 es RNA polymerase II (pol II) by isomerizing peptide bonds within the pol II carboxy-terminal domain
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