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1 single polyadenylation site 229 nt from the poly-A tail.
2 capture of information distant from the mRNA poly-A tail.
3 leolytic cleavage followed by synthesis of a poly(A) tail.
4 codons or translational readthrough into the poly(A) tail.
5 tly translated in vivo despite the lack of a poly(A) tail.
6 nding that PUMs repress an mRNA that lacks a poly(A) tail.
7 e U-rich internal loop of the ENE and the 3'-poly(A) tail.
8 cription or translation or the status of the poly(A) tail.
9 capping by the addition of a CUCU tag to the poly(A) tail.
10 that hybridizes to and protects the PAN RNA poly(A) tail.
11 ling in ribosomes on translation through the poly(A) tail.
12 pended upon the mRNA's 5' cap but not its 3' poly(A) tail.
13 s end in a conserved stem-loop rather than a poly(A) tail.
14 t recognize the cis-elements and produce the poly(A) tail.
15 ndent on the length of both the mRNA and the poly(A) tail.
16 nterplay between the 5' m(7)G cap and the 3' poly(A) tail.
17 X(L) mRNA was dependent upon the presence of poly(A) tail.
18 PEB, but after polyadenylation, it binds the poly(A) tail.
19 g in the stem-loop but not a reporter with a poly(A) tail.
20 ot distinguish RNAs with or without a cap or poly(A) tail.
21 mRNAs in that they possess a 5' cap and a 3' poly(A) tail.
22 A-like intramolecular hybridization with the poly(A) tail.
23 p like those of cellular mRNAs but lack a 3' poly(A) tail.
24 expressed alpha-globin mRNA and a 72-residue poly(A) tail.
25 RNA and the subsequent deadenylation of the poly(A) tail.
26 lement (3' CSE) immediately preceding the 3'-poly(A) tail.
27 MKIIalpha protein and mRNA by shortening its poly(A) tail.
28 nd cytoplasmic lengthening of the neg-1 mRNA poly(A) tail.
29 n the renal outer medulla appeared to lack a poly(A) tail.
30 precursor, cleaves at that site, and adds a poly(A) tail.
31 pore complexes and the length of transcript poly(A) tails.
32 of single-stranded, positive-sense RNAs with poly(A) tails.
33 ust circadian rhythms in the length of their poly(A) tails.
34 these RNAs while stabilizing mRNAs with long poly(A) tails.
35 iduals were shown to have severely truncated poly(A) tails.
36 uncated AU-rich mRNAs lacking the 3' UTR and poly(A) tails.
37 nto structures previously thought to be long poly(A) tails.
38 A and mRNA; and the Distal Site, which binds poly(A) tails.
39 o fractions dependent on the length of their poly(A) tails.
40 ly(A) tails while other mRNAs to have longer poly(A) tails.
41 ed with maintenance and/or extension of long poly(A) tails.
42 4 with mRNAs containing critically shortened poly(A) tails.
43 translational repression by miRNAs require a poly(A) tail, a 3' histone stem-loop being an effective
44 processes, it is important to identify these poly(A) tails accurately in transcriptome sequencing dat
47 of a targeted gene, subsequently inhibiting poly(A) tail addition and leading to degradation of that
48 on in most eukaryotes, involves cleavage and poly(A) tail addition at the 3' end of mRNAs at the poly
50 of U1 snRNP to the target pre-mRNA inhibits poly(A)-tail addition, causing degradation of that RNA s
52 ansport and translation, suggesting that the poly(A)-tail also provides a basis for eukaryotes to eff
53 cells accomplish similar decoupling through poly(A) tail alterations to ensure that dormant transcri
54 ymerase in the maintenance and repair of the poly(A) tail, an element required for replication of the
56 ells, the oocyte transcriptome has a shorter poly(A) tail and a higher relative proportion of termina
57 insertion of uridylate residues between the poly(A) tail and a non-wild-type 3' sequence can restore
58 down cells, p53 mRNA has an abnormally short poly(A) tail and a reduced translational efficiency, res
59 on of an mRNA is strongly impacted by its 3' poly(A) tail and associated poly(A)-binding proteins (PA
60 nteraction of topoisomerase IIalpha with the poly(A) tail and G/U-rich 3'-untranslated region (3'-UTR
61 nome of TV contains 6,714 nucleotides plus a poly(A) tail and is organized into three open reading fr
62 FLuc production rate that was dependent on a poly(A) tail and poly(A)-binding protein, but was indepe
63 tramolecular RNA clamp, sequestering the PAN poly(A) tail and preventing the initiation of RNA decay.
65 rotein(s) that simultaneously recognizes the poly(A) tail and small edited element and which blocks t
66 s between polysomes and P-bodies and how the poly(A) tail and the associated poly(A) binding protein
67 proximity of the termination codon to the 3' poly(A) tail and the poly(A) RNA-binding protein, PAB1,
68 nctionally replaced interactions between the poly(A) tail and the poly(A)-binding protein (PABP) to a
69 As: efficiently translated mRNAs have longer poly(A) tails and are shorter, more stable, and more eff
70 cells into two fractions with short and long poly(A) tails and compared them by microarray analysis.
71 ocol that queries the junctions of 3'UTR and poly(A) tails and confidently maps the poly(A) tags to t
72 form enhances translation and elongates the poly(A) tails and imparts its translational state to the
74 either GLD-2 or RNP-8 resulted in shortened poly(A) tails and lowered abundance of four target mRNAs
75 length, while GC-rich Alus only in their 3' poly(A) tails and middle A-stretches, with differences d
76 ource tool for finding the precise border of poly(A) tails and other homopolymers in raw mRNA sequenc
77 levels of CDK11 increased the length of HIV poly(A) tails and the stability of mature viral transcri
78 ort a new technique to analyse the length of poly(A) tails and to separate a mixed population of mRNA
79 majority of these products contained intact poly(A) tails and were bound by the poly(A) binding prot
80 ion, independent of 7-methylguanylate cap or poly(A) tail, and prompts mRNA redistribution to silenci
81 inding protein N1 (PABPN1) and PABPC1 at the poly(A) tail, and, provided biogenesis involves pre-mRNA
84 a mice have mild histologic defects, shorter poly(A) tails, and evidence of mitochondrial damage.
85 ith much less starting material, the lack of poly(A)-tails, and the fact that the messages can be pol
86 he first study to reveal that TATA boxes and poly (A) tails are direct targets for BBR in its regulat
87 esent study demonstrates that TATA boxes and poly (A) tails are the first and second primary targets
88 following: (i) the wild-type 3' CSE and the poly(A) tail are required, (ii) the poly(A) tail must be
93 on of mRNA poly(A) tail length revealed that poly(A) tails are longer than normal in a tpa1Delta stra
94 new insights into how transcripts that lack poly(A) tails are stabilized and regulated and suggest t
96 rity of both forms requires the mRNA cap and poly(A) tail, as well as eIF4E, eIF4G, Pab1 and eIF3, an
98 transcripts have a 5' monophosphate, lack a poly(A) tail at the 3' end, and contain no introns; thes
100 timulated hypothalamus shortens the AVP mRNA poly(A) tail at the same time as reducing transcript abu
101 d of the Rous sarcoma virus, just inside the poly(A) tail, at the same time the Gilbert group at Harv
104 tic initiation factor 4E (eIF4E), eIF4G, and poly(A) tail-binding protein (PABP) that circularizes mR
105 cal structure that could not only shield the poly(A) tail but also serve as a scaffold for the assemb
106 ctor 4E (eIF4E) at the cap and PABPC1 at the poly(A) tail, but that lacks detectable EJCs and PABPN1.
107 ranscribed by Pol II and acquire 5' caps and poly(A) tails, but only mRNAs are translated into protei
109 We demonstrate that mRNA in yeast lacking a poly(A) tail can be destabilized by introduction of a pr
111 end in a stem-loop structure instead of the poly(A) tail characteristic of all other mature mRNAs.
112 Many plant viruses without 5' caps or 3' poly(A) tails contain 3' proximal, cap-independent trans
113 w dwarf virus RNA, lacking a 5' cap and a 3' poly(A) tail, contains a cap-independent translation ele
114 ion in myoblasts led to a shortening of mRNA poly(A) tails, demonstrating the cellular function of PA
115 ing proteins directly recruit PABP, in a non-poly(A) tail-dependent manner, to stimulate the small su
119 tion motif of HuD, the domain that binds the poly(A) tail, eliminated the branch-specific expression
120 iously shown to be necessary for cytoplasmic poly(A) tail elongation and translational activation of
131 ware of focus exclusively on the trimming of poly(A) tails, failing to provide the detailed informati
132 in part through the removal of PAB1 from the poly(A) tail following its self-association into multime
133 onadenylated RNA is sufficient to switch the poly(A) tail from a destabilizing to a stabilizing eleme
134 nterestingly, REF/Aly appears to protect the poly(A) tail from deadenylation, and REF/Aly-stabilized
138 w dwarf virus mRNA, which lacks both cap and poly(A) tail, has a translation element (3'-BTE) in its
139 pair DNA hairpin attached to a 50-nucleotide poly-A tail (HP-A(50)) is threaded into an alphaHL chann
141 polyadenylation or retain a reasonably long poly(A) tail if they are to return to the translating po
144 n may be relevant, as the positioning of the poly(A) tail in mRNAs influences the length of the 3'-un
146 earch for the enzymes responsible for adding poly(A) tails in Chlamydomonas and Arabidopsis organelle
148 efining a new and unexpected role for 3' end poly(A) tails in the nuclear surveillance and turnover o
150 port that depletion of Glc7 causes shortened poly(A) tails in vivo and accumulation of phosphorylated
152 t is a polyU sequence that can interact with poly(A) tails, inhibit the association of poly(A)-bindin
153 e eukaryotic initiation factor (eIF) 4G/PABP/poly(A) tail interaction is achieved instead through the
155 e primers are removed by exonuclease I and a poly(A) tail is added to the 3' end of the first-strand
158 RNA (mRNA) translation initiation by the 3' poly(A) tail is mediated through interaction of poly(A)-
161 sequence motifs that signal the addition of poly(A) tails is essential to improved genome annotation
162 s are polyadenylated in the nucleus, and the poly(A)-tail is required for efficient mRNA export and t
167 ar PAPS isoforms control de novo synthesized poly(A) tail length and hence expression of specific sub
168 a function for Hnrnpa1 in the regulation of poly(A) tail length and translation of maternal mRNAs th
171 n of pgc is concurrent with extension of its poly(A) tail length but appears largely independent of t
172 NA show growth defects as well as defects in poly(A) tail length but do not accumulate poly(A) RNA in
174 a suggest that NPM1 has an important role in poly(A) tail length determination and may help network 3
175 st, highly reproducible and minor changes in poly(A) tail length distribution are easily detected.
177 cial for gene expression and perturbation of poly(A) tail length has been linked to a human neurodege
178 etic data indicate that dNab2 restricts bulk poly(A) tail length in vivo, suggesting that this functi
180 mportantly, we found that the rhythmicity in poly(A) tail length is closely correlated with rhythmic
183 also needed during oogenesis to regulate the poly(A) tail length of dmos during oocyte maturation and
184 ial action of RNA binding proteins modulates poly(A) tail length of maternal mRNAs, leading to asymme
185 A)denylome" analysis, a method that measures poly(A) tail length of transcripts in a global manner, a
186 se transcripts do not exhibit rhythmicity in poly(A) tail length or steady-state mRNA level, despite
187 basis for understanding its function in both poly(A) tail length regulation and in the compaction of
188 ly(A) RNA binding protein, Nab2, facilitates poly(A) tail length regulation together with targeting t
192 d translation, and enzymes that regulate the poly(A) tail length significantly impact protein profile
196 define the function of PABPN1 in control of poly(A) tail length, little is known about the role of P
197 nsistent with a potential role in regulating poly(A) tail length, Tpa1p was also found to coimmunopre
206 During egg activation, relative changes in poly(A)-tail length, and thus translational efficiency,
208 ols germ line cyst development by regulating poly(A) tail lengths of several targets including Cyclin
210 RNAs, but difficulties in globally measuring poly(A)-tail lengths have impeded greater understanding
211 , we profiled translational efficiencies and poly(A)-tail lengths throughout Drosophila oocyte matura
213 nuclear-retained noncoding RNA with a short poly(A) tail-like moiety and a small tRNA-like cytoplasm
214 cay is generally initiated by removal of the poly(A) tail mediated by the Ccr4-Caf1-Not complex.
215 ng, and therefore reduced canonical (cap-and-poly(A)-tail-mediated) translation, remains undiscovered
216 ve levels of A17-PABPN1 and detected shorter poly(A) tails, modest changes in poly(A) signal (PAS) us
217 and the poly(A) tail are required, (ii) the poly(A) tail must be a minimum of 11 to 12 residues in l
218 these results indicate that, in addition to poly(A) tails, Nab2 can also recognize sequence motifs e
219 These results establish that neither the poly(A) tail nor PAB1 is required in yeast for discrimin
220 space between the termination codon and the poly(A) tail nor the binding of steady-state, largely hy
224 tic cells, the shortening and removal of the poly(A) tail of cytoplasmic mRNA by deadenylase enzymes
226 al protein, many copies of which bind to the poly(A) tail of eukaryotic mRNAs to promote translation
227 GLD-2-GLD-3 acts by extending the short poly(A) tail of germ-line-specific mRNAs, switching them
228 ng a reverse primer that hybridizes with the poly(A) tail of HIV-1 mRNAs, anchored by conserved viral
229 roximately 25% of the expressed genes have a poly(A) tail of less than 30 residues in a significant p
232 d this is accompanied by extension of the 3' poly(A) tail of the AVP mRNA, and the up-regulation of t
234 mitochondrial mRNAs, although the length of poly(A) tails of mitochondrial transcripts were unaffect
235 ing an epitope-tagged protein that binds the poly-A tail of mRNAs (FLAG::PAB-1) from an intestine-spe
238 transferase reactions, leads to synthesis of poly(A) tails on the 3' end of VSV mRNAs that are 10- or
240 eir 3' untranslated regions (UTRs) have long poly(A) tails; once the RNAs are spliced and transported
241 s the enzyme responsible for the addition of poly(A) tails onto RNA molecules in Escherichia coli.
242 , including mRNAs, for degradation by adding poly(A) tails onto their 3' ends, these data indicate th
244 ssenger RNA function is controlled by the 3' poly(A) tail (PAT) and poly(A)-binding protein (PABP).
247 largely to those obtained from conventional poly-A tail purification methods, indicating both enumer
251 encountered, translation continues into the poly(A) tail, resulting in C-terminal appendage of a pol
252 are uncoupled from transcription and exhibit poly(A) tail rhythms even though the steady-state mRNA l
254 ondrial ribosome profiling and mitochondrial poly(A)-tail RNA sequencing (MPAT-Seq) assay, we identif
257 tent with this, Pum-Brat repression leads to poly(A) tail shortening and mRNA degradation in tissue c
259 the decay of SINV RNAs was not initiated by poly(A) tail shortening in either cell line except when
263 yadenylation, which indicated that selective poly(A)-tail shortening primarily specifies these change
265 slation on transcripts containing or lacking poly(A) tails, suggesting that cleavage of PABP and IRES
269 re is a >30-fold increase of PAP I-dependent poly(A) tails that are </=10 nt in length coupled with a
270 translationally repressed mRNAs contain long poly(A) tails that are dramatically shortened during the
272 (NOT)," which catalyzes the removal of mRNA poly-(A) tails, the first obligatory step in mRNA decay.
274 t decapping is preceded by shortening of the poly(A) tail to a length that can no longer support tran
276 elements are linked to the propensity of the poly(A) tail to engage in double-stranded structures.
277 mRNA polyadenylation, the addition of a poly(A) tail to the 3'-end of pre-mRNA, is a process cri
280 nal step of mRNA biogenesis, trimming of the poly(A) tail to the length found on newly exported mRNAs
283 ter trimming, amplification primer trimming, poly-A tail trimming, vector screening and low quality r
284 arise given that ribosomal RNA lacks the 3' poly-A tail typically associated with messenger RNA.
286 Shear-induced lengthening of the eNOS 3' poly(A) tail was the result of increased nuclear polyade
287 polymerase, and the mRNA transcribed, with a poly(A) tail, was efficiently utilized in an in vitro tr
288 where the majority of the PAP I synthesized poly(A) tails were after the Rho-independent transcripti
289 regulated by RNAi in Chlamydomonas, very few poly(A) tails were detected in chloroplasts for the atpB
290 the number or sequence of mitochondrial mRNA poly(A) tails, where unexpectedly we found, in addition
292 EMT/metastasis-related mRNAs to have shorter poly(A) tails while other mRNAs to have longer poly(A) t
293 Orb2 represses translation and removes mRNA poly(A) tails, while the oligomeric form enhances transl
294 turely translated: a transcript with a short poly(A) tail will remain untranslated, whereas elongatin
295 on, we complexed synthetic mRNA containing a poly A tail with PABPs in a stoichiometric manner and st
297 nstrate that our tool can precisely identify poly(A) tails with near perfect accuracy at the speed re
298 comprised of 2417 nucleotides, excluding the poly(A) tail, with a large open reading frame of 2106 nu
299 onfirm that cordycepin reduces the length of poly(A) tails, with some mRNAs being much more sensitive
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