ライフサイエンスコーパス: phylogeographic

1 loci that previously have been shown to have phylogeographic affinity have been analyzed for two popu

2 so highlights how sampling bias can confound phylogeographic analyses and demonstrates the importance

3 Results from phylogeographic analyses are consistent with Isla Mocha

4 s in South America, we performed genetic and phylogeographic analyses of all available South American

5 Molecular and phylogeographic analyses of B2a mitogenomes, which are a

6 Phylogeographic analyses of the mtDNA suggest that recen

7 Phylogeographic analyses of these data demonstrate (i) s

8 Phylogenetic and phylogeographic analyses reveal that species abundances

9 Phylogeographic analyses revealed that Clade A had been

10 Comparative phylogeographic analyses scaled up to large geographic r

11 Phylogeographic analyses show a North American origin fo

12 Phylogeographic analyses showed that most Bhutanese stra

13 Phylogeographic analyses suggest the MERS-CoV zoonotic r

14 Recently developed phylogeographic analyses that incorporate genealogical r

15 Our results highlight the utility of phylogeographic analyses to test hypotheses about paleoe

16 Phylogeographic analyses were undertaken using plastid r

17 Phylogeographic analysis can be described as the study o

18 Phylogeographic analysis has become a major tool for inv

19 Phylogeographic analysis identified three major dispersi

20 Phylogeographic analysis indicated that GI-a diverged in

21 A phylogeographic analysis indicated that the genotype F v

22 Importantly, phylogeographic analysis indicates that EMRSA-16 spread

23 Phylogeographic analysis of five nuclear loci and morpho

24 We propose to use WGS for the phylogeographic analysis of human hantavirus infections.

25 ntain sorrel (Oxyria digyna) by conducting a phylogeographic analysis of plastid and nuclear gene DNA

26 logical patterns, we undertook a large-scale phylogeographic analysis of viruses sampled from three l

27 A key component in phylogeographic analysis of zoonotic viruses involves id

28 Finally, phylogeographic analysis revealed that hospitals have be

29 viral dispersal patterns, using statistical phylogeographic analysis run over bootstrap trees estima

30 A phylogeographic analysis shows that DWV is globally dist

31 nother coalescent-based method, nested clade phylogeographic analysis, is coherent and also allows th

32 of whole genome sequencing (WGS) to perform phylogeographic analysis, that allows the detection and

33 By means of next-generation sequencing and phylogeographic analysis, the epidemiology and transmiss

34 lly automated implementation of Nested Clade Phylogeographic Analysis.

35 ic structure, which is often a first step in phylogeographic analysis.

36 than a decade, and carried out a time-scaled phylogeographic analysis.

37 imens from 43 localities were determined for phylogeographic and demographic analyses.

38 d nuclear and mitochondrial DNA to infer the phylogeographic and evolutionary history of C. typus, wh

39 acific marginal seas are a primary center of phylogeographic and evolutionary research, because of th

40 Our phylogeographic and genomic characterization of MJNV sug

41 study subjects' demographic information with phylogeographic and molecular clock analyses, we demonst

42 Phylogeographic and phylogenetic analyses of the Mexican

43 e genetic data for researchers investigating phylogeographic and phylogenetic patterns of Myotis in t

44 three commonly used formats for multi-locus phylogeographic and population genetics analyses - NEXUS

45 hs have driven genetic divergence at deeper (phylogeographic) and shallower (landscape genetic) evolu

46 Our phylogeographic approach establishes that SIV is ancient

47 events, using a discrete Bayesian asymmetric phylogeographic approach of diffusion with Markov jump c

48 ross the species range in the US, and used a phylogeographic approach to determine whether recombinat

49 ation in three gene regions is examined in a phylogeographic approach to investigate the domesticatio

50 A phylogeographic approach was used and statistically sign

51 Using a phylogeographic approach, the present work investigates

52 Using this tree and the phylogeographic approach, we derived a new model for the

53 Deploying the statistical strength of phylogeographic approaches and using chromosomal locatio

54 Recent phylogeographic approaches can reconstruct the history o

55 This study demonstrates the utility of phylogeographic approaches for understanding trait diver

56 owever, owing to limitations of the standard phylogeographic approaches used in these studies, this h

57 markers, and combined population genetic and phylogeographic approaches.

58 Most of this phylogeographic architecture is cryptically embedded wit

59 s and Remote Oceania and also, given certain phylogeographic assumptions, by the timing of the first

60 nuclear and mtDNA gene pools results from a phylogeographic background and sex-specific dispersal, w

61 s resolved the classic Gulf-Atlantic coastal phylogeographic break, which was not significant in the

62 k or absent at more recent levels defined by phylogeographic breaks in California.

63 The major phylogeographic changes occurred 35 to 21 ka B.P., befor

64 conservation of genomotypes and linkage with phylogeographic characteristics and predicted the presen

65 hy played a predominant role at all levels - phylogeographic clades are broadly geographically struct

66 tchwork of continental and trans-continental phylogeographic clades.

67 allows determination of genome evolution and phylogeographic clustering and can contribute to clinica

68 The lack of phylogeographic clustering suggests that community intro

69 f, offers ideal opportunities to investigate phylogeographic colonisation scenarios.

70 Mitochondrial and Y-chromosomal phylogeographic comparisons indicate a common Near Easte

71 nt HTLV-II/STLV-II phylogeny exhibits little phylogeographic concordance and indicates low levels of

72 The progression rule is characterized by a phylogeographic concordance between island age and linea

73 The late Pleistocene phylogeographic data also indicate possible colonization

74 Phylogeographic data capture this initial stage of diver

75 We compared existing and new phylogeographic data sets (chloroplast DNA) from 14 wood

76 concordance or discordance of phenotypic and phylogeographic differentiation?

77 Based on the phylogeographic distribution of length variants in the e

78 er latitude species had, on average, greater phylogeographic diversity than higher latitude species a

79 significant insights into the epidemiology, phylogeographic diversity, and dynamic circulation and e

80 In this paper, we present phylogeographic, Ecological Niche Modeling, and morphome

81 This study provides phylogeographic evidence of multiple domestications of t

82 ated to over 1.8 million years ago (MYA) but phylogeographic evidence points to an even older age of

83 ld explain the apparent contrast between the phylogeographic features of maternal and paternal lineag

84 A Bayesian phylogeographic generalized linear model approach was us

85 generated from both STR and SNP data, though phylogeographic grouping of breeds derived completely or

86 eding colonies clustered into three distinct phylogeographic groupings: Norway-Scotland, Wales-Englan

87 A phylogenetic analysis of mtDNA recovers 5 phylogeographic groups arranged latitudinally along the

88 Although the hypothesis that the 3 phylogeographic groups distributed across California eac

89 The 2 southern phylogeographic groups exhibit concordance between genet

90 go, including the "Temperate" and "Tropical" phylogeographic groups that dominate most samples worldw

91 nicity island and assignment of H. pylori to phylogeographic groups were performed to test for correl

92 ucturing of the maternal gene pool into four phylogeographic groups.

93 e in-browser animations of biogeographic and phylogeographic histories from annotated phylogenetic in

94 o be highly dynamic according to the various phylogeographic histories of component species.

95 were sequenced to estimate the two species' phylogeographic histories, and for comparison to the mtD

96 these methods to infer human demographic and phylogeographic history are reviewed.

97 The phylogeographic history of the Brazilian HIV-1 subtype C

98 examine the population genetic structure and phylogeographic history of the cosmopolitan bluefish (Po

99 genetic mechanisms behind this process, the phylogeographic history of the species (inferred from ne

100 erarchy on a temporal and spatial scale, and phylogeographic history should be taken into account whe

101 estimated a suite of metrics characterizing phylogeographic history.

102 o examine population structure and alternate phylogeographic hypotheses for the mountain hare, that i

103 f model uncertainty should be a component of phylogeographic hypothesis tests.

104 given system is a key step in the process of phylogeographic inference and is at least as important a

105 e in favor of using an objective approach to phylogeographic inference that proceeds by calculating t

106 Phylogeographic inference, however, can be particularly

107 Phylogeographic inferences about gene flow are strengthe

108 influence of natural selection, many of the phylogeographic inferences derived from mtDNA were robus

109 different levels of data filtering influence phylogeographic inferences.

110 kely to produce values that lead to spurious phylogeographic inferences.

111 c analyses of msp4 sequences did not provide phylogeographic information but did differentiate strain

112 Against expectations, these molecular phylogeographic lineages (representing geological histor

113 They also indicate that the two phylogeographic lineages are at an incipient stage of th

114 ondary contact and hybridization between two phylogeographic lineages in the East China Sea.

115 rmore, the adult standard lengths of the two phylogeographic lineages vary geographically in a manner

116 Phylogeographic methods have been used to characterize p

117 merging pathogen is estimated using standard phylogeographic methods.

118 We predict that phylogeographic mitogenomics will become an important to

119 The results of the SDM, continuous-diffusion phylogeographic model, extensive Bayesian skyline plot a

120 We used the continuous-diffusion phylogeographic model, extensive Bayesian skyline plot s

121 In addition, we show that phylogeographic models incorporating information on the

122 We found strong phylogeographic monophyly and large genetic distances be

123 A likely factor is the phylogeographic movement of peoples from the Old World b

124 linical isolates can discriminate strains by phylogeographic origin and that these profiles are assoc

125 hic gastritis and gastric cancer suggest the phylogeographic origin of an infection with a more virul

126 sis that bacterial factors determined by the phylogeographic origin of H. pylori strains may promote

127 ancer risk segregated strains based on their phylogeographic origin.

128 ential avenue toward a synthetic comparative phylogeographic paradigm that includes addressing some i

129 Here, we examine phylogeographic partitions in the sea against a backdrop

130 ological dynamics and the different types of phylogeographic pattern exhibited by human viruses.

131 The described phylogeographic pattern is considered in relation to lar

132 The phylogeographic pattern of diasporas from several single

133 istory of plants in HHM, we investigated the phylogeographic pattern of Oxyria sinensis, a perennial

134 rtant role of a past geological event in the phylogeographic pattern of this species.

135 with its human host, resulting in a distinct phylogeographic pattern that can be used to reconstruct

136 erentiation (G(ST(RFLP))=0.700-0.782) with a phylogeographic pattern that indicated extensive histori

137 not have a strong archaeobotanical record or phylogeographic pattern, it is difficult to precisely id

138 rthermore, prophage genomes present a robust phylogeographic pattern, revealing four distinct cluster

139 esent data on Wolbachia infection status and phylogeographic patterning for a widely distributed inse

140 For crop plants, phylogeographic patterns also indicate how seed has been

141 There is great potential for common phylogeographic patterns among remote archipelagos that

142 We find support for idiosyncratic phylogeographic patterns between these wasps, involving

143 twentieth century, and discerning fine-scale phylogeographic patterns is thus particularly challengin

144 ithin North America, indicating that current phylogeographic patterns may provide misleading data for

145 ating that this species more closely maps to phylogeographic patterns observed in arctic-boreal rathe

146 Phylogeographic patterns of some extant plant and verteb

147 We compared phylogeographic patterns of these three Ophiothrix speci

148 We compared phylogeographic patterns of three EBLF constituents in C

149 Phylogeographic patterns suggest that northern South Asi

150 the three species displayed three different phylogeographic patterns that conform to either an in si

151 promoted a tendency to attribute discordant phylogeographic patterns to the idiosyncracies of histor

152 mitochondrial control region, and few clear phylogeographic patterns worldwide.

153 HTLV-I/STLV-I are united through distinct phylogeographic patterns, infection of 20 primate specie

154 tial biases in the data and elucidate subtle phylogeographic patterns.

155 different historical scenarios as causes of phylogeographic patterns.

156 oss Africa, from both population genetic and phylogeographic perspectives.

157 useful role in various phyloinformatics and phylogeographic pipelines.

158 was no significant correlation of H. pylori phylogeographic population or carriage of the cagPAI wit

159 We use analyses of phylogeographic population structure across a suite of 1

160 Genetic diversity and phylogeographic population structure in the gammarid amp

161 In this study, we examined the phylogeographic population structure of B. burgdorferi t

162 Finally, the overall phylogeographic profile reveals several clinal patterns

163 logical data, phylogenies reveal three large phylogeographic regions.

164 We characterized the phylogeographic relationships among 83 isolates of fox r

165 es at regional or local scales, or described phylogeographic relationships within a single type.

166 Phylogeographic research investigates biodiversity at th

167 ns are particularly informative subjects for phylogeographic research on account of their global dist

168 some haplotypes, which provide the necessary phylogeographic resolution, in 1140 males from the Iberi

169 s-sectional study of national and global CPV phylogeographic segregation reveals a substantially more

170 xtension of the PD optimization problem to a phylogeographic setting is NP-hard, although a special c

171 We observe little phylogeographic signal in the modern population, indicat

172 ntroductions of USA300 and reconstructed the phylogeographic spread of isolates across neighborhoods.

173 abitats explained little of the variation in phylogeographic structure across the latitudinal gradien

174 We performed statistical tests of phylogeographic structure and applied a recently develop

175 s from five nuclear loci were used to assess phylogeographic structure and nucleotide divergence betw

176 Through tests of phylogeographic structure and spatial linear regression

177 ow, questions have been raised regarding its phylogeographic structure and taxonomic status.

178 type 6 in Asia, characterized by substantial phylogeographic structure and two distinct phases of epi

179 Local transmission was evident in clear phylogeographic structure between the samples from the t

180 ater sequence divergence and revealed strong phylogeographic structure corresponding to major biogeog

181 We examined the phylogeographic structure of 52 populations of the commo

182 To analyze the genetic relatedness and phylogeographic structure of Anopheles darlingi from 19

183 We also investigate the phylogeographic structure of P. faunus and test whether

184 We quantified the European phylogeographic structure of the marine flagellate Oxyrr

185 solution to which lies in understanding the phylogeographic structure of this morphologically simple

186 A strong phylogeographic structure was found, with two reciprocal

187 Phylogeographic structure was not observed within Scandi

188 Significant phylogeographic structure was recovered with haplotype c

189 us Bolitoglossa in Costa Rica reveals strong phylogeographic structure within a single species, Bolit

190 nterglacial (LIG) have likely contributed to phylogeographic structure, and the population genetic st

191 luating hypotheses or may predict discordant phylogeographic structure.

192 orthern and southern populations to evaluate phylogeographic structure.

193 s, we first provide a snapshot of multilocus phylogeographic studies across the Carpentarian Barrier,

194 Contrary to a chorus of previous phylogeographic studies and the results of species distr

195 These findings contrast with phylogeographic studies based on mitochondrial DNA (mtDN

196 etection of hybrids in the growing number of phylogeographic studies based on multiple gene markers.

197 In the tropical Indo-Pacific, most phylogeographic studies have focused on the shallow-wate

198 Phylogeographic studies have found evidence of high leve

199 cing thousands of loci for many individuals, phylogeographic studies have increased inferential power

200 Phylogeographic studies have sought to explain the genet

201 Although phylogeographic studies in animals have provided many ne

202 Phylogeographic studies of plants have documented the re

203 Additionally, we reassess previous phylogeographic studies within the group.

204 s of the autosomal genome become amenable to phylogeographic studies.

205 genetic structure have been underexplored in phylogeographic studies.

206 ses of a single-copy nuclear gene in a plant phylogeographic study and yield several important insigh

207 investigated this crop's domestication in a phylogeographic study based on the single-copy nuclear g

208 These results are consistent with an earlier phylogeographic study suggesting that weedy sunflowers h

209 only a small number (two to six) of salient phylogeographic subdivisions (those that stand out again

210 A phylogeographic survey of 227 leprosy biopsies by differ

211 sil records, species distribution models and phylogeographic surveys - in order to characterize the c

212 We applied a variety of statistical phylogeographic techniques to a plethora of viral genome

213 nd highlight the importance of assessing the phylogeographic value of populations for conservation.

214 it is important to quantify and compare the phylogeographic variation in both the host and the paras

215 pattern of divergence and demonstrated that phylogeographic variation occurred through emergence of