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1 itive and negative regulators of alternative polyadenylation.
2 BM1 expression by promoting IBM1 mRNA distal polyadenylation.
3 ugh alternative transcription, splicing, and polyadenylation.
4 (UTRs) generated by alternative cleavage and polyadenylation.
5 eb1 cotranscriptionally controls alternative polyadenylation.
6 s, DOG1 transcript is subject to alternative polyadenylation.
7 expected role for hnRNP A2/B1 in alternative polyadenylation.
8 through alternative splicing and alternative polyadenylation.
9 th as a consequence of increased alternative polyadenylation.
10 ed widespread alternative trans-splicing and polyadenylation.
11 , independently of its effect on alternative polyadenylation.
12 ron excision events that follow cleavage and polyadenylation.
13 nscriptional, some introns are excised after polyadenylation.
14 in mediating PAS-dependent RNA cleavage and polyadenylation.
15 MeCP2 dysregulation via altered alternative polyadenylation.
16 ative splicing, and alternative cleavage and polyadenylation.
17 demarcate sites of alternative splicing and polyadenylation.
18 sion of these genes by promoting mRNA distal polyadenylation.
19 RNA binding proteins, or during alternative polyadenylation.
20 g RNAs (lncRNAs), undergo trans-splicing and polyadenylation.
21 ed from the unc-44 locus through alternative polyadenylation.
22 onses relative to its interactions with mRNA polyadenylation.
23 oding RNAs, which undergo trans-splicing and polyadenylation.
25 e protein isoform produced through premature polyadenylation aberrantly localizes to the plasma membr
26 identify prominent alternative splicing and polyadenylation abnormalities in infant CDM muscle, and,
27 CR-III has been linked to polymerase and polyadenylation activity, CR-V to mRNA capping and CR-VI
28 d for poly(A) polymerase I (PAP I)-dependent polyadenylation after Rho-independent transcription term
30 iral capsid gene via its role in alternative polyadenylation and alternative splicing of the single M
32 ha regulated PAP (Star-PAP) controls E6 mRNA polyadenylation and expression and modulates wild-type p
35 ions involving RNase R treatment followed by Polyadenylation and poly(A)+ RNA Depletion (RPAD), which
41 he de novo synthesis of this subunit whereas polyadenylation and translation of cyb mRNA were unaffec
43 between alternative splicing and alternative polyadenylation, and it is their concerted actions that
49 ve alternative splicing (AS) and alternative polyadenylation (APA) defects in the cerebellum of c9ALS
60 (PASs), leading to expression of alternative polyadenylation (APA) isoforms with distinct functions.
62 n one PAS, which can produce the alternative polyadenylation (APA) phenomenon and affect the stabilit
64 (PAT) sequencing approach, mRNA alternative polyadenylation (APA) profiles after auxin treatment wer
65 action landscape and changed the alternative polyadenylation (APA) profiles and/or transcript levels
66 inhibited by its 3'UTR, and that alternative polyadenylation (APA) results in the production of ECE-1
67 differences in the use of tandem alternative polyadenylation (APA) sites by methylated and nonmethyla
69 tening of messenger RNAs through alternative polyadenylation (APA) that occurs during enhanced cellul
70 of human genes use alternative cleavage and polyadenylation (ApA) to generate messenger RNA transcri
71 port exhibited mostly changes in alternative polyadenylation (APA), cell cycle genes showed mostly al
73 udes comprehensive assessment of alternative polyadenylation (APA), which is subject to broad tissue-
76 , suggesting that coupling of Musashi to the polyadenylation apparatus is a conserved mechanism to pr
77 occur in the nucleus-capping, splicing, and polyadenylation-are mechanistically linked to the proces
78 secondary structure at sites of alternative polyadenylation, as well as strong secondary structure a
79 we observed no general shift in alternative polyadenylation associated with PE, the EO-PE and LO-PE
83 lice sites and poly(A) signals were mutated, polyadenylation became the preferred mode of OXT6 proces
84 tes intron excision in the context of 3'-end polyadenylation but not when bound to internal A-tracts.
87 that Pcf11, a component of the cleavage and polyadenylation complex (CPAC), is also generally requir
92 e exosome cofactor TRAMP (Trf4/5-Air1/2-Mtr4 polyadenylation) complex, dMtr4 and dZcchc7, as antivira
96 132) gene undergoes alternative cleavage and polyadenylation during transcription, giving rise to two
98 tified that the mRNA splicing of cytoplasmic polyadenylation element binding 2 (CPEB2), a translation
99 mouse mammary epithelial cells, cytoplasmic polyadenylation element binding protein 1 (CPEB1) mediat
105 tional regulation of VEGF by the cytoplasmic polyadenylation element-binding proteins CPEB1 and CPEB4
106 Both Orb and Orb2 bind linear cytoplasmic polyadenylation element-like sequences in the 3' UTRs of
108 dies have reported previously less-addressed polyadenylation events located in other parts of genes i
112 -containing RNA binding protein, kinetoplast polyadenylation factor 3 (KPAF3), and demonstrate its ro
113 th morpholino technology or silencing of the polyadenylation factor CPSF1 caused a splice switch that
114 ng a truncated form of the mRNA cleavage and polyadenylation factor CPSF6, the completion of HIV-1 ve
117 of this intronic PAS depends on the nuclear polyadenylation factor SYDN-1, which inhibits the RNA po
118 , our results implicate CstF64, an essential polyadenylation factor, as a master regulator of 3'-UTR
120 tone cleavage complex (HCC), and a subset of polyadenylation factors including the endonuclease CPSF7
122 yer regulatory mechanisms controlling fungal polyadenylation factors, which have profound implication
128 re-mRNA alternative splicing and alternative polyadenylation have been implicated to play important r
129 pmentally regulated alternative splicing and polyadenylation in congenital myotonic dystrophy (CDM).
131 Here, we describe that alternative intronic polyadenylation in intron 10 of the gp130 transcript res
134 ex and factors involved in mRNA splicing and polyadenylation, including an association of PAF1-C with
135 ly(A) polymerases that regulates cytoplasmic polyadenylation-induced translation, but its target mRNA
140 Processing of mRNA precursors (pre-mRNAs) by polyadenylation is an essential step in gene expression.
142 To assess the full panoply of mRNAs whose polyadenylation is controlled by GLD4, we performed an u
143 gene expression at the level of cytoplasmic polyadenylation is important for many biological phenome
145 and we found that the majority of them lacks polyadenylation, is resistant to RNase R digestion and l
147 I (CFI) proteins are core components of the polyadenylation machinery that can regulate several step
148 r to obtaining a structural blueprint of the polyadenylation machinery that explains both how this co
149 II termination via depletion of the cleavage/polyadenylation machinery, circular RNA levels were simi
151 We provide genome-wide, high-resolution polyadenylation maps of the human heart and show that th
153 hat are created on the mRNA level by a novel polyadenylation mechanism found only in Blastocystis.
154 t had not been clear how the potent internal polyadenylation motif is suppressed to allow processing,
155 s transcription elongation, termination, and polyadenylation, must also be considered as potential me
156 homozygous mutation resulted in the loss of polyadenylation of all mitochondrial transcripts assesse
158 bly, arsenic exposure dramatically increased polyadenylation of canonical histone H3.1 mRNA possibly
163 ctivity: a post-fertilisation wave involving polyadenylation of maternal transcripts; a broad wave of
164 tr3(Gt-ex13) gene trap insertion disturb the polyadenylation of MATR3 transcripts and alter Matrin 3
170 We show that Nudt21 directs differential polyadenylation of over 1,500 transcripts in cells acqui
172 contiguous location in the genome and shared polyadenylation of several of the ORF57-dependent genes,
174 The lack of PDE12 results in a spurious polyadenylation of the 3' ends of the mitochondrial (mt-
177 scriptome-wide analysis revealed alternative polyadenylation of thousands of genes, most of which res
178 overexpression of CPEB4 promoted cytoplasmic polyadenylation of VEGF messenger RNA, increasing its tr
181 pts would either have to undergo cytoplasmic polyadenylation or retain a reasonably long poly(A) tail
186 studies have revealed widespread alternative polyadenylation (polyA) in eukaryotes, leading to variou
187 ncluding the transcription activation (TAR), polyadenylation (PolyA), and primer binding (PBS) elemen
188 ew mechanism by which premature cleavage and polyadenylation (pPA) of RNA can produce an oncogenic pr
190 pression is regulated by the testis-specific polyadenylation protein CFIm25, which is downregulated i
194 t regulate alternative splicing, alternative polyadenylation, RNA stability and RNA localization.
195 s of dsDNA, ssRNA and dsRNA viral markers of polyadenylation-selected RNA sequences from microbial co
196 vidence that evolutionary divergence in core polyadenylation signal (PAS) and downstream sequence ele
197 his process is the recognition of the AAUAAA polyadenylation signal (PAS), and the molecular mechanis
198 e demonstrate that targeting either the mRNA polyadenylation signal and/or cleavage site is an effici
199 hexanucleotide AAUAAA motif in the pre-mRNA polyadenylation signal by the cleavage and polyadenylati
202 e development of new therapies targeting the polyadenylation signal in AR intron 3 as a strategy to p
204 ent genes, ORF57 regulation was promoter and polyadenylation signal independent, suggesting that the
205 pulohumeral muscular dystrophy-specific DUX4 polyadenylation signal is surprisingly inefficient, and
207 loaded onto polyribosomes and lack a strong polyadenylation signal, resulting in poor translation ef
211 rely cleaved and polyadenylated from cryptic polyadenylation signals (PAS) located in intron 1 or 2 o
213 ing theciselements that function as internal polyadenylation signals in the capsid protein-expressing
214 riptome-wide gene expression and alternative polyadenylation signatures associated with early-onset P
215 Here, we identify a key role for an intronic polyadenylation site (PAS) in temporal- and tissue-speci
216 anscription termination at a strong intronic polyadenylation site (PAS) in unc-44/ankyrin yet promote
218 n breakpoints (BPs) up to 896 kb 3' of SATB2 polyadenylation site cause a phenotype which is indistin
220 ption support PROMPT formation, but owing to polyadenylation site constraints, these transcripts tend
221 levated NUDT21 increases usage of the distal polyadenylation site in the MECP2 3' UTR, resulting in a
222 icular features at the 5' end and around the polyadenylation site indicate that this polymerase under
223 plicing and the read-through of the proximal polyadenylation site of the HBoV1 precursor mRNA, essent
225 unction in NNS-like termination but promotes polyadenylation site selection of coding and noncoding g
226 cy in parallel with defects in DOG1 proximal polyadenylation site selection, suggesting that the shor
228 molecule long-read sequencing technology and polyadenylation site sequencing (PAS-seq) to re-annotate
229 EF-RNA interactions upon RNA cleavage at the polyadenylation site triggers disassembly of the elongat
231 nscript 3' end shortening through changes in polyadenylation site usage occurs following T cell activ
233 intron immediately upstream of the internal polyadenylation site, (pA)p, and that generation of thes
234 cumulate RNA polymerases in proximity of the polyadenylation site, a trend that coincided with longer
235 h mouse and human MOR-1A and their conserved polyadenylation site, and defined the role the 3'-UTR in
236 pecificity to the SMN 3'-UTR adjacent to the polyadenylation site, independent of the U1 snRNP (U1 sm
237 serted into intron 35 exposes an alternative polyadenylation site, resulting in a truncated Pkhd1 tra
238 erves as a cryptic transcription termination/polyadenylation site, which rarely also functions to edi
245 tematically mapped and compared cleavage and polyadenylation sites (PASs) in two yeast species, S. ce
247 tage-specific preferential trans-splicing or polyadenylation sites and differentially expressed genes
248 st highly conserved motif in eukaryotic mRNA polyadenylation sites and, in mammals, is specifically r
250 u elements introduced new terminal exons and polyadenylation sites during human genome evolution.
253 3'-UTR of NRT1.1 showed that the pattern of polyadenylation sites was altered in the cpsf30 mutant.
254 criptional variants of Pdgfra with different polyadenylation sites, including an intronic variant tha
257 are commonly terminated early, influenced by polyadenylation sites, promoters often cluster so that t
258 ein ELAV inhibits RNA processing at proximal polyadenylation sites, thereby fostering the formation o
262 X2 and the truncated version of cleavage and polyadenylation specific factor 6 (CPSF6), as well as th
264 mRNA 3' end formation factors, cleavage and polyadenylation specificity factor (CPSF) and SYMPK, are
265 F100 is a core component of the cleavage and polyadenylation specificity factor (CPSF) complex for 3'
269 ng to the 30-kDa subunit of the cleavage and polyadenylation specificity factor (CPSF30), a cellular
270 (Cstf64) and 73-kDa subunit of cleavage and polyadenylation specificity factor (CPSF73), was reduced
272 decreasing its interaction with cleavage and polyadenylation specificity factor 30 (CPSF30), leading
274 nt whose mutation mapped to the Cleavage and Polyadenylation Specificity Factor 30 gene (CPSF30-L).
275 impair its interaction with the cleavage and polyadenylation specificity factor 6 (CPSF6) and its abi
277 another capsid binding protein, cleavage and polyadenylation specificity factor 6 (CPSF6), has not be
278 t of this complex is likely the cleavage and polyadenylation specificity factor 73 kDa-I (CSPF73-I),
279 ncodes a homologue of mammalian cleavage and polyadenylation specificity factor subunit 3 (CPSF-73 or
282 utilising cyclophilin A (CypA), cleavage and polyadenylation specificity factor-6 (CPSF6), Nup358 and
286 cts of RNA structure on messenger RNA (mRNA) polyadenylation, splicing, translation, and turnover.
287 ny biological processes, including splicing, polyadenylation, stability, transportation, localization
289 sults in even greater levels of histone mRNA polyadenylation, suggesting that both CstF-64 and tauCst
290 sed via alternative splicing and alternative polyadenylation to generate at least 8 mRNA transcripts.
291 F3 and SRSF7 couple alternative splicing and polyadenylation to NXF1-mediated mRNA export, thereby co
292 sed via alternative splicing and alternative polyadenylation to produce at least 8 mRNA transcripts.
293 factors required for specific and efficient polyadenylation, to help coordinate mRNA 3'-end processi
294 clear exosome cofactor Trf4/5p-Air1/2p-Mtr4p polyadenylation (TRAMP) complex before subsequent nuclea
296 r of translation control through alternative polyadenylation usage required to fine-tune the timing o
298 rgely retained in the absence of cytoplasmic polyadenylation, which indicated that selective poly(A)-
299 mination of mRNAs is coupled to cleavage and polyadenylation while noncoding transcripts are terminat
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