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1 hesize involves stalling of ribosomes on the polyA tail.
2 e end in a conserved stem-loop rather than a polyA tail.
3 MKIIalpha protein and mRNA by shortening its poly(A) tail.
4 nd cytoplasmic lengthening of the neg-1 mRNA poly(A) tail.
5 n the renal outer medulla appeared to lack a poly(A) tail.
6 precursor, cleaves at that site, and adds a poly(A) tail.
7 leolytic cleavage followed by synthesis of a poly(A) tail.
8 codons or translational readthrough into the poly(A) tail.
9 tly translated in vivo despite the lack of a poly(A) tail.
10 nding that PUMs repress an mRNA that lacks a poly(A) tail.
11 e U-rich internal loop of the ENE and the 3'-poly(A) tail.
12 cription or translation or the status of the poly(A) tail.
13 capping by the addition of a CUCU tag to the poly(A) tail.
14 that hybridizes to and protects the PAN RNA poly(A) tail.
15 ling in ribosomes on translation through the poly(A) tail.
16 pended upon the mRNA's 5' cap but not its 3' poly(A) tail.
17 s end in a conserved stem-loop rather than a poly(A) tail.
18 t recognize the cis-elements and produce the poly(A) tail.
19 ndent on the length of both the mRNA and the poly(A) tail.
20 nterplay between the 5' m(7)G cap and the 3' poly(A) tail.
21 X(L) mRNA was dependent upon the presence of poly(A) tail.
22 PEB, but after polyadenylation, it binds the poly(A) tail.
23 g in the stem-loop but not a reporter with a poly(A) tail.
24 ot distinguish RNAs with or without a cap or poly(A) tail.
25 mRNAs in that they possess a 5' cap and a 3' poly(A) tail.
26 POP2 levels induce a lengthening of tim mRNA poly(A) tail.
27 aves pre-mRNAs at a specific site and adds a poly(A) tail.
28 ed with maintenance and/or extension of long poly(A) tails.
29 le for mixed tailing and protection of viral poly(A) tails.
30 4 with mRNAs containing critically shortened poly(A) tails.
31 of single-stranded, positive-sense RNAs with poly(A) tails.
32 ust circadian rhythms in the length of their poly(A) tails.
33 these RNAs while stabilizing mRNAs with long poly(A) tails.
34 iduals were shown to have severely truncated poly(A) tails.
35 is known to trim hTR precursors by removing poly(A) tails.
36 uncated AU-rich mRNAs lacking the 3' UTR and poly(A) tails.
37 nto structures previously thought to be long poly(A) tails.
38 A and mRNA; and the Distal Site, which binds poly(A) tails.
39 o fractions dependent on the length of their poly(A) tails.
40 -seq that directly sequences the full-length poly(A) tails.
41 ter transcripts lack splicing signatures and poly(A) tails.
42 pore complexes and the length of transcript poly(A) tails.
43 ly(A) tails while other mRNAs to have longer poly(A) tails.
44 rse transcription polymerase chain reaction, polyA tail, 3' rapid amplification of complementary DNA
46 bundance of the mRNA subpopulation with long poly(A) tails (a rough proxy for mRNA translatability).
47 processes, it is important to identify these poly(A) tails accurately in transcriptome sequencing dat
50 of a targeted gene, subsequently inhibiting poly(A) tail addition and leading to degradation of that
51 on in most eukaryotes, involves cleavage and poly(A) tail addition at the 3' end of mRNAs at the poly
52 of U1 snRNP to the target pre-mRNA inhibits poly(A)-tail addition, causing degradation of that RNA s
53 ansport and translation, suggesting that the poly(A)-tail also provides a basis for eukaryotes to eff
54 cells accomplish similar decoupling through poly(A) tail alterations to ensure that dormant transcri
55 ells, the oocyte transcriptome has a shorter poly(A) tail and a higher relative proportion of termina
56 down cells, p53 mRNA has an abnormally short poly(A) tail and a reduced translational efficiency, res
57 on of an mRNA is strongly impacted by its 3' poly(A) tail and associated poly(A)-binding proteins (PA
58 nteraction of topoisomerase IIalpha with the poly(A) tail and G/U-rich 3'-untranslated region (3'-UTR
59 nome of TV contains 6,714 nucleotides plus a poly(A) tail and is organized into three open reading fr
60 FLuc production rate that was dependent on a poly(A) tail and poly(A)-binding protein, but was indepe
61 tramolecular RNA clamp, sequestering the PAN poly(A) tail and preventing the initiation of RNA decay.
62 s between polysomes and P-bodies and how the poly(A) tail and the associated poly(A) binding protein
63 proximity of the termination codon to the 3' poly(A) tail and the poly(A) RNA-binding protein, PAB1,
64 nctionally replaced interactions between the poly(A) tail and the poly(A)-binding protein (PABP) to a
65 As: efficiently translated mRNAs have longer poly(A) tails and are shorter, more stable, and more eff
66 can therefore interact with mRNAs via their poly(A) tails and caps, as well as through sequence-spec
67 cells into two fractions with short and long poly(A) tails and compared them by microarray analysis.
68 ocol that queries the junctions of 3'UTR and poly(A) tails and confidently maps the poly(A) tags to t
69 form enhances translation and elongates the poly(A) tails and imparts its translational state to the
71 either GLD-2 or RNP-8 resulted in shortened poly(A) tails and lowered abundance of four target mRNAs
72 length, while GC-rich Alus only in their 3' poly(A) tails and middle A-stretches, with differences d
73 ource tool for finding the precise border of poly(A) tails and other homopolymers in raw mRNA sequenc
74 n that highly expressed genes can have short poly(A) tails and the elucidation of the seemingly contr
75 levels of CDK11 increased the length of HIV poly(A) tails and the stability of mature viral transcri
76 ort a new technique to analyse the length of poly(A) tails and to separate a mixed population of mRNA
77 majority of these products contained intact poly(A) tails and were bound by the poly(A) binding prot
78 n RNA during cDNA synthesis by aiming at the poly(A)+-tail and (2) introduced a pre-amplification of
79 ion, independent of 7-methylguanylate cap or poly(A) tail, and prompts mRNA redistribution to silenci
80 inding protein N1 (PABPN1) and PABPC1 at the poly(A) tail, and, provided biogenesis involves pre-mRNA
83 a mice have mild histologic defects, shorter poly(A) tails, and evidence of mitochondrial damage.
84 peroxidase (HRP)-biotin/streptavidin to the poly(A) tails, and the oxidation reaction of tetramethyl
85 ith much less starting material, the lack of poly(A)-tails, and the fact that the messages can be pol
91 new insights into how transcripts that lack poly(A) tails are stabilized and regulated and suggest t
93 rity of both forms requires the mRNA cap and poly(A) tail, as well as eIF4E, eIF4G, Pab1 and eIF3, an
94 paving the way for a better understanding of poly(A) tail-associated regulation of gene expression.
95 transcripts have a 5' monophosphate, lack a poly(A) tail at the 3' end, and contain no introns; thes
97 timulated hypothalamus shortens the AVP mRNA poly(A) tail at the same time as reducing transcript abu
98 ions of 3'-untranslated region (UTR) and the poly(A) tails at the transcriptome level, a comprehensiv
100 tic initiation factor 4E (eIF4E), eIF4G, and poly(A) tail-binding protein (PABP) that circularizes mR
101 cal structure that could not only shield the poly(A) tail but also serve as a scaffold for the assemb
102 ctor 4E (eIF4E) at the cap and PABPC1 at the poly(A) tail, but that lacks detectable EJCs and PABPN1.
103 ranscribed by Pol II and acquire 5' caps and poly(A) tails, but only mRNAs are translated into protei
105 obe DNAs, extension reaction of polyadenine (poly(A)) tails by poly(A) polymerase, binding of a terna
106 ve AAA codons, sensing of prematurely placed polyA tails by a specialized RNA-binding protein is a no
107 We demonstrate that mRNA in yeast lacking a poly(A) tail can be destabilized by introduction of a pr
109 end in a stem-loop structure instead of the poly(A) tail characteristic of all other mature mRNAs.
110 Many plant viruses without 5' caps or 3' poly(A) tails contain 3' proximal, cap-independent trans
112 w dwarf virus RNA, lacking a 5' cap and a 3' poly(A) tail, contains a cap-independent translation ele
113 ion in myoblasts led to a shortening of mRNA poly(A) tails, demonstrating the cellular function of PA
114 ing proteins directly recruit PABP, in a non-poly(A) tail-dependent manner, to stimulate the small su
117 tion motif of HuD, the domain that binds the poly(A) tail, eliminated the branch-specific expression
126 ware of focus exclusively on the trimming of poly(A) tails, failing to provide the detailed informati
127 in part through the removal of PAB1 from the poly(A) tail following its self-association into multime
128 nterestingly, REF/Aly appears to protect the poly(A) tail from deadenylation, and REF/Aly-stabilized
133 w dwarf virus mRNA, which lacks both cap and poly(A) tail, has a translation element (3'-BTE) in its
134 polyadenylation or retain a reasonably long poly(A) tail if they are to return to the translating po
135 h the ENE's ability to (i) interact with the polyA tail, (ii) inhibit deadenylation in vitro, and (ii
137 n may be relevant, as the positioning of the poly(A) tail in mRNAs influences the length of the 3'-un
138 earch for the enzymes responsible for adding poly(A) tails in Chlamydomonas and Arabidopsis organelle
141 ovl4, which contained 1794 bp (excluding the polyA tail), including 909 bp of coding region that enco
143 t is a polyU sequence that can interact with poly(A) tails, inhibit the association of poly(A)-bindin
144 e eukaryotic initiation factor (eIF) 4G/PABP/poly(A) tail interaction is achieved instead through the
147 e primers are removed by exonuclease I and a poly(A) tail is added to the 3' end of the first-strand
149 sequence motifs that signal the addition of poly(A) tails is essential to improved genome annotation
151 s tend to possess shorter poly(A)-tails, the poly(A)-tail is not required for the codon-mediated mRNA
152 s are polyadenylated in the nucleus, and the poly(A)-tail is required for efficient mRNA export and t
157 r the rhythmic mRNAs by their peak phases in poly(A) tail length and abundance of the long-tailed sub
158 of previously reported correlations between poly(A) tail length and expression level, and poly(A) ta
159 ar PAPS isoforms control de novo synthesized poly(A) tail length and hence expression of specific sub
160 strongest contributor to the rhythmicity in poly(A) tail length and the rhythmicity in the abundance
161 a function for Hnrnpa1 in the regulation of poly(A) tail length and translation of maternal mRNAs th
163 n of pgc is concurrent with extension of its poly(A) tail length but appears largely independent of t
164 NA show growth defects as well as defects in poly(A) tail length but do not accumulate poly(A) RNA in
166 a suggest that NPM1 has an important role in poly(A) tail length determination and may help network 3
167 st, highly reproducible and minor changes in poly(A) tail length distribution are easily detected.
169 assays have enabled a more detailed look at poly(A) tail length genome-wide throughout many developm
170 cial for gene expression and perturbation of poly(A) tail length has been linked to a human neurodege
171 help of these advances, our understanding of poly(A) tail length has evolved over the past 5 years wi
172 etic data indicate that dNab2 restricts bulk poly(A) tail length in vivo, suggesting that this functi
174 mportantly, we found that the rhythmicity in poly(A) tail length is closely correlated with rhythmic
176 also needed during oogenesis to regulate the poly(A) tail length of dmos during oocyte maturation and
177 ial action of RNA binding proteins modulates poly(A) tail length of maternal mRNAs, leading to asymme
178 A)denylome" analysis, a method that measures poly(A) tail length of transcripts in a global manner, a
179 se transcripts do not exhibit rhythmicity in poly(A) tail length or steady-state mRNA level, despite
180 basis for understanding its function in both poly(A) tail length regulation and in the compaction of
181 ly(A) RNA binding protein, Nab2, facilitates poly(A) tail length regulation together with targeting t
184 d translation, and enzymes that regulate the poly(A) tail length significantly impact protein profile
186 f genes were found to exhibit rhythmicity in poly(A) tail length, and the poly(A) rhythms are strongl
187 We describe strategies for assessing 3' poly(A) tail length, base modifications and transcript h
189 define the function of PABPN1 in control of poly(A) tail length, little is known about the role of P
199 During egg activation, relative changes in poly(A)-tail length, and thus translational efficiency,
203 RNAs, but difficulties in globally measuring poly(A)-tail lengths have impeded greater understanding
204 miRNAs have almost no effect on steady-state poly(A)-tail lengths of their targets in mouse fibroblas
205 , we profiled translational efficiencies and poly(A)-tail lengths throughout Drosophila oocyte matura
208 nuclear-retained noncoding RNA with a short poly(A) tail-like moiety and a small tRNA-like cytoplasm
209 cay is generally initiated by removal of the poly(A) tail mediated by the Ccr4-Caf1-Not complex.
210 ng, and therefore reduced canonical (cap-and-poly(A)-tail-mediated) translation, remains undiscovered
211 ve levels of A17-PABPN1 and detected shorter poly(A) tails, modest changes in poly(A) signal (PAS) us
212 A)-binding proteins (PABs) uniformly bind to poly(A)-tailed mRNAs, regulating their stability and tra
214 these results indicate that, in addition to poly(A) tails, Nab2 can also recognize sequence motifs e
215 These results establish that neither the poly(A) tail nor PAB1 is required in yeast for discrimin
216 space between the termination codon and the poly(A) tail nor the binding of steady-state, largely hy
218 tic cells, the shortening and removal of the poly(A) tail of cytoplasmic mRNA by deadenylase enzymes
220 al protein, many copies of which bind to the poly(A) tail of eukaryotic mRNAs to promote translation
221 GLD-2-GLD-3 acts by extending the short poly(A) tail of germ-line-specific mRNAs, switching them
222 ng a reverse primer that hybridizes with the poly(A) tail of HIV-1 mRNAs, anchored by conserved viral
223 roximately 25% of the expressed genes have a poly(A) tail of less than 30 residues in a significant p
227 d this is accompanied by extension of the 3' poly(A) tail of the AVP mRNA, and the up-regulation of t
229 mitochondrial mRNAs, although the length of poly(A) tails of mitochondrial transcripts were unaffect
230 synthesis from RNA templates, followed by 3' polyA tailing of the single-stranded cDNA products and d
233 transferase reactions, leads to synthesis of poly(A) tails on the 3' end of VSV mRNAs that are 10- or
235 eir 3' untranslated regions (UTRs) have long poly(A) tails; once the RNAs are spliced and transported
236 s the enzyme responsible for the addition of poly(A) tails onto RNA molecules in Escherichia coli.
237 , including mRNAs, for degradation by adding poly(A) tails onto their 3' ends, these data indicate th
238 The longest NQO1 transcript has increased poly(A) tail (PA-tail) length that accounts for the diff
239 mination in vitro However, after binding the poly(A) tail, PABP became insensitive to suppression by
240 ssenger RNA function is controlled by the 3' poly(A) tail (PAT) and poly(A)-binding protein (PABP).
245 e show that KPAF5 stabilizes KPAF4 to enable poly(A) tail recognition, which likely leads to mRNA sta
248 a two-color assay to simultaneously monitor poly(A) tail removal from different RNAs, we demonstrate
250 encountered, translation continues into the poly(A) tail, resulting in C-terminal appendage of a pol
251 are uncoupled from transcription and exhibit poly(A) tail rhythms even though the steady-state mRNA l
253 ondrial ribosome profiling and mitochondrial poly(A)-tail RNA sequencing (MPAT-Seq) assay, we identif
254 NA-binding proteome (RBPome) associated with polyA-tailed RNA species in murine ciliated epithelial c
255 smsDGE involves a reverse-transcription and polyA-tailing sample preparation procedure followed by s
258 tent with this, Pum-Brat repression leads to poly(A) tail shortening and mRNA degradation in tissue c
260 the decay of SINV RNAs was not initiated by poly(A) tail shortening in either cell line except when
265 yadenylation, which indicated that selective poly(A)-tail shortening primarily specifies these change
266 ncation of its 3' UTR, including loss of its polyA tail, stabilized Bip1 mRNA, resulting in increased
267 slation on transcripts containing or lacking poly(A) tails, suggesting that cleavage of PABP and IRES
273 re is a >30-fold increase of PAP I-dependent poly(A) tails that are </=10 nt in length coupled with a
274 translationally repressed mRNAs contain long poly(A) tails that are dramatically shortened during the
276 destabilizing codons tend to possess shorter poly(A)-tails, the poly(A)-tail is not required for the
278 t decapping is preceded by shortening of the poly(A) tail to a length that can no longer support tran
280 elements are linked to the propensity of the poly(A) tail to engage in double-stranded structures.
281 mRNA polyadenylation, the addition of a poly(A) tail to the 3'-end of pre-mRNA, is a process cri
285 ic acid (LNA)-containing oligo(dT) probes to poly(A) tails to maximize RNA capture selectivity and ef
288 l loop hybridizes with the 3'-polyadenylate (polyA) tail to sequester it from exonucleolytic attack.
290 polymerase, and the mRNA transcribed, with a poly(A) tail, was efficiently utilized in an in vitro tr
291 where the majority of the PAP I synthesized poly(A) tails were after the Rho-independent transcripti
292 regulated by RNAi in Chlamydomonas, very few poly(A) tails were detected in chloroplasts for the atpB
293 the number or sequence of mitochondrial mRNA poly(A) tails, where unexpectedly we found, in addition
295 cleases for pre-tRNA substrates adding short poly(A) tails, which not only modulate the stability of
296 EMT/metastasis-related mRNAs to have shorter poly(A) tails while other mRNAs to have longer poly(A) t
297 Orb2 represses translation and removes mRNA poly(A) tails, while the oligomeric form enhances transl
298 turely translated: a transcript with a short poly(A) tail will remain untranslated, whereas elongatin
299 nstrate that our tool can precisely identify poly(A) tails with near perfect accuracy at the speed re
300 onfirm that cordycepin reduces the length of poly(A) tails, with some mRNAs being much more sensitive