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1 ctive unless it heterodimerizes with another phytochrome.
2 ed ratio of the light, which is perceived by phytochrome.
3 ochromobilin, a cofactor of photoconvertible phytochromes.
4 l NIR FPs and NIR luciferases from bacterial phytochromes.
5 atio provides a competition signal sensed by phytochromes.
6 n the red/far-red light sensed by land plant phytochromes.
7 t for the photochromicity of all multidomain phytochromes.
8 he light induction of PHOTOPERIOD1 (PPD1) by phytochromes.
9 ar to those seen in other streptophyte algal phytochromes.
10 functional characterization of Avena sativa phytochrome A (AsphyA) as a potential protein kinase.
13 that CKI1 expression is under the control of phytochrome A (phyA), functioning as a dual (both positi
15 light signaling by photoreceptors other than phytochrome A and additively increases ABA insensitivity
18 the positive clones encodes a member of the Phytochrome A Signal Transduction1 subfamily of GRAS (fo
19 TYL IN FAR RED1/SLENDER IN CANOPY SHADE1 and phytochrome A, which function largely independently to n
26 ic measurements reveal diurnal regulation of phytochrome and bilin chromophore biosynthetic genes in
27 light being most effective, indicating that phytochrome and blue light signaling control AR system a
28 oreceptor--neochrome--that fuses red-sensing phytochrome and blue-sensing phototropin modules into a
31 We found that loss-of-function mutations in PHYTOCHROME AND FLOWERING TIME1 (PFT1)/MED25 increase pr
33 that genetic linkage map regions containing phytochrome and HY5-specific markers were associated wit
34 far red light was regulated by SIG5 through phytochrome and photosynthetic signals; and the circadia
35 lgal and land plant neochromes, a chimera of phytochrome and phototropin, appear to share a common or
38 ion of direct protein-protein interaction of phytochromes and cryptochromes and common signaling mole
39 dian system via both photoreceptors, such as phytochromes and cryptochromes, and sugar production by
40 y multiple sensory photoreceptors, including phytochromes and cryptochromes, which absorb different w
41 overview of optogenetic tools developed from phytochromes and describe their use in light-controlled
43 programs to rapidly introgress G. barbadense phytochromes and/or HY5 gene (s) into G. hirsutum cotton
44 in rhodopsins, photoactive yellow proteins, phytochromes, and some other photoresponsive proteins wh
45 ng1 mutants confirms that ein2 enhances both phytochrome- and cryptochrome-dependent responses in a L
59 th the red and far-red light photoreceptors, phytochromes, are called PHYTOCHROME INTERACTING FACTORS
61 ght-oxygen-voltage-sensing (LOV) domains and phytochromes, as well as their properties and applicatio
63 ent proteins (FPs) engineered from bacterial phytochromes attract attention as probes for in vivo ima
64 ion of linear tetrapyrrole chromophores make phytochromes attractive molecular templates for the deve
65 is inhibited in sorghum genotypes that lack phytochrome B (58M, phyB-1) until after floral initiatio
66 ed and validated signaling-active alleles of phytochrome B (eYHB) as plant-derived selection marker g
67 RACK/BROAD (LRB) E3 ubiquitin ligases target phytochrome B (phyB) and PIF3 primarily under high-light
73 tors [3-5], with the red-light photoreceptor phytochrome B (phyB) having a dominant role in white lig
75 hat light-activated phytochrome A (phyA) and phytochrome B (phyB) interact with SPA1 and other SPA pr
77 ow that the C-terminal module of Arabidopsis phytochrome B (PHYB) is sufficient to mediate the degrad
83 tion of low red to far-red ratios (R:FRs) by phytochrome B (phyB), which leads to the direct activati
86 ht and temperature by dual receptors such as phytochrome B and phototropin leads to immediate signall
90 et al. (2016a) show that red-light-activated phytochrome B interacts with transcriptional regulators
91 the red light sensing network that modulates phytochrome B signaling input into the circadian system.
92 response is controlled by the photoreceptor, phytochrome B, through the deactivation and proteolytic
94 introduce a constitutively active version of phytochrome B-Y276H (YHB) into both wild-type and phytoc
95 he red/far red light absorbing photoreceptor phytochrome-B (phyB) cycles between the biologically ina
96 (BR) signaling converges with SUPPRESSOR OF PHYTOCHROME B4-#3 (SOB3) to influence both the transcrip
98 s 2-fold and 1.4-fold smaller than bacterial phytochrome-based NIR FPs and GFP-like proteins, respect
99 le as chromophore, which switch in canonical phytochromes between red (Pr) and far red (Pfr) light-ab
101 light-induced binding between the bacterial phytochrome BphP1 and its natural partner PpsR2 from Rho
102 proteins (NIR FPs) engineered from bacterial phytochromes (BphPs) are of great interest for in vivo i
104 FPs) were recently engineered from bacterial phytochromes but were not systematically compared in neu
106 he temperate grass, Brachypodium distachyon, PHYTOCHROME C (PHYC), is necessary for photoperiodic flo
107 B. distachyon colocalize with VERNALIZATION1/PHYTOCHROME C and VERNALIZATION2, loci identified as flo
112 aging microscopy analyses show that SPAs and phytochromes colocalize and interact in nuclear bodies.
113 chanism is a blueprint for understanding how phytochromes connect to the cellular signalling network.
118 e of red light-grown seedlings of the tomato phytochrome-deficient aurea mutant upon NO fumigation.
120 eristic of the D-ring photoflip in canonical phytochromes, denaturation experiments showed conclusive
123 molecular oxygen for chromophore maturation, phytochrome-derived IFPs incorporate biliverdin (BV) as
124 In nature, this strategy may be activated in phytochrome-disabling, vegetation-dense habitats to enha
126 druple mutant in the dark and increased in a phytochrome double mutant in the light, indicating that
127 the Deinococcus radiodurans proteobacterial phytochrome (DrBphP) is hypersensitive to X-ray photons
129 ne dinucleotide) domains, cryptochromes, and phytochromes, enabling control of versatile cellular pro
133 mote photomorphogenesis, light activates the phytochrome family of sensory photoreceptors, which inhi
135 versibly switchable nonfluorescent bacterial phytochrome for use in multiscale photoacoustic imaging,
137 were studied with droplets of the bacterial phytochrome from Deinococcus radiodurans (DrBphP), which
139 dentify multiple structural transitions in a phytochrome from Synechocystis sp. PCC6803 (Cph1) by mea
140 model cyanobacterial photoreceptors and into phytochrome from the early-diverging streptophyte alga M
141 xamined the photosensory properties of seven phytochromes from diverse algae: four prasinophyte (gree
144 es and establish the basis for understanding phytochrome functional evolution in land plants and thei
146 detailed the genome mapping of three cotton phytochrome genes with newly developed CAPS and dCAPS ma
147 Cph2 from Synechocystis sp., a noncanonical phytochrome, harbors besides a cyanobacteriochrome domai
148 monstrates that extensive spectral tuning of phytochromes has evolved in phylogenetically distinct li
151 , prasinophyte, cryptophyte, and glaucophyte phytochromes implying an origin in the eukaryotic ancest
152 balance between synthesis and photoactivated-phytochrome-imposed degradation, with maximum levels acc
153 ass, our data point to an important role for phytochrome in regulating these fundamental components o
154 nstructions robustly support the presence of phytochrome in the common progenitor of green algae and
156 xpression of up to ~20-fold in the remaining phytochromes in somatically regenerated PHYA1 RNAi cotto
158 shijima et al. (2017) demonstrate a role for phytochromes in widespread regulation of alternative pro
160 ng that PIFs elevate GA in the dark and that phytochrome inhibition of PIFs could lower GA in the lig
162 transduction to the circadian clock are the PHYTOCHROME INTERACTING FACTOR (PIF) family of transcrip
163 In hypocotyls, GA levels were reduced in a phytochrome interacting factor (pif) quadruple mutant in
164 n large part by controlling the abundance of PHYTOCHROME INTERACTING FACTOR (PIF) transcription facto
165 anscriptome and the auxin levels of cop1 and phytochrome interacting factor 1 (pif1) pif3 pif4 pif5 (
166 twork analysis revealed the co-expression of PHYTOCHROME INTERACTING FACTOR 1 (PIF1) with those genes
167 Several transcription factors including a PHYTOCHROME INTERACTING FACTOR 3-like gene (PIF3) were i
169 omorphogenic and thermomorphogenic regulator Phytochrome Interacting Factor 4 (PIF4) on hypocotyl elo
170 s the transcriptional activation activity of PHYTOCHROME INTERACTING FACTOR 4 (PIF4), a key transcrip
172 ers degradation of the transcription factors PHYTOCHROME INTERACTING FACTOR 4 and PHYTOCHROME INTERAC
173 nd repressing the expression of GIGANTEA and PHYTOCHROME INTERACTING FACTOR 4 as well as several of t
174 and these changes have detectable effects on phytochrome interacting factor 4 expression and growth.
176 factors PHYTOCHROME INTERACTING FACTOR 4 and PHYTOCHROME INTERACTING FACTOR 5 and stabilizes growth-r
178 of downstream regulatory proteins, including PHYTOCHROME INTERACTING FACTOR transcription factors, an
180 he phyA-regulated transcription factors (TF) PHYTOCHROME INTERACTING FACTOR3 and CIRCADIAN CLOCK ASSO
181 , the combination of circadian expression of PHYTOCHROME INTERACTING FACTOR4 (PIF4) and PIF5 and thei
182 rve mutants are due to the misregulation of PHYTOCHROME INTERACTING FACTOR4 (PIF4) and PIF5 expressi
192 gene transcription is directly repressed by PHYTOCHROME-INTERACTING FACTOR (PIF)-class bHLH transcri
193 eased expression of the transcription factor PHYTOCHROME-INTERACTING FACTOR (PIF4) may contribute to
195 ix-loop-helix transcription factors, such as PHYTOCHROME-INTERACTING FACTOR 3 (PIF3), to regulate gen
196 s, mediated by the bHLH transcription factor PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) [6-8], and enhan
197 CKRC2/YUC8 can be induced by CK and that the phytochrome-interacting factor 4 (PIF4) is required for
198 stream of the BRASSINAZOLE-RESISTANT1 (BZR1)-PHYTOCHROME-INTERACTING FACTOR 4 (PIF4)-DELLA module.
199 namic repression-activation module formed by PHYTOCHROME-INTERACTING FACTOR1 (PIF1) and LONG HYPOCOTY
200 ibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-
207 egative regulators of GA signalling, inhibit phytochrome-interacting factors 3 and 4 (PIF3 and PIF4)
208 ontrast, the negatively acting factors (e.g. phytochrome-interacting factors or PIFs) are degraded in
210 ight signals by mediating the degradation of phytochrome-interacting transcription factors (PIFs) thr
212 on we have engineered R. palustris bacterial phytochrome into a single-domain NIR FP of 19.6 kDa, ter
213 s for Katushka2S and near-infrared bacterial phytochrome, iRFP720 were comparable in their optimal ch
214 most sequenced prasinophyte algal genomes, a phytochrome is found in Micromonas pusilla, a widely dis
215 ion, indicating that nuclear localization of phytochrome is necessary for its clock regulatory activi
216 four distinct kinases (PPKs, CK2, BIN2, and phytochrome itself) and four families of ubiquitin ligas
217 ults suggest a positive relationship between phytochrome kinase activity and photoresponses in plants
218 properties and functional roles of putative phytochrome kinase activity in plant light signalling ar
231 Furthermore, the already growth-retarded phytochrome mutants are less responsive to growth-inhibi
233 re mediated by an intricate cross talk among phytochromes, nitric oxide (NO), ethylene, and auxins.
234 chrome B-Y276H (YHB) into both wild-type and phytochrome null backgrounds of Arabidopsis (Arabidopsis
236 ion of cyanobacterial phytochrome2 (Cph2), a phytochrome of the cyanobacterial model system Synechocy
237 this study, we analyzed the influence of the phytochromes on phototropism in green (de-etiolated) Ara
238 nd genomic data we show that canonical plant phytochromes originated in a common ancestor of streptop
242 he transcript accumulation of genes encoding phytochromes, photomorphogenesis-repressor factors, and
246 After light-induced nuclear translocation, phytochrome photoreceptors interact with and induce rapi
248 ort that, in response to light activation of phytochrome photoreceptors, EIN3-BINDING F BOX PROTEINs
251 output signal converges immediately with the phytochrome photosensory pathway to coregulate directly
252 nvironment is not homogeneous, the uncovered phytochrome-phototropin co-action is important for plant
253 ndings reveal fundamental differences in the phytochrome-phototropism crosstalk in etiolated versus g
254 rylation and light perception, including the phytochrome (Phy) A and phototropin photoreceptors.
255 ant photomorphogenesis are controlled by the phytochrome (Phy) family of bilin-containing photorecept
259 Upon light-induced nuclear translocation, phytochrome (phy) sensory photoreceptors interact with,
261 s enhanced by the red/far-red (R/FR)-sensing phytochromes (phy) with a predominant function of phyA.
263 s mediated by the red/far-red photoreceptors phytochromes (PHYs) and is inhibited by repressors of PH
269 that light-mediated nuclear translocation of phytochrome predates the emergence of land plants and li
271 describe a major thermosensory role for the phytochromes (red light receptors) during the night.
272 of these genes precedes both light-mediated phytochrome redistribution from the cytoplasm to the nuc
274 ion factors in darkness, but light-activated phytochrome reverses this activity, thereby inducing exp
275 establish that prasinophyte and streptophyte phytochromes share core light-input and signaling-output
277 factor 45 (SPF45) named splicing factor for phytochrome signaling (SFPS), which directly interacts w
280 cent discoveries with a focus on the central phytochrome signaling mechanisms that have a profound im
281 nucleus as a transcriptional coactivator in phytochrome signaling to regulate a distinct set of ligh
286 Cyanobacteriochromes are members of the phytochrome superfamily of photoreceptors and are of cen
288 cyanobacteriochromes (CBCRs), members of the phytochrome superfamily of photoreceptors that exhibit a
290 Light-induced heterodimerization using the phytochrome system has previously been used as a powerfu
292 e factors are also known to be controlled by phytochromes, the red/far-red photoreceptors; however, t
293 nderlying the co-action of cryptochromes and phytochromes to coordinate plant growth and development
294 rtional to temperature in the dark, enabling phytochromes to function as thermal timers that integrat
297 onal analyses of the Deinococcus radiodurans phytochrome, we demonstrate that two dimerization interf
298 and Selaginella apparently possess a single phytochrome, whereas independent gene duplications occur
299 Ps, termed miRFPs, engineered from bacterial phytochrome, which can be used as easily as GFP-like FPs
300 module of Deinococcus radiodurans bacterial phytochrome with the effector module of Homo sapiens pho
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