ライフサイエンスコーパス: polyadenylate

1 , are capped but, unlike host mRNAs, are not polyadenylated.

2 y cleavage by RNase P and are capped but not polyadenylated.

3 ense transcripts that were not capped and/or polyadenylated.

4 transcribed by RNA polymerase II but are not polyadenylated.

5 s are the only eukaryotic mRNAs that are not polyadenylated.

6 NAs are the only metazoan mRNAs that are not polyadenylated.

7 gation complexes are efficiently cleaved and polyadenylated.

8 lymerase I or III and are not believed to be polyadenylated.

9 3'UTR is unusually long and is alternatively polyadenylated.

10 verified that bound mRNA remained intact and polyadenylated.

11 ncreases in the number of mRNA isoforms with polyadenylated 3' ends that map to 5'-untranslated regio

12 Here we show that polyadenylated 3' termini in three yeast species (Saccha

13 ments for two yeast snoRNA genes also direct polyadenylated 3'-end formation in the context of an mRN

14 all si/miRNA-sized fragments, (ii) uncapped, polyadenylated 3-prime fragments that encode the conserv

15 g tPA is present in dendrites and is rapidly polyadenylated after glutamate stimulation.

16 Therefore, GLD-2/RNP-8 appears to polyadenylate and stabilize its target mRNAs.

17 t in anaphase of meiosis I and fail to fully polyadenylate and translate bicoid mRNA.

18 ut the day, some newly synthesized rRNAs are polyadenylated and degraded in the nucleus in a robustly

19 The ASFMR1 transcript is spliced, polyadenylated and exported to the cytoplasm.

20 es and an H3 gene that encode mRNAs that are polyadenylated and expressed at 5- to 10-fold lower leve

21 anscripts produced tend to be unspliced, non-polyadenylated and expressed at levels 10 to 100-fold lo

22 from the last (most telomeric) D4Z4 unit is polyadenylated and has two introns in its 3-prime untran

23 replication-dependent histone mRNAs are not polyadenylated and instead end in a conserved stem loop

24 The ORF-E transcript is polyadenylated and is expressed early when cultured bovi

25 ess, we examined >1 billion RNA-seq reads of polyadenylated and nonpolyadenylated RNA from differenti

26 mplex is involved in the 3' end formation of polyadenylated and nonpolyadenylated RNA polymerase II t

27 Sites of transcription of polyadenylated and nonpolyadenylated RNAs for 10 human c

28 been implicated in the transcription of both polyadenylated and nonpolyadenylated RNAs, Paf1C had not

29 ome an interleaved network of both annotated polyadenylated and nonpolyadenylated transcripts, includ

30 ep, multiple-stage reaction, where RNAs were polyadenylated and reverse-transcribed at the same time.

31 1 protein is downregulated while its mRNA is polyadenylated and stable.

32 cific RNA-seq to deeply profile lncRNAs from polyadenylated and total RNA obtained from human neocort

33 The m169 transcript is cytoplasmic, capped, polyadenylated, and interacts with miRNA-27 through seed

34 ng antisense RNA, asDOG1, that is 5' capped, polyadenylated, and relatively stable.

35 re-miRNAs) than pri-miRNAs that are cleaved, polyadenylated, and released.

36 howed that pc7 transcripts are expressed and polyadenylated, and that the PC7 precursor protein under

37 , to control the expression of alternatively polyadenylated antisense RNAs at the locus encoding the

38 The only eukaryotic mRNAs that are not polyadenylated are the replication-dependent histone mRN

39 es for PAP I in wild-type cells, are rapidly polyadenylated as PAP I levels increase, leading to dram

40 t of our knowledge, this description of both polyadenylated as well as nonpolyadenylated lncRNA trans

41 RNAs generated from upstream promoters were polyadenylated at (pA)p and hence not spliced.

42 The steady-state level of RNAs polyadenylated at (pA)p is independent of the promoter u

43 RNAs polyadenylated at (pA)p2 comprise approximately 10% of B

44 ncode the viral nonstructural proteins, were polyadenylated at a high efficiency at a polyadenylation

45 d from the upstream P7 and P19 promoters are polyadenylated at a site in the central intron ((pA)p);

46 s, primarily extended through (pA)p and were polyadenylated at a site, (pA)d, located at the right en

47 ng patterns are used, and each type is found polyadenylated at either the 3' end of the genome (the d

48 stranded positive-sense RNA molecule that is polyadenylated at its 3' end and covalently linked to a

49 They were polyadenylated at multiple sites within 3 kb downstream

50 that upstream antisense RNAs are cleaved and polyadenylated at poly(A) sites (PASs) shortly after ini

51 gonucleotide prevented B19V mRNA transcripts polyadenylated at the (pA)d site during B19V infection o

52 a sufficient number of B19V mRNA transcripts polyadenylated at the distal polyadenylation site ((pA)d

53 s generated by the proximal P41 promoter are polyadenylated at the distal polyadenylation site at the

54 d version of the full-length GP mRNA that is polyadenylated at the editing site and thus lacks a stop

55 Almost all eukaryotic mRNAs must be polyadenylated at their 3' ends to function in protein s

56 RNAs encoding histones are cleaved, but not polyadenylated at their 3' ends.

57 rst report to show that the highly expressed polyadenylated BamHI A rightward transcripts (BART) vira

58 ential regulatory properties of the spliced, polyadenylated BART RNAs, a full-length cDNA clone of on

59 The decay of 5' capped, polyadenylated bcl-2 mRNA transcripts containing ARE-1 w

60 The polyadenylate binding protein 1 (PABPN1) is a ubiquitous

61 nt ATX2 protein that does not associate with polyadenylate-binding protein (PABP) suppressed behavior

62 ells, we found diminished association of the polyadenylate-binding protein (PABP) with the cap-bindin

63 n active eIF4F complex bound to the cellular polyadenylate-binding protein (PABP).

64 x with TYF and promoted its interaction with polyadenylate-binding protein (PABP).

65 ), guanine nucleotide binding protein 3, and polyadenylate-binding protein 1 (PABP-1).

66 e methylation of histone (H3) or nonhistone (polyadenylate-binding protein 1, PABP1) substrates induc

67 search for proteins interacting with hEndoV, polyadenylate-binding protein C1 (PABPC1) was identified

68 Polyadenylate-binding protein cytoplasmic 1 (PABPC1) is

69 buildup of translational repressors, such as polyadenylate-binding protein interacting protein 2 (Pai

70 short abnormal polyalanine expansion in the polyadenylate-binding protein nuclear-1 (PABPN1) protein

71 The capacity of polyadenylate-binding protein PABPC1 (PABP1) to stimulat

72 In metazoans, histone mRNAs are not polyadenylated but end in a conserved stem-loop.

73 istone mRNAs are the only mRNAs that are not polyadenylated but instead end in a stem-loop which has

74 -responsive gene), which is both spliced and polyadenylated but is strictly localized in nuclei.

75 sequences present in BIC RNA, a spliced and polyadenylated but non-protein-coding RNA that accumulat

76 recently that sno-lncRNAs are not capped or polyadenylated but rather are terminated on each end by

77 ammalian mRNAs because they are not normally polyadenylated but, rather, are cleaved following a 3' s

78 ackaged into complete ribosomal subunits are polyadenylated by the poly(A) polymerase PAPD5 and degra

79 hat the nuclear-restricted pre-ribosomes are polyadenylated by TRAMP and degraded by the exosome.

80 The noncoding RNAs were polyadenylated, capped, and chromatin associated.

81 lated effectively in the presence of capped, polyadenylated cellular mRNAs is unknown.

82 NA metabolism events, we identify non-coding polyadenylated cis natural antisense transcripts (cis-NA

83 roteins produce mRNAs that, instead of being polyadenylated, contain a unique 3' end structure.

84 in the 3' long terminal repeat (LTR) was not polyadenylated detectably in vitro; however, if the tran

85 However, when capped and polyadenylated dicistronic RNAs were synthesized in vitr

86 the isoforms fulfill different functions or polyadenylate distinct subsets of pre-mRNAs.

87 protein isoform produced from the proximally polyadenylated DOG1 mRNA is a key player in the establis

88 ut the mechanisms by which these genomes are polyadenylated during viral replication remain obscure.

89 structure and transcription of D4Z4-encoded polyadenylated DUX4 mRNA in muscle.

90 ation reactions has no effect on turnover of polyadenylated edited RNA.

91 As contain no introns, and the mRNAs are not polyadenylated, ending instead in a conserved stem-loop

92 only eukaryotic cellular mRNAs that are not polyadenylated, ending instead in a conserved stem-loop.

93 ng to determine the precise 5'-capped and 3'-polyadenylated ends of postreplicative RNAs.

94 , yielding a comprehensive atlas of 62,000 polyadenylated ends.

95 Using rG4-seq on polyadenylated-enriched HeLa RNA, we generated a global

96 We investigated how the long, polyadenylated Evf2 noncoding RNA regulates transcriptio

97 svirus produces a 1077 nucleotide noncoding, polyadenylated, exclusively nuclear RNA called PAN that

98 f 44 microRNAs (miRNAs), and the spliced and polyadenylated exons form nuclear non-protein-coding RNA

99 vation of the functional short alternatively polyadenylated form of the DOG1 mRNA.

100 f products was shifted to favor the distally polyadenylated form.

101 ipt, which attenuates the degradation of the polyadenylated form.

102 Polyadenylated forms of the 27S pre-rRNA and the 25S rRN

103 essing of the major pri-miR171a, spliced and polyadenylated forms of which accumulate in plants homoz

104 und that the drug causes the accumulation of polyadenylated fragments of the 27S rRNA precursor and t

105 ression of pre-mRNAs prematurely cleaved and polyadenylated from cryptic polyadenylation signals (PAS

106 was established for quantitative analysis of polyadenylated full-length (fl) and truncated (tr) HBV R

107 Interestingly, GppppA-capped and polyadenylated full-length mRNAs were also found to be s

108 omplex required for production of proximally polyadenylated functional DOG1 transcript.

109 substantial posttranscriptional increase in polyadenylated GAL1 3' ends.

110 The polyadenylated H3.1 mRNA induced by arsenic was not susc

111 lular mRNA, translation of the uncapped, non-polyadenylated hepatitis C virus (HCV) genome occurs ind

112 results in accumulation of small amounts of polyadenylated histone mRNA and nascent read-through tra

113 There are also genes encoding polyadenylated histone mRNAs, which encode histone varia

114 f 7SK led to an enhanced ratio of cleaved to polyadenylated histone transcripts, an effect dependent

115 s2 depletion, concurrent with an increase in polyadenylated histone transcripts.

116 Processive, polyadenylated HIV-1 mRNAs were also present at a low le

117 the question of how viral RNA is efficiently polyadenylated in the absence of splicing.

118 Most eukaryotic mRNAs are polyadenylated in the nucleus, and the poly(A)-tail is r

119 ranscripts encoding the capsid proteins were polyadenylated in the right-hand terminal palindrome.

120 t approximately 85% of viral transcripts are polyadenylated in vivo.

121 A-less promoters and are neither spliced nor polyadenylated; instead, 3' processing is directed by a

122 aordinary diversity of correctly spliced and polyadenylated intergenic transcripts.

123 ong the intervening DNA, synthesizing short, polyadenylated, intergenic RNAs to ultimately loop with

124 prise approximately 10% of B19 RNAs that are polyadenylated internally.

125 e Expression) sequencing to globally resolve polyadenylated isoform structures in replicating Epstein

126 lncRHOXF1 is a spliced and polyadenylated lncRNA about 1 kb in length that is found

127 ockd (lncRNA downstream of Cdkn1b), a 434-nt polyadenylated lncRNA originating 4 kb 3' to the Cdkn1b

128 Analysis of the mouse erythro-megakaryocytic polyadenylated lncRNA transcriptome indicates that ~75%

129 We used RNA sequencing to identify 1109 polyadenylated lncRNAs expressed in erythroblasts, megak

130 et and another Alu element in a cytoplasmic, polyadenylated long non-coding RNA (lncRNA).

131 ion signal with sequences derived from a non-polyadenylated long non-coding RNA (MALAT1), which can f

132 Capped and polyadenylated long noncoding RNAs (lncRNAs) are shown t

133 Polyadenylated mature mRNAs are the focus of standard tr

134 sed on elevated affinity interaction between polyadenylated miRNA and bare gold electrode.

135 responses together with increased levels of polyadenylated mitochondrial transcripts.

136 xon 2 resulting in the production of a small polyadenylated mRNA (HTTexon1) that encodes the highly p

137 of target mRNAs produce diagnostic uncapped, polyadenylated mRNA fragments.

138 We demonstrate that hos1 mutants accumulate polyadenylated mRNA in the nucleus and that the circadia

139 adaptors that flag alternatively spliced and polyadenylated mRNA isoforms as cargo ready for the cyto

140 roteins (sFlt1s) produced from alternatively polyadenylated mRNA isoforms.

141 otein factors necessary for 3' processing of polyadenylated mRNA precursors are well known.

142 he oligo(dT)-primed reverse transcription of polyadenylated mRNA templates used to generate EST cDNA

143 its exact complement (the antigenome), and a polyadenylated mRNA that acts as a template for the smal

144 principally to a genomic region producing a polyadenylated mRNA that encodes a protein.

145 nt splicing of exon 1 HTT results in a short polyadenylated mRNA that is translated into an exon 1 HT

146 ated in vitro and also when m(7)G-capped and polyadenylated mRNA was transiently transfected into 293

147 ion factors, mRNA binding proteins, and most polyadenylated mRNA.

148 SG-PB docking, and impaired preservation of polyadenylated mRNA.

149 nscription factors, and enzymes that cap and polyadenylate mRNAs within the cytoplasm of infected ani

150 Polyadenylated mRNAs and replication-dependent histone m

151 mplexes-one specifically crafted to generate polyadenylated mRNAs and the other to generate nonpolyad

152 requires shortened/no poly(A)-tail targets; polyadenylated mRNAs are partially activated upon PAIP2

153 During heat shock, most polyadenylated mRNAs are retained in the nucleus, wherea

154 Together, these results suggest that polyadenylated mRNAs can enter P-bodies, and an mRNP com

155 d of the genome followed by 5'-capped and 3'-polyadenylated mRNAs from internal genes by a stop-start

156 They are expressed as polyadenylated mRNAs in fibroblasts differentiated in vi

157 of this system, including the prevalence of polyadenylated mRNAs in the bacterium, are still poorly

158 Transcription termination for genes encoding polyadenylated mRNAs requires a functional poly(A) signa

159 erminal portion of DUX4 and (iii) capped and polyadenylated mRNAs that contain the double-homeobox do

160 Polyadenylated mRNAs were captured by oligo-dT primers a

161 s the genomic RNA to produce five capped and polyadenylated mRNAs with the 5'-terminal structure 7mGp

162 Since PABP1 binds to all polyadenylated mRNAs, and is involved in translation ini

163 PABPC1 antagonizes uridylation of polyadenylated mRNAs, contributing to the specificity fo

164 ssed in terminally differentiated tissues as polyadenylated mRNAs, likely serving as replacement hist

165 eta-lactamase family generate the 3' ends of polyadenylated mRNAs, nonpolyadenylated histone mRNAs, a

166 n-independent histones, which are encoded by polyadenylated mRNAs, persists outside of S phase.

167 er half of human genes produce alternatively polyadenylated mRNAs, suggesting that regulated polyaden

168 , similar to the mechanism of translation of polyadenylated mRNAs.

169 ns two sets of histone genes that encode non-polyadenylated mRNAs.

170 etween 3' end formation of histone mRNAs and polyadenylated mRNAs.

171 istone genes that encode histone variants as polyadenylated mRNAs.

172 amyxoviruses produce capped, methylated, and polyadenylated mRNAs.

173 quently yielded an accumulation of shortened polyadenylated mtRNA species and impaired mitochondrial

174 These capped, polyadenylated ncRNAs are transcribed across the large i

175 PAP1, which is located in the nucleus, is to polyadenylate non-coding RNAs, which undergo trans-splic

176 The remainder associates with non-polyadenylated non-coding transcription.

177 s, 19.4, 43.7, and 36.9% were observed to be polyadenylated, nonpolyadenylated, and bimorphic, respec

178 t REF/Aly is recruited to the KSHV noncoding polyadenylated nuclear (PAN) RNA by ORF57.

179 osi's sarcoma-associated herpes virus (KSHV) polyadenylated nuclear (PAN) RNA facilitates lytic infec

180 Stability of the long noncoding-polyadenylated nuclear (PAN) RNA from Kaposi's sarcoma-a

181 ith a 9-nucleotide (nt) core element of KSHV polyadenylated nuclear (PAN) RNA, a viral long noncoding

182 es a highly abundant, nuclear noncoding RNA, polyadenylated nuclear (PAN) RNA, which contains an elem

183 tial for the nuclear accumulation of a viral polyadenylated nuclear (PAN) RNA.

184 Lytic KSHV expresses polyadenylated nuclear RNA (PAN RNA), a long noncoding R

185 t, long, noncoding transcript referred to as polyadenylated nuclear RNA (PAN RNA).

186 ma-associated herpesvirus (KSHV) expresses a polyadenylated nuclear RNA (PAN RNA).

187 , ORF59, K8alpha, K8.1, or a higher level of polyadenylated nuclear RNA after butyrate induction and

188 the Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA contains a 79-nt cis-acting e

189 monomeric red fluorescent protein 1 (mRFP1), polyadenylated nuclear RNA promoter (pPAN)-enhanced gree

190 the Kaposi's sarcoma-associated herpes virus polyadenylated nuclear RNA) are not efficiently processe

191 paired in activating direct targets, such as polyadenylated nuclear RNA, and indirect targets, such a

192 ranscriptome showed that several viral RNAs (polyadenylated nuclear RNA, open reading frame 58 [ORF58

193 which we named lncRNA-CMPK2, was a spliced, polyadenylated nuclear transcript that was induced by IF

194 bearing two C-G*C(H+) interrupts), and (3) a polyadenylated nuclear-nuclear retention element complex

195 130 kb upstream of miR-21, are spliced, and polyadenylated only a few hundred base pairs upstream of

196 Capped and polyadenylated ORF0 mRNAs are present in the cytoplasm,

197 Nuclear polyadenylated (poly(A)) RNA in ZC3H3-depleted cells is

198 ts and reconstituted exosomes using AU-rich, polyadenylated (poly[A]), generic, and structured RNA su

199 in bacterial RNA decay by binding tightly to polyadenylate [poly(A)] tracts.

200 tingly, nucleolin physically interacted with polyadenylate [poly(A)]-binding protein through it RGG m

201 in which we identify 72 factors required for polyadenylated [poly-(A(+))] mRNA export from the nucleu

202 U-rich internal loop hybridizes with the 3'-polyadenylate (polyA) tail to sequester it from exonucle

203 idopsis continues to suggest the presence of polyadenylated (polyA) transcripts originating from pres

204 Polyadenylate polymerase (PAP) catalyzes the synthesis o

205 Polyadenylate polymerase (PAP) catalyzes the synthesis o

206 MUT68 encodes a noncanonical polyadenylate polymerase that adds untemplated adenines

207 eviously undescribed prematurely cleaved and polyadenylated pre-mRNAs, some of which contain novel OR

208 or is required for processing of histone and polyadenylated pre-mRNAs.

209 dependent surveillance pathway that degrades polyadenylated precursor rRNAs.

210 as mRNAs, pre-mRNAs, or those RNAs that are polyadenylated prior to their degradation in the nucleus

211 found that human NLRP3 can be alternatively polyadenylated, producing a short 3'-UTR isoform that ex

212 rt that the yeast RPB2 gene is alternatively polyadenylated, producing two mRNAs with different lengt

213 d >28,000,000 signatures from the 5' ends of polyadenylated products of miRNA-mediated mRNA decay, is

214 BMP2 mRNAs are alternatively polyadenylated, resulting in mRNAs with distinct 3'-untr

215 We now demonstrate that Slr1 binds to polyadenylated RNA and that its intracellular localizati

216 rent biochemistries, with one examining only polyadenylated RNA and the other total RNA.

217 ogy from Pacific Biosciences to sequence the polyadenylated RNA complement of a pooled set of 20 huma

218 he viral genome is a single 7,400-nucleotide polyadenylated RNA encoding 11 proteins in a single open

219 Picornaviruses have 3' polyadenylated RNA genomes, but the mechanisms by which

220 entary DNA samples, reverse-transcribed from polyadenylated RNA obtained from human liver tissue.

221 Furthermore, a polyadenylated RNA of 1.4 kb was identified downstream o

222 A polyadenylated RNA of 3.0 kb (T3.0) is transcribed from

223 ination of nonpolyadenylated as well as some polyadenylated RNA polymerase II transcripts.

224 This transcription is observed in polyadenylated RNA samples and appears to be derived fro

225 ughput method for reliable identification of polyadenylated RNA termini, and we apply this method, ca

226 rine Upregulated Gene 1 (TUG1) is a spliced, polyadenylated RNA that does not encode any open reading

227 quantification of the full range of cellular polyadenylated RNA transcripts using a Helicos Genetic A

228 Because RBDmap relies on the isolation of polyadenylated RNA via oligo(dT), it will not provide RN

229 In addition, sar1 sar3 plants accumulate polyadenylated RNA within the nucleus, indicating that S

230 Following RNA extraction and isolation of polyadenylated RNA, a 5'-RNA adapter that includes an Mm

231 el approach to prepare 3' end fragments from polyadenylated RNA, and mapped the position of the poly(

232 trated that XTUT7 repressed translation of a polyadenylated RNA, to which it added a distinct number

233 Men epsilon is a 3.2-kb polyadenylated RNA, whereas Men beta is an approximately

234 onine serine repeat protein (Gts1p), nuclear polyadenylated RNA-binding protein 3, and minichromosome

235 We sequenced polyadenylated RNA-derived complementary DNAs from 92 ps

236 O2 into enlarged nuclear speckles containing polyadenylated RNA.

237 s that contain pre-mRNA splicing factors and polyadenylated RNA.

238 nscripts (BARTs) are the most abundant viral polyadenylated RNA.

239 y can be harnessed to identify alternatively polyadenylated RNA.

240 is required for the 3'-end processing of non-polyadenylated, RNAPII-dependent, uridylate-rich, small

241 of human PAPD1, a noncanonical PAP that can polyadenylate RNAs in the mitochondria (also known as mt

242 t hydroxymethylcytosine preferentially marks polyadenylated RNAs and is deposited by Tet in Drosophil

243 generation sequencing to analyze and compare polyadenylated RNAs from abortive MOCV infections of sev

244 associations of human nuclear and cytosolic polyadenylated RNAs longer than 200 nucleotides (nt) and

245 Non-coding non-polyadenylated RNAs were among the key Hox targets, with

246 number that gave rise to heterogeneous Trf4p-polyadenylated RNAs with lengths of approximately 250-50

247 toplasm after its nuclear export, to degrade polyadenylated RNAs, such as mRNAs, pre-mRNAs, or those

248 on of ORF59 RNA and RBM15's association with polyadenylated RNAs.

249 TRAMP polyadenylates RNAs designated for decay or trimming by

250 TRAMP polyadenylates RNAs designated for processing by the nuc

251 The levels of polyadenylated rRNAs are dramatically increased in strai

252 The existence of polyadenylated rRNAs may reflect a quality-control mecha

253 Polyadenylated rRNAs reside mainly within the nucleus an

254 ation-dependent histone mRNAs, which are not polyadenylated, share factors involved in 3' end formati

255 roborated by the finding that the proximally polyadenylated short DOG1 mRNA is translated in vivo and

256 observed transcript 3' end heterogeneity and polyadenylated small nucleolar RNAs.

257 and characterized methylguanosine-capped and polyadenylated small RNAs (CPA-sRNAs) by using different

258 s of the Arabidopsis thaliana transcriptome (polyadenylated, small, and degrading RNAs).

259 wild-type, pre-tRNA(i)(Met) accumulates as a polyadenylated species, whose abundance and length distr

260 how that genes are also flanked by sense, 3' polyadenylated sRNAs that are likely to be capped.

261 chet helix that influences Mtr4 affinity for polyadenylated substrates.

262 idues, which are distinct in length from the polyadenylate tail added to other plant RNAs for exosome

263 ap-defective polymerases lacked an authentic polyadenylate tail and instead contained 0 to 24 A resid

264 upting deadenylation with use of an internal polyadenylate tail did not block target repression.

265 CPF cleaves pre-mRNAs, adds a polyadenylate tail, and triggers transcription terminati

266 lymerase (PAP) catalyzes the synthesis of 3'-polyadenylate tails onto mRNA.

267 B mRNA terminates with an mRNA destabilizing polyadenylate tract, resulting in this strain being unab

268 of these clones corresponded to a capped and polyadenylated transcript containing a large portion of

269 An abundant, spliced, internally polyadenylated transcript encoded the viral NP1 protein

270 o examine murine gammaherpesvirus 68 (MHV68) polyadenylated transcript expression in a time course of

271 ed by a 28-nucleotide transcript and long 3'-polyadenylated transcript initiated with non-canonical G

272 miR-378* and thus renders the alternatively polyadenylated transcript insusceptible to miR-378*-medi

273 analyses of MeCP2 protein and alternatively polyadenylated transcript levels were performed by laser

274 PCR and mRNA-seq detect a single capped and polyadenylated transcript that encodes processed forms o

275 t 49% (human), 31% (mouse), and 28% (rat) of polyadenylated transcription units have alternative poly

276 to contribute only a small percentage of the polyadenylated transcriptome in some RNA-Seq experiments

277 RNA sequencing (RNA-seq) to characterize the polyadenylated transcriptomes of human and mouse platele

278 the ENE-controlled rapid-decay mechanism for polyadenylated transcripts comprises a nuclear pre-mRNA

279 Ratios of encapsidated readthrough and polyadenylated transcripts for vectors with wild-type an

280 RRP6 result in the accumulation of aberrant polyadenylated transcripts from small nucleolar RNA gene

281 Noncoding functions of such polyadenylated transcripts have been elucidated in only

282 hroughput sequencing targeting the 3' end of polyadenylated transcripts in archived tumors from 24 ad

283 served that intron retention is prevalent in polyadenylated transcripts in resting CD4(+) T cells and

284 Here, we show that intron-less polyadenylated transcripts such as PAN RNA and beta-glob

285 n species has identified genes encoding long polyadenylated transcripts that do not contain ORFs of l

286 ng element, the ENE, which allows intronless polyadenylated transcripts to accumulate to high nuclear

287 We curated polyadenylated transcripts with limited protein-coding c

288 me capture methods to identify RBPs bound to polyadenylated transcripts within the first 2 h of Droso

289 for high-throughput sequencing of 3' ends of polyadenylated transcripts, and used it to globally map

290 ers fundamentally from normal termination in polyadenylated transcripts, as it leads to transcript de

291 a method is described to concurrently remove polyadenylated transcripts, prokaryotic rRNA, and eukary

292 s greater than those for 98% of all cellular polyadenylated transcripts.

293 on of 17 distinct, likely non-protein-coding polyadenylated transcripts.

294 more abundant than the other introns within polyadenylated transcripts; we classified these as "deta

295 n non-translating mRNPs, and the presence of polyadenylated uncapped mRNA in mRNPs was confirmed by s

296 The 5' ends of polyadenylated, uncapped mRNAs from Arabidopsis were dir

297 HuR mRNA exists as three alternatively polyadenylated variants, a 1.5-kb testes-specific mRNA i

298 he virally encoded poly(A) polymerase, which polyadenylates viral transcripts, also mediates 3' polya

299 ding P19-generated transcripts are primarily polyadenylated within the central intron and not efficie

300 f Ty1 cDNA to prime reverse transcription of polyadenylated Y' RNA within Ty1 VLPs.