ライフサイエンスコーパス: phyla

1 found in fifteen bacterial and two archaeal phyla.

2 o 29 genera of 19 families in 9 classes of 5 phyla.

3 to consider them representatives of extinct phyla.

4 vertically, as in the majority of bacterial phyla.

5 ally and environmentally important microbial phyla.

6 elonging to the Firmicutes and Bacteroidetes phyla.

7 ly diverse and are found across 23 different phyla.

8 unctionally validated in different bacterial phyla.

9 t constituted 98.18% (+/- 0.22) of the whole phyla.

10 ts as providing biological justification for phyla.

11 arding orthologous genes and pathways across phyla.

12 t cell biological contexts across eukaryotic phyla.

13 cteria coming together irrespective of their phyla.

14 network patterns, are shared across several phyla.

15 riod--is conserved among species within some phyla.

16 iated class of RNAs expressed across diverse phyla.

17 Operational Taxonomic Units belonging to six phyla.

18 arked by the appearance of most major animal phyla.

19 hase kinase 3 (GSK3), appear conserved among phyla.

20 ve revealed numerous little-studied archaeal phyla.

21 hat occurs across different plant and animal phyla.

22 cteria from the WWE3, OP11 and OD1 candidate phyla.

23 c variation in species richness among animal phyla.

24 pathways are conserved across these distant phyla.

25 gration and spindle orientation in these two phyla.

26 invertebrate swimmers across three different phyla.

27 n the behavioral responses to alcohol across phyla.

28 ere affiliated to 58 bacterial and candidate phyla.

29 ermine the abundances of the major bacterial phyla.

30 ole in promoting health and longevity across phyla.

31 predicted to be present across 23 bacterial phyla.

32 using a time-calibrated phylogeny of animal phyla.

33 principles of sensorimotor processing across phyla.

34 "mushroom bodies" occur across invertebrate phyla.

35 anization is evolutionarily conserved across phyla.

36 derlying molecular mechanisms compare across phyla.

37 elonging to the Firmicutes and Bacteroidetes phyla.

38 d warmer, wetter conditions than did younger phyla.

39 tion of energy homeostasis across vertebrate phyla.

40 ozoa, one of the earliest-diverging metazoan phyla.

41 rmicutes, Proteobacteria, and Actinobacteria phyla.

42 rly evolutionary separation of both archaeal phyla.

43 ic site in the 28S rRNA genes of many animal phyla.

44 tory and gustatory systems in animals across phyla.

45 development shared across distantly related phyla.

46 eukaryotic groups, including multiple animal phyla.

47 n exhibit high diversity in different animal phyla.

48 ther they represent novel species, genera or phyla.

49 ment for Proteobacteria and members of other phyla.

50 tinct locus (sub)types found in 23 bacterial phyla.

51 naerobic bacterial genera from nine distinct phyla.

52 nce, suggests structural conservation across phyla.

53 tions that occurred along the roots of these phyla.

54 positive bacteria, and a few other bacterial phyla.

55 in the ratio of Firmicutes to Bacteroidetes phyla.

56 entity) from 47 bacterial and three archaeal phyla.

57 broad range of bacterial genera from various phyla.

58 wn to be widespread across diverse bacterial phyla.

59 ankyrin repeats (ARs) are ubiquitous in all phyla.

60 in vivo functions in a broad range of animal phyla.

61 ained restricted to typical human-associated phyla.

62 sues produced by many organisms from diverse Phyla.

63 presenting one of the most basal of metazoan phyla.

64 system present in diverse bacteria from many phyla.

65 aries considerably among different bacterial phyla.

66 eptides that have been identified in several phyla.

67 conflict pathways found in diverse bacterial phyla.

68 s and ctenophores - and the remaining animal phyla.

69 yla compared to other bacterial and archaeal phyla.

70 ved and essential for enzyme activity across phyla.

71 rt-chain collagens, of non-bilaterian animal phyla.

72 for inhibitors of PSD enzymes across diverse phyla.

73 r diversity across entire fungal classes and phyla.

74 e used to define phylotypic periods in other phyla.

75 ioses with marine invertebrates of different phyla.

76 e highest sequence similarity with candidate phyla (10,11) .

77 ruses, and included a total of six bacterial phyla, 17 bacterial genera, 23 bacterial species, and tw

78 e calculated for the relative abundance of 3 phyla, 2 alpha diversity metrics, and 4 beta diversity m

79 gamma or odor associated oscillations across phyla (40-100Hz in mammals, 20-30Hz in insects, 0.5-1.5H

80 Sequences obtained blasted to 9 phyla, 66 genera, and 401 human oral taxa (HOT) in the 1

81 a major, apparently deep-branching group of phyla (a superphylum).

82 e PCR (qPCR) revealed significant changes in phyla abundance, particularly Verrucomicrobia together w

83 The phyla abundances were affected by the environmental fact

84 cterium, and Bacteroidetes, with the first 3 phyla accounting for more than 90% of the total sequence

85 tect 296 families of eukaryotes, spanning 19 phyla across the catchment of a river.

86 to the rapid appearance of most major animal phyla alive today.

87 The communities dominated by these two phyla also contained distinct populations of sulphate-re

88 bored prokaryotes affiliated with fifty-nine phyla, among which the most abundant were Proteobacteria

89 rs in both reactors were affiliated with the phyla Anaerolinea, Ignavibacteria, and Proteobacteria.

90 el groups, which are additional 54 bacterial phyla and 11 archaeal phyla to those that were previousl

91 Twenty-one phyla and 137 genera were shared by all pigs, whereas 12

92 Five dominant phyla and 15 dominant families comprised 97% and 74%, re

93 A total of 22 phyla and 249 genera were identified from all fecal samp

94 al taxonomy units (OTUs) and, in turn, to 20 phyla and 273 genera of Bacteria or Archaea.

95 MiSeq high-throughput sequencing revealed 22 phyla and 88 genera of the bacteria.

96 homologous to those of non-bilaterian animal phyla and Bilateria.

97 The origin of most animal phyla and classes during the Cambrian explosion has been

98 the early appearances of all well-fossilized phyla and classes, explicit coding of functional charact

99 draft genomes from bacteria representing >35 phyla and documented features that consistently distingu

100 ling pathway controls innate immunity across phyla and embryonic patterning in insects.

101 Phyla and families not represented on the microarray are

102 ion, revealing potential roles for different phyla and family members as well as microbiota-liberated

103 amate receptors (iGluRs) from diverse animal phyla and identified a highly conserved motif, which we

104 es in Firmicutes and fewer in Actinobacteria phyla and more sequences in the genera Bacteroidetes [G-

105 and insects are the two most speciose animal phyla and nematode-insect associations encompass widespr

106 e detected organisms from 24 known bacterial phyla and one archaeal phylum.

107 erences in genome evolution between metazoan phyla and outline the conceptual and technological chall

108 for reducing wiring costs are shared across phyla and point to the possibility of generalizable rule

109 s number among the most diverse invertebrate phyla and represent the most biomedically significant br

110 ion relevant to somatosensory neurons across phyla and submodalities.

111 ein family occurs across different bacterial phyla and varies widely in both protein sequence and cor

112 lacking isolated representatives (candidate phyla) and from as-yet undefined lineages.

113 s of microns up to millimeters across animal phyla, and decrease several orders of magnitude during r

114 ormations that gave rise to the panarthropod phyla, and expound the lobopodian-like morphology of the

115 lated genes are present across diverse plant phyla, and fall within the IGT gene family.

116 h records the rapid emergence of most animal phyla, and for which the triggering and accelerating fac

117 terial phyla including ecologically abundant phyla, and help taxonomically identify 7-38% of 'unknown

118 cations from subspecies (Sulfolobus spp.) to phyla, and of preliminary rooting of deep-branching cand

119 porter (VGLUT), a mechanism conserved across phyla, and this study reports a previously unknown role

120 y valence-encoding interneurons exist across phyla, and valence is typically determined by whether ap

121 is often unsuccessful, while most of the low phyla animals can re-grow many parts of their body after

122 nd that human gut microbes from all dominant phyla are resistant to high levels of inflammation-assoc

123 These disparate phyla are united by their means of moulting, but otherwi

124 lthough it has been allied to such disparate phyla as the Mollusca, Annelida or Chordata, it remains

125 at represent the majority of known bacterial phyla as well as 47 newly discovered phylum-level lineag

126 like cones are present in many invertebrate phyla as well as in chordata, and rods evolved from cone

127 Roseobacter clade), including putative novel phyla, as well as other groups with previously unqualifi

128 a, Cycloclasticus), including putative novel phyla, as well as other groups with previously unqualifi

129 ents in dividing budding yeasts of two major phyla: Ascomycota and Basidiomycota.

130 sms of the Proteobacteria and Actinobacteria phyla associated with rectal mucosa, compared with feces

131 ues occur in all genomes examined across the phyla, averaging one site every 2,000-4,000 base pairs.

132 OTUs were disproportionately drawn from the phyla Bacteroidetes and Proteobacteria.

133 nine species, with representatives from the phyla Bacteroidetes, Firmicutes, Actinobacteria and Prot

134 Abundances of dominant phyla (Bacteroidetes, Firmicutes and Proteobacteria) wer

135 Animals are grouped into ~35 'phyla' based upon the notion of distinct body plans.

136 major lineages that are defined as candidate phyla because they lack isolated representatives.

137 und in bacteria representing eight different phyla, being especially prevalent in Actinobacteria (inc

138 machineries of different phyla, even if the phyla belong to different kingdoms.

139 hyla radiation (CPR) and as yet uncultivated phyla belonging to the DPANN (Diapherotrites, Parvarchae

140 ains are widely distributed across bacterial phyla but multi MCE domain-containing proteins evolved i

141 detected outside germline tissue in multiple phyla, but activity of the pathway in mammalian somatic

142 Flagella exist in all eukaryotic phyla, but neither the mechanism by which flagella grow

143 se of the apical plate in other invertebrate phyla, but that this cell population has been lost or gr

144 ed for chemotaxis have been described across phyla, but the sensorimotor basis of this phenomenon has

145 osynthesis is used in nearly all eubacterial phyla, but the specific RNA structures that regulate rib

146 rs, which promoted their distribution across phyla by horizontal gene transfer.

147 1 are organohalide-respiring microbes of the phyla Chloroflexi and Firmicutes, respectively.

148 Individual wild apes cultivate more phyla, classes, orders, families, genera, and species of

149 naerobic and one microaerophilic) from three phyla common in the gut--Bacteroidetes, Firmicutes and P

150 ation is a pronounced trait of CPR and DPANN phyla compared to other bacterial and archaeal phyla.

151 the progress that can be made through inter-phyla comparisons, and identify future research areas th

152 Together, these three phyla comprise the deuterostomes.

153 Candidate phyla (CP) are broad phylogenetic clusters of organisms

154 nt in low abundance with similar patterns of phyla distribution in clinically stable patients and pat

155 record confirms that all three scalidophoran phyla diverged no later than the Cambrian Period.

156 Conservation across phyla emphasizes the long-standing importance of the Psp

157 e genes were found across multiple bacterial phyla, encoding antibiotic resistance, drug metabolism,

158 ave uncovered a major radiation of candidate phyla encompassing the Patescibacteria superphylum.

159 ng animal evolution is where early branching phyla, especially sponges and comb jellies (sea gooseber

160 ries of 25 archaeal species belonging to the phyla Eury-, Cren- and Thaumarchaeota facilitates their

161 e the translational machineries of different phyla, even if the phyla belong to different kingdoms.

162 typically difficult to reconcile with modern phyla, examination of the morphology, ecology, and tapho

163 of unicellular eukaryotes covering different phyla exhibit both characteristic sizes and universal fe

164 Animals across various phyla exhibit odor-evoked innate attraction behavior tha

165 these data allow comparison across metazoan phyla, extending beyond earlier within-phylum transcript

166 The gut microbiotas were dominated by three phyla: Firmicutes (62.9%), Proteobacteria (29.9%) and Fu

167 l sputum samples contained 5 major bacterial phyla: Firmicutes, Proteobacteria, Actinobacteria, Fusob

168 with abrupt changes in relative abundance of phyla from sample to sample.

169 ule cytoskeletons regulate cell shape across phyla, from bacteria to metazoans.

170 h tumors supported altered abundances in the phyla Fusobacteria, Firmicutes, Actinobacteria and Prote

171 High-diversity CSTs and specific bacterial phyla (Gardnerella vaginalis and Prevotella bivia) were

172 The 47 phyla including 11 dominant phyla (>1%) in E. splendens rhizosphere were presented.

173 We also discover that several phyla have a strong preference for bacteriocin genes, su

174 alyses provide evidence for their existence, phyla have also been criticized as lacking an objective

175 Organisms from many different phyla have evolved an impressive arsenal of light manipu

176 Striking body-plan differences among these phyla have historically hindered the identification of a

177 longing to Proteobacteria and Actinobacteria phyla; however, similar to abiotic foulant, their relati

178 Across phyla, HSCs arise from hemogenic endothelium in the vent

179 nobacteria, and Firmicutes were the top five phyla identified from all samples.

180 Less than 50% of phyla identified via amplicon sequencing were recovered

181 utes and Spirochaetes were the most abundant phyla in A. wheeleri, in contrast to N. corniger where S

182 tes and Bacteroidetes were the most dominant phyla in all samples.

183 ble variety of organisms from little studied phyla in Crystal Geyser (Utah, USA), a site where deeply

184 Nematodes comprise one of the largest phyla in the animal kingdom, both in terms of individual

185 e' to the explosive diversification of these phyla in the Cambrian, c. 540-530 million years ago.

186 es and Actinobacteria were also the abundant phyla in the given samples.

187 n-associated Bacteroidetes--one of two major phyla in the gut--also encode machinery for contact-depe

188 Similarities in the distribution of phyla in the root microbiomes of rice and other plants s

189 Although nervous systems are diverse across phyla, in many taxa the larva forms an anterior concentr

190 ed 101 distinct bacterial strains spanning 6 phyla including (1) novel strains with <98% 16S rRNA seq

191 The 47 phyla including 11 dominant phyla (>1%) in E. splendens

192 l conserved protein are found within diverse phyla including a number of parasitic organisms.

193 e first viral sequences for 13 new bacterial phyla including ecologically abundant phyla, and help ta

194 detoxify H2O2, are widely distributed in all phyla, including cyanobacteria.

195 reference conservation, although not for all phyla, including the phylum with the highest average rel

196 covery of shared behavioral processes across phyla is a significant step in the establishment of a co

197 ivation, making it one of the most enigmatic phyla known.

198 Bacteria from phyla lacking cultivated representatives are widespread

199 on with recently published work on bacterial phyla lacking cultivated representatives, reveals a fasc

200 wide diversity of bacteria and archaea from phyla lacking isolated representatives (candidate phyla)

201 s revealed generally similar patterns at the phyla level but they were different at the genus level.

202 were the predominant bacterial group at the phyla level with over 50% frequency in all steps while t

203 t a comparison of pseudogenes spanning three phyla, leveraging the completed annotations of the human

204 e morphological disparity of lophotrochozoan phyla makes it difficult to predict the morphology of th

205 ety of sources by the early-diverging fungal phyla Microsporidia and Cryptomycota.

206 Here we show that in a range of metazoan phyla, mitotic spindle length decreased with cell size a

207 of Esrp-dependent splicing programs between phyla, most developmental defects observed in vertebrate

208 Across animal phyla, motion vision relies on neurons that respond pref

209 logical observations demonstrate that across phyla, mushroom body-like centers share a neuroanatomica

210 with cirrhosis had lower abundances of five phyla, namely Tenericutes, Cyanobacteria, Spirochaetes,

211 ection, but is uniquely missing in two major phyla, nematoda and ascomycota.

212 Bacteria from these phyla occur in diverse environments and are thought to m

213 tially, and switching between different host phyla occurred multiple times in palaemonid evolutionary

214 tructures are widely distributed across many phyla of bacteria, seven of the RNAs are narrowly distri

215 Consistently, here we demonstrate that the phyla of fecal microbiota differ substantially between L

216 ia, and Actinobacteria, the four most common phyla of gut bacteria.

217 n marine Bacteroidetes but modified in other phyla of marine heterotrophic bacteria.

218 They commonly occurred in the phyla of Proteobacteria, Actinobacteria, Firmicutes, and

219 rotein synthesis machineries of two distinct phyla of the Animal kingdom, insects of Arthropoda and m

220 into pathway evolution between two distinct phyla of the fungal kingdom.

221 ction representing members of the four major phyla of the poultry microbiota was assembled, including

222 his production was examined according to the phyla of the tested strains and the type of chelating fu

223 s of all eukaryotic super-groups and several phyla of uncertain position.

224 attacked by numerous parasites from diverse phyla, often simultaneously or sequentially.

225 their evolutionary relationships with extant phyla (Onychophora, Tardigrada and Euarthropoda).

226 ision of labor among differing highly social phyla points to a resemblance of outcomes arising from v

227 ix younger phyla, possibly because the older phyla possess a zoospore stage that is vulnerable to dro

228 Animals from diverse phyla possess neurons that are activated by the product

229 ogenetically conserved among the six younger phyla, possibly because the older phyla possess a zoospo

230 unavailable from the vast majority of animal phyla-potentially biasing our overall perspective of the

231 nd support for this hypothesis in that older phyla preferred significantly lower latitudes and warmer

232 00 viral sequences, revealing nine microbial phyla previously unreported to be infected by viruses.

233 t communities are dominated by the bacterial phyla Proteobacteria and Firmicutes.

234 Obligate methanotrophs belonging to the Phyla Proteobacteria and Verrucomicrobia require oxygen

235 ety of bacteria in C. elegans habitats, with phyla Proteobacteria, Bacteroidetes, Firmicutes, and Act

236 ized by increased abundance of the bacterial phyla Proteobacteria, Deferribacteres, and TM7, among wh

237 Three phyla, Proteobacteria, Tenericutes and TM7, and 11 gener

238 one of the earliest-branching extant animal phyla, providing a unique opportunity to explore the evo

239 Molluscs, one of the most disparate animal phyla, radiated rapidly during the early Cambrian period

240 ene surveys, mostly members of the Candidate Phyla Radiation (CPR) and as yet uncharacterized Archaea

241 duced organisms from the bacterial candidate phyla radiation (CPR) and as yet uncultivated phyla belo

242 al fungi, viruses, phages, and the candidate phyla radiation (CPR) group of ultrasmall bacteria have

243 The Candidate Phyla Radiation (CPR) is a large group of bacteria, the

244 ry history, and describe it as the candidate phyla radiation (CPR).

245 ultivated, groundwater-associated, Candidate Phyla Radiation bacteria only rarely replicate quickly i

246 systems encoded by members of the Candidate Phyla Radiation.

247 n and putative microbes, including Candidate Phyla Radiation.

248 o present in some but not all non-bilaterian phyla, raising the question of how Hox-TALE interactions

249 rage was broad, particularly for animals (22 phyla recorded), but 35.6% of OTUs detected via metabarc

250 Across phyla, reduced nicotinamide adenine dinucleotide phospha

251 rosequencing data revealed that the dominant phyla related to Firmicutes, Bacteroidetes, and Proteoba

252 of visual neuropils evolved among different phyla remain open.

253 The position of Chaetognatha among metazoan phyla remains equivocal-neither morphological nor molecu

254 Non-bilaterian phyla represent key lineages for exploring the evolution

255 used for very different applications across phyla, requiring different precision-recall trade-offs.

256 s vulnerable to drought, whereas the younger phyla retain protective cell walls throughout their life

257 At resolution, these phyla returned to baseline, except for synergistetes.

258 Searches for the Psp system across phyla reveal conservation of only one protein, PspA.

259 Comparison of PSD sequences across multiple phyla reveals a uniquely conserved aspartic acid within

260 ass averaging 581 nt and present in multiple phyla, several highly conserved and widespread ncRNA cla

261 creased, and representation of the bacterial phyla shifts from a predominance of Gammaproteobacteria

262 BMC loci found in seven candidate bacterial phyla (six from single-cell genomic studies) to the LoCl

263 bloom-forming microalgae spanning different phyla, some of public health concerns (Prorocentrum) in

264 tion includes 18 model organisms spanning 10 phyla/subphyla of bacteria and archaea that were sequenc

265 Additionally, comparisons with other phyla suggest that a delay in trunk development is a fea

266 been defined previously for three of the ten phyla, suggesting that transcriptional circuits and sign

267 this "long tail" of rare organisms belong to phyla that are also represented by abundant organisms.

268 Many microbial phyla that are widely distributed in open environments h

269 robes and even entire divisions of bacterial phyla that have evaded cultivation and have yet to be se

270 ntial to the evolution of other 'successful' phyla: the exoskeleton in ecdysozoan invertebrates and t

271 idaria and Ctenophora are the first metazoan phyla to evolve tissue-level organization and differenti

272 e eye design, mechanisms have evolved across phyla to stabilize gaze.

273 dditional 54 bacterial phyla and 11 archaeal phyla to those that were previously described using pyro

274 ving Japanese coastal marine species from 16 phyla transported over 6 years on objects that traveled

275 ystem in prokaryotes, while inter- and intra-phyla variations within the system indicate adaptation t

276 The relative abundances of some dominant phyla varied along the pH gradient, and the enrichment o

277 owing comparative genomics in four different phyla (Vertebrate, Fungi, Metazoan and Plants).

278 ved from commensal microbiota act in diverse phyla via conserved molecular pathways to promote health

279 structures are conserved across eubacterial phyla, we created multiple sequence alignments represent

280 acteroidetes, Firmicutes, and Proteobacteria phyla, we found that potent Nod-like receptor-stimulatin

281 orted conservation of mid-development within phyla, we propose that a phylum may be defined as a coll

282 to archaeal Thaumarchaeota and Euryarchaeota phyla were also identified.

283 The most abundant phyla were Firmicutes [mean relative abundance (SD), 42.

284 recently, about half of all known bacterial phyla were identified only from their 16S ribosomal RNA

285 In total, 34 bacterial and two archaeal phyla were identified, with most sequences belonging to

286 rofiles of fungi, archaea and most bacterial phyla were significantly different among seasons.

287 The bacterial phyla were similar in wild type and EPI-/- skin.

288 The bacterial phyla were similar in wild-type and EPI-/- skin.

289 h development; 31 species, spanning 11 major phyla, were investigated for the occurrence of the sulfi

290 ppa-carrageenases from two distant bacterial phyla, which belong to glycoside hydrolase family 16 and

291 bacteria of the Firmicute and Bacteroidetes phyla, which primarily metabolize peptones and amino aci

292 thin phylum-level lineages called "candidate phyla," which lack isolated representatives and are poor

293 ernalised by members of at least three major phyla with different feeding mechanisms.

294 hree dataset tested, which represented three phyla with different ranges of species diversity and dif

295 ent arsenoriboside species are found in each phyla with glycerol and phosphate arsenoribosides produc

296 belong to novel lineages, and two represent phyla with no previously sequenced genome.

297 Dolphins harbour 30 bacterial phyla, with 25 of them in the mouth, several abundant bu

298 teria are among the most diverse prokaryotic phyla, with morphotypes ranging from unicellular to mult

299 We resolved two new phyla within a major, apparently deep-branching group of

300 , 50-100% of organisms sampled from specific phyla would evade detection in typical cultivation-indep