ライフサイエンスコーパス: plastid genome

1 tools available for the manipulation of the plastid genome.

2 istance (aadA) transgene incorporated in the plastid genome.

3 t via the Gibbs sampler, and apply it to the plastid genome.

4 eric ACCase, which is encoded in part by the plastid genome.

5 nd Euglena viridis, and in the Astasia longa plastid genome.

6 for the elimination of marker genes from the plastid genome.

7 cating a native gene from the nucleus to the plastid genome.

8 sion element and its cognate sequence in the plastid genome.

9 e removed by targeted gene deletion from the plastid genome.

10 arget sites defined by direct repeats in the plastid genome.

11 tability is consistent with mutations in the plastid genome.

12 of rpoB (encoding the beta-subunit) from the plastid genome.

13 he reduction in size and gene content of the plastid genome.

14 ut it is still unknown whether they harbor a plastid genome.

15 formation of the tobacco (Nicotiana tabacum) plastid genome.

16 a primary plastid-bearing lineage without a plastid genome.

17 h less than 100 are typically encoded in the plastid genome.

18 the synthesis of polypeptides encoded by the plastid genome.

19 cross all nuclear chromosomes as well as the plastid genome.

20 ed with the subunits that are encoded by the plastid genome.

21 nserted into the tobacco (Nicotiana tabacum) plastid genome.

22 the introduction of the bar(au) gene in the plastid genome.

23 ations and for in planta manipulation of the plastid genome.

24 th the evolutionary history indicated by the plastid genome.

25 ic region of the tobacco (Nicotiana tabacum) plastid genome.

26 cyanobacteria, but 10-fold larger than most plastid genomes.

27 s expression and coordination of nuclear and plastid genomes.

28 subunits chlL, chlN, and chlB are encoded by plastid genomes.

29 ination of the activities of the nuclear and plastid genomes.

30 oring the gene uptake from mitochondrial and plastid genomes.

31 traspecific diversity and evolution of their plastid genomes.

32 plastid DNA and selected to remove wild-type plastid genomes.

33 dence for divergent evolution of fucoxanthin plastid genomes.

34 gy that involve the multistep engineering of plastid genomes.

35 angement) and transcription-level studies of plastid genomes.

36 lts in the context of other legume and rosid plastid genomes.

37 to the highly elevated evolutionary rates in plastid genomes.

38 variation in the cranberry mitochondria and plastid genomes.

39 es real-time coordination of the nuclear and plastid genomes.

40 have been characterized for parasitic plant plastid genomes [5, 8-11], the nuclear genome and transc

41 ic codA has been introduced into the tobacco plastid genome and 5FC was used to select against tissue

42 th transcriptome sequencing, to search for a plastid genome and an associated gene expression system

43 We sequenced the plastid genome and confirmed that it lacks the full comp

44 of plastid DNA covering about 94 kb (83%) of plastid genome and including one or more full-length int

45 lized form of the protein interacts with the plastid genome and influences genome stability and plast

46 t is associated with DNA from throughout the plastid genome and with a subset of plastid RNAs that in

47 lastid-LCGbase contains information from 470 plastid genomes and exhibits several unique features.

48 t of GFP that can be introduced into tobacco plastid genomes and is highly expressed in regenerated p

49 of retention versus loss for photosynthesis, plastid genomes, and plastid organelles.

50 Exceptions to this universal plastid genome architecture are very few and include the

51 otes, and highlights unexpected variation in plastid genome architecture.

52 Deletions in the plastid genome are known to occur by recombination betwe

53 Furthermore, the fertile and CMS plastid genomes are conserved, differing only by zero to

54 Angiosperm plastid genomes are generally conserved in gene content

55 The transgenic plastid genomes are products of a multistep process, inv

56 Plastid genomes are relatively small and conserved DNA m

57 The transforming DNA integrates into the plastid genome by homologous recombination via plastid t

58 king plastid DNA to target insertions in the plastid genome by homologous recombination.

59 ch an attB site has been incorporated in the plastid genome by homologous recombination.

60 and the constructs were introduced into the plastid genome by particle bombardment.

61 nt metabolites through transformation of the plastid genome by relocating a native gene from the nucl

62 enetic evidence, replacement of the resident plastid genome by the alien genome occurs in the absence

63 based on incorporation of foreign DNA in the plastid genome by the plastid's homologous recombination

64 The plastid genomes containing these divergent rpoA genes ha

65 tive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RN

66 Although the E. tenella plastid genome contains an almost identical set of genes

67 Phylogenetic reconstruction of changes in plastid genome content revealed that an accelerated rate

68 ual process, during which all the 300-10,000 plastid genome copies are uniformly altered.

69 Given the high number of plastid genome copies in a cell, transformation unavoida

70 n possible in a fraction of the 1,000-10,000 plastid genome copies in a cell.

71 selective amplification of rare transformed plastid genome copies to obtain genetically stable trans

72 f marker genes from the approximately 10,000 plastid genome copies without transformation of the plan

73 he ptDNA of P. uvella represents the largest plastid genome currently reported from a nonphotosynthet

74 Both recombination pathways result in plastid genome deletions.

75 Plastid genomes differ substantially between these algae

76 endent protocol that enables manipulation of plastid genomes directly in plants to yield genetically

77 The deleted plastid genomes disappeared in the seed progeny lacking

78 duced an inactive gfp* gene into the tobacco plastid genome downstream of the selectable spectinomcyi

79 ransgene excision occurs completely from all plastid genomes early in plant development.

80 Some plastid genomes encode tmRNA, but smpB genes have only b

81 Plastid genome-encoded subunits are synthesized by 70S c

82 consistent with our current understanding of plastid genome evolution in photosynthetic plants.

83 present herein a model of the trajectory of plastid genome evolution under progressively relaxed fun

84 omic approaches have significantly clarified plastid genome evolution, the movement of endosymbiont g

85 or the development of more complex models of plastid genome evolution.

86 Our results confirm that grass plastid genomes exhibit acceleration in both genomic rea

87 ncing expression of nuclear genes related to plastid genome expression and tetrapyrrole biosynthesis

88 ibiotic resistance genes incorporated in the plastid genome facilitate maintenance of transplastomes

89 of 83 protein-coding and rRNA genes from the plastid genome for 86 species of seed plants, including

90 recombinase target sites incorporated in the plastid genome for marker gene excisions are too short t

91 euglenoid plastids, the organization of the plastid genome, group III intron evolution and euglenoid

92 holly or partially within the dinoflagellate plastid genome have a markedly accelerated rate of evolu

93 have been reported, but rates in Geraniaceae plastid genomes have not been characterized.

94 In contrast, the mitochondrial and plastid genomes have the smallest gene content among fun

95 aadA shows that, despite the multiplicity of plastid genomes, homology-based excision ensures complet

96 The other alternative pathway uncovered a plastid genome 'hot spot' of recombination composed of m

97 eae) reveals the largest and most rearranged plastid genome identified to date.

98 ion, influence the segregation of transgenic plastid genomes, identify loci affecting dao function in

99 e retention of highly diverged and truncated plastid genome in Cytinus.

100 These genes are typically localized to the plastid genome in higher plants and algae except rbcS, w

101 The plastid genome in higher plants encodes subunits of an E

102 The plastid genome in photosynthetic higher plants encodes s

103 The nature and extent of the plastid genome in the dominant perdinin-containing dinof

104 r cell-to-cell movement of the entire 161-kb plastid genome in these plants, most likely in intact pl

105 The plastid genome in these taxa is reduced to single-gene m

106 eins are distributed between the nuclear and plastid genomes in higher plants, and coordination of th

107 y surpassing the other five sequenced legume plastid genomes in novel DNA content.

108 Plastid genomes in the flowering plant family Geraniacea

109 polymerase, POLIB, act as safeguards against plastid genome instability in Arabidopsis (Arabidopsis t

110 Taken together, these results indicate that plastid genome instability induces an oxidative burst th

111 hy3polIb-1 and ciprofloxacin-treated plants, plastid genome instability is associated with increased

112 le is known about the direct consequences of plastid genome instability.

113 The AT-rich E. tenella plastid genome is a 35-kb circular element.

114 gae, particularly in structure: The Chromera plastid genome is a linear, 120-kb molecule with large a

115 Localization of the bar gene in the plastid genome is an attractive alternative to incorpora

116 The plastid genome is divided early in this process, associa

117 rporation of a selectable marker gene in the plastid genome is essential to uniformly alter the thous

118 The wild-type plastid genome is expected to be stable, even if CRE is

119 The plastid genome is highly conserved among plant species,

120 s only three protein-coding genes, and their plastid genome is reduced to a 35-kb-long circle.

121 Stable genetic transformation of the plastid genome is reported in a higher plant, Nicotiana

122 The function of the 35 kb plastid genome is unknown, but its evolutionary origin a

123 egration of foreign DNA into algal and plant plastid genomes is a rare event, with only a few known e

124 ker excision proved that manipulation of the plastid genomes is feasible within an intact plant.

125 When uniform transformation of all plastid genomes is obtained, the marker genes can be exc

126 a member of Alveolata with the least derived plastid genome known for the whole group.

127 and structure, life-history strategies, and plastid genomes, little is known about the diversity of

128 Remarkably, the plastid genome of A. protothecoides is only slightly lar

129 ribution of PEP and NEP promoters within the plastid genome of barley (Hordeum vulgare).

130 ed with rearrangement endpoints, whereas the plastid genome of E. carvifolium is streamlined at 116 k

131 ortant gene (sufB) carried on the degenerate plastid genome of malaria and related parasites.

132 Fifteen genes that are always found on the plastid genome of other algae and plants have been trans

133 antial molecular evolutionary changes to the plastid genome of parasites before the loss of photosynt

134 Here, we present the plastid genome of Polytoma uvella: to our knowledge, the

135 minicircles, forming part of the fragmented plastid genome of the dinoflagellate Amphidinium opercul

136 structure, gene content, and synteny in the plastid genome of this Cuscuta species belonging to the

137 The plastid genome of Trifolium subterraneum is 144,763 bp,

138 We report on the plastid genome of Typha latifolia, the first non-grass P

139 with large and divergent genes, whereas the plastid genome of Vitrella is a highly compact circle th

140 gh-throughput sequencing to analyze complete plastid genomes of 91 total Cucurbita samples, comprisin

141 -encoded RNA polymerase (PEP) persist in the plastid genomes of all photosynthetic angiosperms.

142 We found that the plastid genomes of B37 and B73 lines are identical.

143 The plastid genomes of seed plants contain a conserved set o

144 The plastid genomes of several plants contain homologues, te

145 The plastid genomes of some nonphotosynthetic parasitic plan

146 Plastid genomes of the grasses (Poaceae) are unusual in

147 of two cbbX genes encoded by the nuclear and plastid genomes of the red algae Cyanidioschyzon merolae

148 The genetic maps of the plastid genomes of these two organisms are extremely sim

149 . texanum from clade I demonstrates that the plastid genomes of these two species encode the same num

150 ers for plastid genotyping, we sequenced the plastid genomes of three fertile maize lines (B37, B73,

151 Here, we compare the plastid genomes of two "transitional" green algae: the p

152 We sequenced plastid genomes of two ochrophytes, Ochromonas sp. CCMP1

153 Other studies, using whole plastid genomes of various algae and land plants, found

154 Among other sequenced chlorophyte plastid genomes, only that of the green alga Chlorella v

155 ity to express proteins at a high level, the plastid genome (plastome or ptDNA) is an increasingly po

156 hetic green algae, we generated the complete plastid genome (plastome) and mitochondrial genome (mito

157 Past work involving the plastid genome (plastome) of holoparasitic plants has be

158 In parasitic plants, the reduction in plastid genome (plastome) size and content is driven pre

159 inverted repeat (IR) boundary changes in the plastid genome (plastome), nucleotide substitution rates

160 Additionally, a comparative investigation of plastid genomes (plastomes) grounded within this phyloge

161 plants lost the organizational stability in plastid genomes (plastomes) that evolved in their algal

162 evolutionary patterns and processes in fern plastid genomes (plastomes), and we include some new pla

163 g deleted genomes as a minor fraction of the plastid genome population were fertile and phenotypicall

164 was transmitted by pollen rather than small plastid genome (ptDNA) fragments.

165 Successful manipulation of the plastid genome (ptDNA) has been carried out so far only

166 The plastid genome (ptDNA) of higher plants is highly polypl

167 ant with a uniform population of transformed plastid genomes (ptDNA) takes two cycles of plant regene

168 Observed plastid genome rearrangements are specific to engineered

169 seem to have undergone more nearly complete plastid genome reduction than other eukaryotes.

170 pectively), their combined deletion from the plastid genome results in synthetic lethality under auto

171 Similarly, plastid genome retention is strongly linked to the reten

172 Overall, the P. uvella and Polytomella plastid genomes reveal two very different evolutionary p

173 quently accompanied by a large deletion of a plastid genome segment which includes the tRNA-ValUAC ge

174 ong PCR approach to obtain large portions of plastid genome sequence from Cuscuta sandwichiana in ord

175 We also report the complete plastid genome sequence of Ceratophyllum demersum.

176 The complete plastid genome sequence of Pelargonium X hortorum (Geran

177 The plastid genome sequence of the parasitic liverwort Aneur

178 With the addition of this coccidian plastid genome sequence, we attempted to reexamine the a

179 anscriptomic analyses of currently available plastid genome sequences and nuclear transcriptome data

180 Both gene sequences and complete plastid genome sequences were assembled and analyzed fro

181 a recent surge in the availability of grass plastid genome sequences, but a comprehensive comparativ

182 Taking advantage of the expanded sampling of plastid genome sequences, we revisited the phylogenetic

183 Mitochondrial and plastid genomes show a wide array of architectures, vary

184 When all known plastid genome structural rearrangements in parasitic an

185 linked to the retention of two genes in the plastid genome, sufB and clpC, altogether suggesting a r

186 d cell division cycle 2) and a gene from the plastid genome (the elongation factor Tu).

187 uced into the tobacco (Nicotiana tabacum L.) plastid genome through homologous recombination.

188 rmed into two different sites of the tobacco plastid genome through site-specific insertion to obtain

189 o use protein-coding sequences from complete plastid genomes to characterize rates and patterns of se

190 roteins for stored PEP to guaranty efficient plastid genome transcription during germination.

191 The plastid genome trees also provide strong support for a s

192 Angiosperm plastid genomes typically encode approximately 80 polype

193 marker gene for stable transformation of the plastid genome was developed that is similarly efficient

194 marker gene for stable transformation of the plastid genome was developed that is similarly efficient

195 Furthermore, we have found that the entire plastid genome was transmitted by pollen rather than sma

196 were targeted to different locations on the plastid genome, we reasoned that segregation of the two

197 atterns in the highly rearranged Geraniaceae plastid genomes, we propose a model of aberrant DNA repa

198 The transformed plastid genomes were stable in the absence of Int.

199 ribosomal proteins (PRPs) are encoded in the plastid genome, whereas the remaining 13 are encoded by

200 me rearrangements are specific to engineered plastid genomes, which contain at least one loxP site or

201 er, our results reveal a dynamic and unusual plastid genome whose existence in a model organism will

202 First we transformed the tobacco plastid genome with the pCK2 vector in which the spectin

203 Comparisons of the Trifolium plastid genome with the Plant Repeat Database and search

204 corporate multiple transgenes in nuclear and plastid genomes with computational modelling to design t

205 P. wickerhamii, making it among the smallest plastid genomes yet observed from photosynthetic green a