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1 sed with expression of the pCMVbeta reporter plasmid.
2 trol microbe which solely harbored the pNZ44 plasmid.
3 to the chromosome and bla(VIM-1) to a 58-kb plasmid.
4 lated by GODZ using a GODZ dominant-negative plasmid.
5 ticles upon transfection with a GFP replicon plasmid.
6 une system that protects against viruses and plasmids.
7 formation within negatively supercoiled DNA plasmids.
8 ainst invasive nucleic acids from phages and plasmids.
9 host that is at least as high as the cost of plasmids.
10 oups and mixed populations carrying multiple plasmids.
11 rmation of non-covalent adducts with natural plasmids.
12 romosomal DNA repair and replication of some plasmids.
13 eukaryotic DNA viruses and self-replicating plasmids.
14 of Gram-negative microbes carrying different plasmids.
15 mors after hydrodynamic gene delivery of AKT plasmids.
16 for bacteria and archaea against viruses and plasmids.
17 ircular chromosomes and two smaller putative plasmids.
18 hogenesis are located on two large virulence plasmids.
19 ly segregate chromosomes and low copy-number plasmids.
21 atibility types, the IncI2, IncX4 and IncHI2 plasmids accounted for more than 90% of MGEs carrying th
25 e isolates were observed to carry IncX4 type plasmid, among which 13 were identified to carry mcr-1 g
27 c killing of the strain harboring the pIP501 plasmid and also proved to be cross-reactive against oth
30 phi in cell culture, and stably maintain the plasmid and GFPuv expression under antibiotic treatment
32 CRISPR arrays contain spacers homologous to plasmid and temperate phage sequences and, in some cases
33 tra- and interpatient diversification at the plasmid and transposon level was observed, significantly
34 We describe novel CRISPR/Cas9 transfection plasmids and approaches for the speedy, stable and marke
35 in cells transfected by pEF-GFP and pUB-GFP plasmids and for at least 5 days post-transfection for c
36 A fragments from invading bacteriophages and plasmids and integrate them as spacers into bacterial CR
38 enome binning, we show that our method links plasmids and other mobile genetic elements to their host
40 isms and approximately 600 novel viruses and plasmids and representing common experimental setups.
41 e transcript, reducing the size of mutagenic plasmids and simultaneously simplifying their design.
42 histidine relaxases among small promiscuous plasmids and their preference toward Gram-positive bacte
43 rionaceae chromosome arose from an ancestral plasmid, and that RctB may have evolved additional regul
45 mplex of Shigella flexneri contains invasion plasmid antigen D (IpaD), which initially regulates secr
49 global human health threat, and conjugative plasmids are important drivers of the rapid spread of re
50 As in other transposome systems, no helper plasmids are required since transposases are not express
51 ight against foreign DNA, such as phages and plasmids, as well as a revolutionary gene editing tool.
53 en, Campylobacter jejuni, can carry multiple plasmids associated with antibiotic resistance or virule
58 tudy, we co-transfected AAV2 and AAV8 helper plasmids at different ratios (3:1, 1:1 and 1:3) to assem
59 However, an additional nick in the donor plasmid backbone markedly improved the gene-editing effi
66 Biosynthesis of OXT-A has been linked to a plasmid-borne Bacillus megaterium gene cluster that cont
67 was revealed in Escherichia coli expressing plasmid-borne NMB0419 and showing significantly increase
68 n experiments, the DeltasfaA mutant carrying plasmid-borne sfaA restored the growth fitness in absces
69 fend against invading phages and conjugative plasmids by introducing site-specific double-stranded br
70 selfish genetic elements such as viruses and plasmids, by specific degradation of invader DNA or RNA.
72 stid flagellate Parabodo caudatus with three plasmids carrying a fluorescence reporter gene (pEF-GFP
76 lls from immune donors were transfected with plasmids coding for the most abundant proteins from the
77 ing Cas9/crRNA ribonuclear protein and donor plasmid coelectroporation, followed by fluorescence-base
78 utive promoter (2x CaMV 35S) was used in the plasmid construction, but seven transgenic lines were ob
81 iferase activity in cells transfected with a plasmid containing FXI-3'UTR.These results should open t
83 its medium and then uses them to replicate a plasmid containing the unnatural base pair dNaM-dTPT3.
87 A cycling in Escherichia coli in the form of plasmid copy number oscillations via a modular design th
89 reducing construct size versus conventional plasmids) deployed with magnetofection achieve the highe
91 tified Fbs1 variants through mutagenesis and plasmid display selection, which possess higher affinity
92 tated genes in the core genome); substantial plasmid diversity (>/=9 replicon types); and substantial
93 dermal administration of nucleic acids, both plasmid DNA (pDNA) and siRNA, to treat localised disease
95 caused restriction of incoming bacteriophage/plasmid DNA and endogenous chromosomal DNA within Escher
96 Heterologous prime-boost immunization with plasmid DNA and viral vector vaccines is an emerging app
97 with spiky surfaces demonstrate the highest plasmid DNA binding capability and transfection efficacy
102 , we administered intracranial injections of plasmid DNA encoding IL-10 (pDNA-IL-10) into the NAc of
103 e prepared via freeze drying and loaded with plasmid DNA encoding perlecan domain I and VEGF189 and a
105 s suggest that chitosan scaffolds containing plasmid DNA encoding VEGF189 and perlecan domain I have
106 uine IgG obtained from horses immunized with plasmid DNA followed by boosting with Kunjin replicon vi
107 ecifically evaluated the advantages of using plasmid DNA for sequencing and the value of supplementin
109 improves microparticle-based transfection of plasmid DNA lipoplexes in several primary human cell typ
110 antly enhanced survival compared to the same plasmid DNA loaded in DNA-CN in two aggressive orthotopi
112 Finally, DNA-BPN loaded with anti-cancer plasmid DNA provided significantly enhanced survival com
114 1 muL droplet of whole blood, and we amplify plasmid DNA spiked into whole blood droplets to represen
115 Furthermore, the efficient amplification of plasmid DNA spiked into whole blood proves that the larg
116 ionalized fluorescent probes, antibodies, or plasmid DNA to living cells requires overcoming the plas
119 te nanotopography of silica nanoparticles as plasmid DNA vectors has significant impact on the transf
120 or CMV, or transient transfection with naked plasmid DNA, HIRA re-localizes to PML bodies, sites of c
121 is co-transfected with transposon-containing plasmid DNA, it penetrates prokaryotic or eukaryotic cel
126 by twofold to fivefold relative to circular plasmid donors at one genomic locus in 293 T cells and t
127 which is comparable to therapy results with plasmid-driven L. lactis Initial blood glucose concentra
129 The genes encoding CS30 were located on a plasmid (E873p3) together with the genes encoding LT and
130 he insert between three high-copy expression plasmids enables the bulk purification of the aminoacyl-
132 progress on the pathogenic functions of the plasmid-encoded open reading frames, which may motivate
133 culation, a C. muridarum strain deficient in plasmid-encoded pGP3 or pGP4 but not pGP5, pGP7, or pGP8
134 mechanism that requires a multi-functional, plasmid-encoded replication protein to initiate replicat
136 e plasmid of a transposon from a co-residing plasmid encoding a putative toxin-antitoxin system; iii)
139 te in mice by hydrodynamic transfection of a plasmid encoding for tissue-type plasminogen activator (
141 e were given intraperitoneal injections of a plasmid encoding LNA-anti-uc.173, to knock down endogeno
144 icity on replication, we engineered proviral plasmids encoding diverse RTs within the backbone of HIV
145 lar genetic contexts were found in different plasmids, even the E. coli chromosome, implying the acqu
147 enomics showed that the mcr-1-carrying IncX4 plasmids exhibit remarkable similarity in the backbone,
148 patient was corrected by delivering a CRISPR plasmid expressing Cas9/gRNA and a single-stranded oligo
149 h a Zaire ebolavirus glycoprotein expression plasmid followed by infection with a vesicular stomatiti
150 we found that a large conjugative resistance plasmid follows the same evolutionary trajectories as it
151 ave engineered specific fluorescent reporter plasmids for quantitative measurements of 8-oxoguanine D
152 corporates DNA fragments (spacers) from both plasmid (foreign) and host genome (self) sequences into
155 e in vivo but not in vitro phenotypes of the plasmid-free organisms, suggesting that pGP3 is a key in
158 ts at approximately 80% fidelity and a 31 kb plasmid from five fragments at approximately 50% fidelit
159 east Saccharomyces cerevisiae, on a low-copy plasmid from two identical P TDH3 promoters containing a
161 validated the results observed with the DNA plasmid, further supporting that PPTSP44 constitutes a p
162 s and the gammaherpesviruses, maintain their plasmid genomes by tethering them to cellular chromosome
167 own to increase plasmid persistence in other plasmid-host pairs, our work points towards common mecha
168 P8) in a high-expression plasmid or in a CEN plasmid in the presence of recessive mutations in genes
171 lular localization of sRNAs transcribed from plasmids in Escherichia coli using RNA fluorescent in-si
173 detection of the GM strain and its putative plasmids in food and feed products have been developed.
179 systems provide protection against viral and plasmid infection by capturing short DNA sequences from
183 mRNAs by transfection of Luciferase reporter plasmids into Huh7, BNL-1ME, and HEK293 cultured cell li
187 wth, and that the acquisition of a virulence plasmid is sufficient to transition beneficial symbionts
189 from a library of transfected, promoter-less plasmids is recombined into the landing pad in each cell
191 peg-344 is present on the hvKP1 virulence plasmid, is broadly prevalent among hvKP strains, and ha
193 mbining conjugation inhibition and promoting plasmid loss would be an effective strategy to limit con
195 equencing revealed that the strain carried a plasmid-mediated CTX-M-15 ESBL gene and did not belong t
197 faeces were tested for Escherichia coli with plasmid-mediated quinolone resistance (PMQR), extended-s
199 Recently, the mcr-1 gene was identified as a plasmid-mediated resistance mechanism in human and anima
201 rough small interfering RNA knockdown or MCU plasmid-mediated up-regulation, as well as through modul
202 echnique capable of delivery of multiple DNA plasmids, messenger RNAs, and recombinant proteins is de
204 tion are the most commonly observed modes of plasmid motility in vivo, we suggest that the operation
207 rfA1); ii) the acquisition by the resistance plasmid of a transposon from a co-residing plasmid encod
208 allotopic ATP8 (nATP8) in a high-expression plasmid or in a CEN plasmid in the presence of recessive
210 nsfected fusion and hemagglutinin expression plasmids or with syncytium-based assays in Vero, Vero-SL
211 ng exopolyphosphatase PPX from a recombinant plasmid, or by the introduction of deletion alleles in p
212 Yet, replication from an R-loop-initiating plasmid origin kills the double rnhAB mutant, revealing
214 y for acquiring and disseminating resistance plasmids, particularly variants of the K. pneumoniae car
218 reafter) device was used to deliver reporter plasmids (pCMVbeta and pEGFP-N1) into viable excised hum
220 ons individually have been shown to increase plasmid persistence in other plasmid-host pairs, our wor
221 terns of adaptive evolution led to increased plasmid persistence: i) mutations in the replication pro
223 roduction system, we used an HBoV1 packaging plasmid, pHBoV1NSCap, that harbors HBoV1 nonstructural p
225 ed with Klebsiella pneumoniae, a predominant plasmid (pKpQIL), and a specific transposable element (T
226 the MOBV relaxase MobM from the promiscuous plasmid pMV158 in complex with several origin of transfe
227 rovide validation by DNA amplification of 77 plasmids predicted by Recycler from the different sequen
228 as found on high copy number, small Col-like plasmids, previously associated with horizontal transmis
233 ecycler greatly increases the number of true plasmids recovered relative to other approaches while re
234 were preferentially acquired from genome or plasmid regions corresponding to active transposons, CRI
239 host cell reactivation assay, we show that a plasmid reporter bearing a site-specific 3,N4-ethenocyto
240 Parallel RNA-Seq expression analysis of the plasmid reporter identifies novel transcriptional mutage
242 against turnaround time, full annotation of plasmid resistance gene content could be obtained in und
243 ion, along with the distribution patterns of plasmids, reveals the impact of horizontal gene transfer
244 h Linear Array (LA) genotyping results for 9 plasmid samples and fully or partially concordant for 9
245 ctates the tempo of ParF assembly cycles and plasmid segregation events by stimulating ParF adenosine
250 t of segregation; the symmetric tethering of plasmid sisters to sister chromatids embodies the replic
251 of single nicks in the target gene and donor plasmid (SNGD) using Cas9D10A nickase promotes efficient
257 ansformation of R. typhi with the pRAM18dRGA plasmid that originally derives from Rickettsia amblyomm
258 previously thought, in terms of the range of plasmids that can be transferred by conjugation and the
259 quences derived from prokaryotic viruses and plasmids that determine the targets of the host's CRISPR
260 account for the length of the entire pWH1266 plasmid, the qPCR rate constants were 2-7x larger than t
261 y pGP4 and pGP5, respectively, may allow the plasmid to promote chlamydial adaptation to varied anima
262 hhiking model, random tethering of a pair of plasmids to chromosomes signifies the replication-indepe
264 ted from 100 ml E. coli cultures for the two plasmids to produce 100 bp or 1 kb ladders for 1000 gels
265 shown to select for adaptation of resistance plasmids to their new bacterial hosts, or vice versa, a
267 Whereas ParF specifies the territory for plasmid trafficking, the ParG partner protein dictates t
268 s of irradiated, Hey2 siRNA- and Hey2 vector plasmid-transfected human umbilical vein endothelial cel
269 e context of segment 7 RNPs reconstituted by plasmid transfection and in mutant virus-infected cells.
270 of BE3 confers higher specificity even than plasmid transfection of HF-BE3, while maintaining compar
272 verexpression of hsp60, achieved by in vitro plasmid transfection, was then performed to determine wh
274 or many gram-positive pathogens, conjugative plasmid transfer is an important means of spreading anti
276 at high frequencies (10(-1) to 10(-3)), and plasmid types and MCRPEC multi-locus sequence types (MLS
277 ins were analysed for antibiotic resistance, plasmid typing, and transfer analysis, and strain relate
278 systems have recently been documented using plasmid, viral, or fragmented genomic DNA; dPCR performa
280 C 319 trial, done in three centres, assessed plasmid VRC5288 (Zika virus and Japanese encephalitis vi
282 alysis of this revealed that the integration plasmid was frequently lost and that apidaecin expressio
283 in which the rate of loss of the integration plasmid was much lower after induction, and which produc
286 We previously showed that a broad-host-range plasmid was poorly maintained in Shewanella oneidensis,
292 Three representative mcr-1-positive IncX4 plasmids were selected for high-throughput sequencing.
293 PSU1 & pPSU2 pair of molecular weight marker plasmids which produce both 100 bp and 1 kb DNA ladders
296 We used recircularization of a linearized plasmid with 3-P-blocked termini, mimicking those at X-r
300 r large (1.1 Mb) synthetic yeast centromeric plasmids (YCps) to cultured cell lines at rates similar
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