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1 cid residues of the C subunit are modeled as polyalanine.
2 ues that resulted from a duplication of nine polyalanines.
3 greement with J-coupling constants for short polyalanines.
5 alpha-helices, and 3(10)-helices for capped polyalanines, acetyl(ala)(N)()NH(2), for values of N fro
6 free energy landscape coordinate of a mainly polyalanine alpha-helical peptide, AP of sequence AAAAA(
7 y terms that contribute to the transfer of a polyalanine alpha-helix from the aqueous phase into lipi
8 nscripts results in the accumulation of SCA8 polyalanine and DM1 polyglutamine expansion proteins in
10 ucidate the methodology using the folding of polyalanine, and demonstrate that its alpha-helix foldin
11 structs express homopolymeric polyglutamine, polyalanine, and polyserine proteins in the absence of a
12 shift anisotropies are intrinsic to helical polyalanines, and a correcting L-R-based model is introd
16 ous reports of conformational preferences in polyalanine-based peptides including (i) terminal 3(10)-
19 the study of two model systems, a 15-residue polyalanine chain and the R2-fragment ((273)GKVQIINKKLDL
23 by molecular replacement using superimposed polyalanine coordinates of six intracellular lipid-bindi
24 ed between solubilizing lysine regions and a polyalanine core permit rigorous characterization of con
27 h), is a 21 bp in-frame duplication within a polyalanine-encoding region at the 5'-end of the Hoxd13
28 rent proteins with long polyglutamines and a polyalanine-expanded protein, and reduces their toxicity
30 how that this aggregate-prone protein with a polyalanine expansion can also protect against polygluta
31 phy (OPMD) is a late onset disease caused by polyalanine expansion in the poly(A) binding protein nuc
33 g binding to WT PHOX2B and a CCHS-associated polyalanine expansion mutant but only weakly or not at a
34 a late-onset muscular dystrophy caused by a polyalanine expansion mutation in the coding region of t
35 resented, each heterozygous for a documented polyalanine expansion mutation in the PHOX2B gene and ev
36 ed as an autosomal dominant disorder and the polyalanine expansion mutation is thought to confer a to
37 have the mildest of the CCHS-related PHOX2B polyalanine expansion mutations, coding for only five ex
41 , we investigated the effects of the longest polyalanine expansions on the homeodomain-mediated nucle
43 dystrophy (OPMD), a disorder caused by small polyalanine (GCG) expansions in the gene that codes for
44 conformations of protonated polyglycine and polyalanine (Gly(n)H and Ala(n)H+, n = 3-20) in the gas
45 Two configurations of a membrane-bound 25mer polyalanine helix were found to be lower in free energy
46 s of cysteines in three model systems: (a) a polyalanine helix, (b) the isolated C helix (residues 53
49 ast iso-1-cytochrome c variants that contain polyalanine inserts ranging from 6 to 30 residues in len
50 Here, we report FRET results on gas-phase polyalanine ions obtained by measuring FRET efficiency t
51 hase 3(10)-helices are more stable for small polyalanines, largely due to the additional H-bond, the
54 a variant that contains an eight-amino-acid polyalanine-like helix stabilised by a Glu-Arg salt brid
61 surements have been performed for protonated polyalanine peptides (A10 + H+, A15 + H+, A20 + H+, A25
62 n integrals for both the polyglycine and the polyalanine peptides are consistent with a self-solvated
64 charged anchor residue is so pronounced that polyalanine peptides containing a single Asp can bind to
66 s, recent NMR experiments suggest that short polyalanine peptides in water populate the polyproline I
70 polypeptide complexes (RNCs) with different polyalanine (poly-A) inserts or signal peptides from mem
75 t different classes of calibrants, including polyalanine (PolyAla), tetraalkylammonium salts (TAA), a
78 argeted to the antisense FMR polyproline and polyalanine proteins selectively stain nuclear and cytop
82 nonsense, and frameshift mutations, and 170 polyalanine repeat mutations were identified in 184 CCHS
84 CHS largely involve expansions of the second polyalanine repeat within the C-terminus of the protein,
87 otifs that strongly resemble the crystalline polyalanine-rich and amorphous glycine-rich regions of s
88 nd 60 degrees C in water for the solubilized polyalanine series Ac-Hel-A(n)-(t)LInp(2)K(4)W-NH(2) of
89 hands and feet, is caused by expansions of a polyalanine stretch in the amino-terminal region of HOXD
91 uence of the black widow MiSp1-like revealed polyalanine stretches interrupted by glycine residues an
93 tion of EGFP/proSP-C21 constructs containing polyalanine substitution for Glu11-Thr18, 13PPDY16, or 1
94 ic increases in basal ATPase activity, (iii) polyalanine substitution of a helical connector segment
96 eries of solubilized, spaced, highly helical polyalanines that are N-capped by the optimal helix stab
101 teins, exclude the direct involvement of the polyalanine tract in dimer formation, and indicate that
103 gene that results in an N-terminal expanded polyalanine tract in polyA-binding protein nuclear 1 (PA
106 7)] on the X chromosome, expanding the first polyalanine tract of the interneuron-specific transcript
107 ; in family 4, an expansion of an N-terminal polyalanine tract produces a similar phenotype; in famil
108 PMD is caused by the abnormal expansion of a polyalanine tract within the coding region of polyA bind
109 isease caused by the abnormal expansion of a polyalanine tract-encoding (GCG)(n) trinucleotide repeat
110 un; one domain resides within two N-terminal polyalanine tracts, and the other is present within the
112 ent kindreds were found to have an identical polyalanine triplet repeat expansion ([GCG](9)) in the P
113 ystrophy (OPMD) is a rare myopathy caused by polyalanine triplet repeat expansion in the gene for pol
114 basis for the similar behavior of loops with polyalanine versus polyglycine inserts is discussed in t
115 y sequence of ECP-2, but scattered blocks of polyalanine were present, along with a C terminus rich i
116 (JPH3), potentially encoding polyleucine and polyalanine, whereas on the strand antisense to JPH3, th
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