ライフサイエンスコーパス: phylogenetically

1 om Devonian fishes, both morphologically and phylogenetically.

2 sting of 232 Laccaria specimens was analyzed phylogenetically.

3 omplex (cc11), ET-15, and clustered together phylogenetically.

4 re generated by deep sequencing and analyzed phylogenetically.

5 e showed that the elk lesion treponemes were phylogenetically almost identical to those isolated from

6 rase (pol) sequences from case patients were phylogenetically analyzed, and potential risk factors as

7 The phylogenetically ancient neuropeptide oxytocin has been

8 Well adapted to a phylogenetically ancient tetherin tail truncation in the

9 and third-wave viruses remain closely linked phylogenetically and antigenically, even subtle molecula

10 Hxt11, Hxt13, Hxt15, Hxt16 and Hxt17 are phylogenetically and functionally distinct from known po

11 The enteric microbiota is also phylogenetically and functionally simple relative to the

12 1 homologues in the vertebrate lineage, both phylogenetically and functionally.

13 We found that the 2014 EBOV has become more phylogenetically and genetically diverse from July to No

14 by sequencing and de novo assembly of seven phylogenetically and geographically representative acces

15 antagonism should mostly be prevalent among phylogenetically and metabolically similar species.

16 rains isolated at a coastal time series were phylogenetically and physiologically characterized revea

17 BONCAT was evaluated with a range of phylogenetically and physiologically diverse archaeal an

18 ancient phylum Actinobacteria is composed of phylogenetically and physiologically diverse bacteria th

19 that we may expect future assemblages to be phylogenetically and possibly functionally depauperate i

20 on genomic analyses of 92 genomes from eight phylogenetically and reproductively isolated lineages of

21 predicts clonal relationships that are both phylogenetically and spatially plausible.

22 A general synthesis of phylogenetically and structurally different tricyclic an

23 CS converter gene families and identified a phylogenetically and structurally distinctive monophyly

24 ers of the I. ricinus defensin family differ phylogenetically and structurally; nevertheless, the cys

25 These phylogenetically and taxonomically diverse communities w

26 rpin resolution, representing a link between phylogenetically, and mechanistically different recombin

27 But, to achieve this, phylogenetically appropriate comparisons of genomes of f

28 a single consensus sequence, which could be phylogenetically assigned to Wolbachia of the supergroup

29 Our results confirm that phylogenetically basal attine farming has been very succ

30 in development in an ontogenetic series of a phylogenetically basal chondrichthyan, the elephant shar

31 MZ and the nature of retinal glia in species phylogenetically bridging amphibians and birds.

32 This capacity for mutualism is phylogenetically broad, extending to other Chlamydomonas

33 oxyBAC is phylogenetically classified as a Rieske-type oxygenase (

34 Phylogenetically classifying and optimal construction of

35 ent, while pathogens are linked to groups of phylogenetically close reservoirs.

36 es resulted largely from interaction between phylogenetically closely related and/or sympatric specie

37 ich geometrid assemblage, while exclusion of phylogenetically closely related species becomes increas

38 man development stages compare with those in phylogenetically closely related species.

39 The H7N2 viruses were phylogenetically closely related to each other and to vi

40 Strain SY is phylogenetically closely related to Paracoccus niistensi

41 5 bp, and 171,454 bp, respectively, and were phylogenetically closely related to prasinoviruses (Phyc

42 a species in a worm-hunting clade, which is phylogenetically closely related to the fish-hunting con

43 epresent distinct cycloviral species, albeit phylogenetically closely related.

44 indirect influence was also stronger between phylogenetically closer plant species and was independen

45 al samples from Asian black bears, a species phylogenetically closer to the giant panda, in our analy

46 Kinetoplastid SepSecS enzymes are phylogenetically closer to worm SepSecS.

47 terid species, but not in the genomes of the phylogenetically closest bat families, Vespertilionidae

48 in bulk soil and root endosphere tend to be phylogenetically clustered and at the same time exhibit

49 t and low radiative forcing signature) had a phylogenetically clustered community dominated by Acidob

50 nomic scales, communities were significantly phylogenetically clustered while degree of clustering de

51 These rhesus monkey adenoviruses phylogenetically clustered with the poorly described ade

52 parasite communities in one population were phylogenetically clustered, but there was otherwise no c

53 d, suggesting that functional traits are not phylogenetically conserved across this chronosequence.

54 ted in the vicinity of the recoding site are phylogenetically conserved among Umbraviruses.

55 Sleep is an essential and phylogenetically conserved behavioral state, but it rema

56 dings demonstrate an interaction between two phylogenetically conserved behaviors, and suggest that p

57 The habenula is a phylogenetically conserved brain structure in the epitha

58 ression data and a genome-wide definition of phylogenetically conserved CHR promoter elements.

59 ons as a model system, we show here that the phylogenetically conserved COE-type transcription factor

60 Lipid droplets (LDs) are phylogenetically conserved cytoplasmic organelles that s

61 ents are controlled cell autonomously by the phylogenetically conserved Doublesex homolog dmd-3, whic

62 We assessed whether bacteria exhibited phylogenetically conserved ecological strategies in resp

63 Tyrosyl-DNA phosphodiesterase (TDP1) is a phylogenetically conserved enzyme critical for the remov

64 Recent reports suggest phylogenetically conserved habitat preferences among bac

65 Although this gene is phylogenetically conserved in many taxa, its physiologic

66 we present the NMR solution structure of the phylogenetically conserved ISS stem loop.

67 ion is mediated by the exocyst, an essential phylogenetically conserved octameric protein complex.

68 within the cytosol of cells are stored in a phylogenetically conserved organelle called the lipid dr

69 n assays, we found that tepsin comprises two phylogenetically conserved peptide motifs, [GS]LFXG[ML]X

70 Here, we show that the phylogenetically conserved proteasome subunit Dss1 (Sem1

71 Semaphorins are phylogenetically conserved proteins expressed in most or

72 The hypothalamus is among the most phylogenetically conserved regions in the vertebrate bra

73 y of small nuclear ribonucleoproteins uses a phylogenetically conserved RNA recognition motif (RRM1)

74 A phylogenetically conserved RNA structure within the NS5B

75 RNA, we undertook a comprehensive search for phylogenetically conserved RNA structures and examined t

76 Although the phylogenetically conserved RNA-binding proteins TRBP and

77 We provide evidence that the phylogenetically conserved RSE of the carmovirus Turnip

78 60-nt GTPase center (GAC) of 23S rRNA has a phylogenetically conserved secondary structure with two

79 stitution lies C-terminally adjacent to this phylogenetically conserved sequence.

80 RgsA is a phylogenetically conserved small regulatory RNA (sRNA) i

81 twister ribozyme is reported that lacks the phylogenetically conserved stem P1 while retaining wild-

82 pseudoknot fold, despite the absence of the phylogenetically conserved stem P1, rationalizing the po

83 l pseudoknot that is not compatible with the phylogenetically conserved structure and an RNA bridge t

84 that this alternative structure, and not the phylogenetically conserved structure, is the predominant

85 nd the pseudoknot is not compatible with the phylogenetically conserved structure.

86 The basal ganglia are phylogenetically conserved subcortical nuclei necessary

87 ting ligands and two cognate receptors--this phylogenetically conserved system serves as a prototype

88 A dimorphically expressed and phylogenetically conserved transcription factor is both

89 y inputs, as investigated in the lamprey - a phylogenetically conserved vertebrate.

90 plant-specific NETWORKED protein, NET3C, and phylogenetically conserved vesicle-associated membrane p

91 analysis of SIRT6 Cys144, which lies in its phylogenetically conserved zinc-associated Cys-X-X-Cys m

92 freshwater bacteria to lake habitats can be phylogenetically conserved, although the levels of conse

93 ution, yet which ecophysiological traits are phylogenetically conserved, and whether these traits are

94 aturated fatty acids induce a non-canonical, phylogenetically conserved, autophagic response that in

95 n, is controlled by distinct combinations of phylogenetically conserved, class-specific transcription

96 ased regulation of heterologous cells may be phylogenetically conserved.

97 rp1 isoforms through alternative splicing is phylogenetically conserved; strongly suggesting it is bi

98 Using wood sampled from a phylogenetically constrained set of 28 Eucalyptus specie

99 Using a phylogenetically controlled analysis of hawkmoth caterpi

100 Subsequent phylogenetically controlled comparative analyses reveale

101 We use phylogenetically controlled comparative methods to demon

102 Phylogenetically, Decemunciger appears to be a sister cl

103 s that contain subfamilies, and we give them phylogenetically defined, unranked names: Cymalamiina, S

104 unction is governed by the interplay between phylogenetically dependent and independent traits, and i

105 ansferred DNA, as an explanation of observed phylogenetically determined patterns of restricted recom

106 We performed whole-genome screenings for phylogenetically diagnostic retrotransposon insertions i

107 dental characteristics in three herbivorous, phylogenetically disparate dinosaur clades (Sauropodomor

108 a feature of this group of viruses infecting phylogenetically disparate hosts, suggesting that this e

109 t in actinobacteria and found in bacteria as phylogenetically distant as proteobacteria.

110 gmented animals are found in major clades as phylogenetically distant as vertebrates and arthropods.

111 ties of the machine are well conserved among phylogenetically distant bacterial species.

112 n the MBfRs had a high acceptor loading were phylogenetically distant from and less diverse than the

113 ydroxycinnamoyl transferase, PvHCT-Like1, is phylogenetically distant from HCTs or HQTs, but exhibits

114 platform that is serologically distinct and phylogenetically distant from VSV.

115 RALF homologues are found across a number of phylogenetically distant groups of fungi, many of which

116 e of C. neoformans virulence known to infect phylogenetically distant hosts.

117 resence of these rate motifs is conserved in phylogenetically distant members of the Arabidopsis (Ara

118 s suum against subsequent infection with the phylogenetically distant nematode Nippostrongylus brasil

119 throughout the fungal kingdom as well as in phylogenetically distant oomycetes or "pseudofungi" spec

120 work motif may have evolved independently in phylogenetically distant organisms.

121 on to attract far away, motile cells of even phylogenetically distant species by altering their membr

122 the compatibility of the U6atac 3' end from phylogenetically distant species in a human U6atac backg

123 region are conserved among SS4 proteins from phylogenetically distant species, such as Arabidopsis an

124 he microbial communities associated with two phylogenetically distant tree species of the same age, d

125 -syn modulates similar molecular pathways in phylogenetically distant vertebrates.

126 sts common facial expression in species more phylogenetically distant, but sharing a need for common

127 genetic elements or helix substitutions with phylogenetically-distant bacteria.

128 Soil bacterial communities were phylogenetically distinct across the chronosequence.

129 The resistant viral population was phylogenetically distinct and associated with a genetic

130 ton using flow cytometry and qPCR assays for phylogenetically distinct Bathycoccus clades BI and BII

131 s demonstrated that SPI is associated with a phylogenetically distinct clade of NAG01 Perkinsea.

132 leotide polymorphism analyses identified two phylogenetically distinct clades of S Senftenberg, desig

133 ue epoxyketone sequence tags, falling into 6 phylogenetically distinct clades.

134 anel of nucleocapsid and spike proteins from phylogenetically distinct CoVs.

135 Two phylogenetically distinct EF-P modification pathways hav

136 itat generalists that were individually more phylogenetically distinct from co-occurring species than

137 -ZdrA encode nearly identical NLRs that are phylogenetically distinct from known immunity-activating

138 Rebounding plasma HIV-1 sequences were phylogenetically distinct from proviral HIV-1 DNA detect

139 sion skewed toward the shoot across multiple phylogenetically distinct groups of NLRs.

140 Identifying phylogenetically distinct lineages and understanding the

141 ectral tuning of phytochromes has evolved in phylogenetically distinct lineages of aquatic photosynth

142 Here, we show that they form two phylogenetically distinct lineages, each close to differ

143 EV-D68 isolates in Kansas City, manifest as phylogenetically distinct lineages, indicative of multip

144 ase molybdenum iron (MoFe) proteins from two phylogenetically distinct nitrogenases (Azotobacter vine

145 Therefore, when phylogenetically distinct non-natives replace native pla

146 ity only occurred for immature herbivores on phylogenetically distinct non-natives vs. natives.

147 More than 30 structurally and phylogenetically distinct proteins are embedded in the I

148 y the existence of a previously unrecognized phylogenetically distinct species despite a long history

149 lyses revealed that the strains comprised 23 phylogenetically distinct species, all but two of which

150 ed from RSF1010, which replicates in several phylogenetically distinct strains including a new experi

151 e constituted a clonal group whereas NF1 was phylogenetically distinct.

152 vidence that forisome tails are encoded by a phylogenetically-distinct branch of the SEO gene family.

153 or part of the M protein was replaced by its phylogenetically divergent counterpart from severe acute

154 y constraint among geographically distal and phylogenetically divergent HNVs to maintain the function

155 Fitness effects of point mutations in three phylogenetically divergent IGPS proteins during adaptati

156 processes requires experimentally tractable, phylogenetically divergent organisms that differ morphol

157 in their tails are found in a wide range of phylogenetically divergent organisms, such as humans and

158 spatially correlated groups are consortia of phylogenetically diverse and metabolically different mic

159 saria associated with veterinary mycoses are phylogenetically diverse and typically can only be ident

160 Behavioral evidence from phylogenetically diverse animals and from humans suggest

161 A survey of GMKs from phylogenetically diverse bacteria shows that the (p)ppGp

162 clusters were analyzed in approximately 150 phylogenetically diverse bacteria, and the modifications

163 In phylogenetically diverse bacteria, the conserved protein

164 een implicated in direct Mn(II) oxidation by phylogenetically diverse bacteria.

165 ly over a 1,000,000-fold expression range in phylogenetically diverse Bacteroides species.

166 unction (PrfA(-)/LLO(-)) mutants belonged to phylogenetically diverse clades of L. monocytogenes, and

167 ex chromosomes have evolved independently in phylogenetically diverse flowering plant lineages.

168 mplicon sequencing on samples collected from phylogenetically diverse herbivorous hosts.

169 pathogenic gammaretroviruses present across phylogenetically diverse host species of Australasian ma

170 dly identify the immunomodulatory effects of phylogenetically diverse human gut microbes.

171 ed and may reflect conserved functions among phylogenetically diverse MF myosins.

172 Phylogenetically diverse microbes that produce long chai

173 Volatile compounds (VCs) emitted by phylogenetically diverse microorganisms (including plant

174 A wide range of phylogenetically diverse microorganisms couple the reduc

175 sarium species were shown to be prevalent in phylogenetically diverse native grasses, colonizing mult

176 identify groups of spatially correlated but phylogenetically diverse organisms.

177 tant implications for growth-rate control in phylogenetically diverse organisms.

178 overcome in evolutionary time, resulting in phylogenetically diverse parasite communities feeding on

179 A phylogenetically diverse range of shade-dwelling plant s

180 rotein IX and can replicate efficiently in a phylogenetically diverse range of species.

181 ted empirically across a morphologically and phylogenetically diverse range of taxa.

182 eoretical framework, stomatal traits of this phylogenetically diverse sample reflect spatially optima

183 to compare the activity of three related but phylogenetically diverse sicariid toxins against a diver

184 O2 , and vapor pressure deficit (VPD) for 13 phylogenetically diverse species native to open and shad

185 Phylogenetically diverse tree nut allergens can activate

186 Cretaceous) and are both morphologically and phylogenetically diverse, indicating that snakes underwe

187 (i) a model, defined 15-member consortium of phylogenetically diverse, sequenced human gut bacterial

188 dopteran midgut aminopeptidases N (APNs) are phylogenetically divided into eight clusters, designated

189 Form I Rubiscos are phylogenetically divided into green- and red-type.

190 T3SS are phylogenetically divided into several families based on

191 ribe one of the stratigraphically lowest and phylogenetically earliest members of the avian stem line

192 We conducted phylogenetically explicit analyses using glucosinolate p

193 We present results of phylogenetically extended searches for homologs of two p

194 odular Calcium binding protein) is conserved phylogenetically from vertebrates to arthropods.

195 ng enzymes, toxins, cell wall components and phylogenetically highly conserved cross-reactive protein

196 f jawed vertebrate rods are present in their phylogenetically homologous photoreceptors in lamprey: c

197 A higher-order function may evolve phylogenetically if it is demanded by multiple domain-sp

198 The myriapods are a phylogenetically important group in the arthropod radiat

199 Phylogenetically independent contrasts indicated correla

200 in radiation-resistant species in multiple, phylogenetically independent groups of bacteria.

201 ared to those before 2002, tended to cluster phylogenetically, indicating selective expansion of spec

202 generate a robust genotyping scheme that is phylogenetically informative and compatible with a range

203 oungulata) and Macrauchenia (Litopterna) for phylogenetically informative protein sequences.

204 selected cases 102 virtually homoplasy-free, phylogenetically informative retroelements to draw a com

205 Additionally, our assay is the most phylogenetically informative typing scheme available for

206 However, the recovery of phylogenetically-informative protein domains can be up t

207 Here, we conducted phylogenetically informed biochemical characterization o

208 This general model was tested within a phylogenetically informed framework using a data set com

209 human and ape hand-length proportions using phylogenetically informed morphometric analyses and test

210 ERAPHIM ("Studying Environmental Rasters and PHylogenetically Informed Movements") is a suite of comp

211 es of life-history strategies, obtained from phylogenetically informed principal component analysis:

212 newly sequenced wood decayers, and performed phylogenetically informed principal-components analysis

213 This taxon is phylogenetically intermediate between the oldest basal t

214 ZIKV genomes from Brazil are phylogenetically interspersed with those from other Sout

215 w that local environmental niches are highly phylogenetically labile for both seedlings and adult tre

216 recently infected individuals with multiple phylogenetically linked HIV-1 founder variants represent

217 Of 60 possible phylogenetically linked pairings with the 43 women young

218 For the 92 possible phylogenetically linked pairings with the 56 women aged

219 rted condomless sex with other partners), no phylogenetically linked transmissions occurred over elig

220 egative partner became infected to determine phylogenetically linked transmissions.

221 Tarsiers are phylogenetically located between the most basal strepsir

222 suggest conservation of ontogenetically and phylogenetically lower-order systems in adults' numerica

223 We phylogenetically mapped putative WGDs as identified from

224 organization between radiation-resistant and phylogenetically matched, nonresistant species argues ag

225 ecies (Metasequoia glyptostroboides) that is phylogenetically midway between the fern and angiosperm

226 US strains are phylogenetically more closely related to European and As

227 ons that experienced stronger extinction are phylogenetically more clustered, indicating that non-ran

228 Shawo belong to the C4 subgenotype, and are phylogenetically more related to those from the distant

229 es of mycoheterotrophic and green plants are phylogenetically more similar within than between these

230 The new volant taxa are phylogenetically nested with arboreal eleutherodonts.

231 lphaproteobacterial genomes by sequencing 18 phylogenetically novel species.

232 pathological and physiological data from two phylogenetically old and subconscious pathways, the reti

233 l vision is slow to develop in infancy, this phylogenetically old optokinetic system, which is normal

234 se data therefore support the existence of a phylogenetically old subcortical pathway providing fast,

235 or vision in the larger brain of a locust, a phylogenetically old, flying insect, we adapted serial b

236 tle is known, however, about the role of the phylogenetically old, functionally very important brains

237 tion and regionalization is perturbed in the phylogenetically older archicortex of the adult reeler m

238 brain areas, determining the contribution of phylogenetically older pathways is crucial to understand

239 cortex massively innervates the brainstem, a phylogenetically older structure, via cortico-fugal axon

240 learning mechanisms might have been glued to phylogenetically older subcortical reward systems, reinf

241 nherent plasticity and functional breadth of phylogenetically older visuomotor circuits that can expr

242 Sharks and other cartilaginous fish are the phylogenetically oldest living organisms that rely on an

243 reticulospinal fibers, which are part of the phylogenetically oldest motor command system, spontaneou

244 ertebrates including the lamprey, one of the phylogenetically oldest vertebrates.

245 elevations were associated with the loss of phylogenetically or functionally redundant species, sugg

246 genus: Pongo), the only Asian great apes and phylogenetically our most distant relatives among extant

247 We created phylogenetically paired native and nonnative plant commu

248 The genus Neolecta defines an enigma: phylogenetically placed in a related group containing mo

249 e least studied bioluminescent organisms are phylogenetically rare fungi-only 71 species, all within

250 ding evidence for a mechanism to explain why phylogenetically rare species are more likely to become

251 Phylogenetically rare species escape disease pressure.

252 Recalibration of molecular clocks to exclude phylogenetically reassigned Palaeozoic taxa results in e

253 In phylogenetically recent muscomorph flies, like Drosophil

254 We phylogenetically reconstructed 47-residue ancestral moti

255 information dating back to 1979, along with phylogenetically reconstructed HIV-1 sequences dating ba

256 igate wetland species, communities were more phylogenetically related as flooding increased.

257 lts enabled wheat differentiation from other phylogenetically related cereals, namely barley, rye and

258 nct from the previously published APOBEC and phylogenetically related deaminase structures, as it is

259 t parasites are more commonly shared between phylogenetically related host species pairs.

260 hat can functionally replace each other, the phylogenetically related human pathogens like Listeria m

261 facilitator superfamily (MFS) is encoded by phylogenetically related intracellular gammaproteobacter

262 sess a similar genetic toolbox consisting of phylogenetically related MADS domain proteins.

263 These esters were produced by eight phylogenetically related strains of Saprochaete genus.

264 quences retrieved from the extracted DNA are phylogenetically related to actual Archaea inhabiting su

265 our study suggests that ODDSOC2 is not only phylogenetically related to FLC in eudicots but also fun

266 proteins (SLPs; AtSLP1 and AtSLP2) that are phylogenetically related to human SLP2, a protein involv

267 Bacteria phylogenetically related to known haloalkaline sulfate a

268 ureus protein A gene (spa) type t292 and are phylogenetically related to MRSA lineage USA300.

269 Although SsMBV1 is phylogenetically related to RnMBV1, SsMBV1 is markedly d

270 runcated galE2 remnant in Region D' was also phylogenetically related to the bi-functional galE of th

271 xin 27 (SNX27) contains a PDZ domain that is phylogenetically related to the PDZ domains of the NHERF

272 dius and Polysphondylium pallidum, which are phylogenetically related to the Salmonella chitinase, as

273 ion identified four diterpene synthase genes phylogenetically related to those found in diverged plan

274 port the isolation and characterization of a phylogenetically related yet functionally distinct N-met

275 We found two phylogenetically related, highly virulent viruses (genus

276 Although initiators and loaders are phylogenetically related, the mechanisms they use for ac

277 orthologs VERNALIZATION1 (VRN1) and VRN3 in phylogenetically representative taxa under cold and cont

278 This phylogenetically restricted phenomenon is not biogeograp

279 Phylogenetically restricted terpenoids are implicated in

280 ow that late Cenozoic climate change induced phylogenetically selective regional extinction of northe

281 Previous studies have phylogenetically separated WNV strains into two main gen

282 Phenotypically and phylogenetically the environmental E. faecalis were indi

283 The yolk sac is phylogenetically the oldest of the extraembryonic membra

284 Phylogenetically these bat Mx1 genes cluster closely wit

285 Phylogenetically they can be divided into three groups.

286 Although grouped phylogenetically together, we show that the Cas13a enzym

287 was an evolutionary chimera, with 25% of its phylogenetically tractable nucleus-encoded proteins deri

288 samples are prescreened to identify the most phylogenetically unique gene sequences and molecules ass

289 Symbionts that are phylogenetically unique to sponges do not disproportiona

290 Moreover, the widespread but phylogenetically unrelated distribution of B12 auxotroph

291 s to switch resistance specificities between phylogenetically unrelated pathogens.

292 This mechanism, likely phylogenetically very old, explains several types of mir

293 teractions between toxins and receptors from phylogenetically well-defined lineages can uncover molec

294 e key microstructural features are conserved phylogenetically while others show substantial variation

295 sociated protein (TsaP), was identified as a phylogenetically widely conserved component of the secre

296 of the ligand binding domains of most of the phylogenetically widespread classes of riboswitches, eac

297 Sex-limited mimicry is phylogenetically widespread in the swallowtail butterfly

298 t B/Yamagata-lineage viruses (83%) clustered phylogenetically with the prior (ie, 2012-2013) season's

299 As EILV groups phylogenetically within the mosquito-borne virus clade o

300 ealed that male reproductive cells express a phylogenetically younger transcriptome than other plant