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1 assembly and the regulation of transcription preinitiation.
2 mapped movements of divalent cations during preinitiation.
3 initiation factor (eIF) 2 and eIF3, to form preinitiation 48S ribosomal complexes that subsequently
5 tion factors eIF1, eIF1A and eIF3 in the 40S preinitiation complex (40S.eIF1.eIF1A.eIF3.Met-tRNA(i).e
6 lity, the hydrolysis of GTP bound to the 40S preinitiation complex (40S.Met-tRNA(i).eIF2.GTP), promot
7 g eukaryotic translation initiation, the 43S preinitiation complex (43S PIC), consisting of the 40S r
9 omain (eIF5-CTD) directly links eIF4G to the preinitiation complex (PIC) and enhances mRNA binding.
10 of melted DNA separately associated with the preinitiation complex (PIC) and the adjacent paused comp
11 anslation initiation factor eIF1A stimulates preinitiation complex (PIC) assembly and scanning, but t
12 ription factor TFIIB plays a central role in preinitiation complex (PIC) assembly and the recruitment
13 SIR-mediated silencing is permissive to both preinitiation complex (PIC) assembly and transcription i
14 e GAL1 UAS, and facilitates formation of the preinitiation complex (PIC) assembly at the GAL1 promote
15 he steps leading to chromatin remodeling and preinitiation complex (PIC) assembly differ significantl
17 specific activator NF-E2 to the promoter and preinitiation complex (PIC) assembly occur only after di
18 (PRC1) inhibits activated RNA polymerase II preinitiation complex (PIC) assembly using immobilized H
19 FIIF are both required for RNA polymerase II preinitiation complex (PIC) assembly, but their roles at
20 he structure of transcription factors (TFs), Preinitiation Complex (PIC) assembly, RNA polymerase II
25 ies of highly regulated steps: assembly of a preinitiation complex (PIC) at the promoter nucleated by
26 s of highly regulated steps: assembly of the preinitiation complex (PIC) at the promoter, initiation,
27 vating protein complex, form a transcription preinitiation complex (PIC) at the spliced leader (SL) R
28 olving mRNA secondary structures that impede preinitiation complex (PIC) attachment to mRNA or scanni
30 defective for interaction with polymerase II preinitiation complex (PIC) components and other regulat
31 The resulting complete pol II transcription preinitiation complex (PIC) contained equimolar amounts
32 steps in transcription initiation including preinitiation complex (PIC) formation and start site sel
33 ans is regulated in several steps, including preinitiation complex (PIC) formation, initiation, Pol I
35 s p53-dependent transcription by stimulating preinitiation complex (PIC) formation; (2) H3K4me3, thro
36 scription commences with the assembly of the Preinitiation Complex (PIC) from a plethora of proteins
37 work implicated eIF5 in rearrangement of the preinitiation complex (PIC) from an open, scanning confo
39 complexes remove the -1 nucleosome after the preinitiation complex (PIC) has partially assembled, but
40 ferences of the key components of eukaryotic preinitiation complex (PIC) have been recently measured
41 promoting ATP-dependent dissociation of the preinitiation complex (PIC) into the Scaffold complex.
42 don in an mRNA by the eukaryotic translation preinitiation complex (PIC) is essential for proper gene
44 1), eIF1A, eIF3, and eIF5, and the resulting preinitiation complex (PIC) joins the 5' end of mRNA pre
46 that a reduced affinity of eIF3j for the 43S preinitiation complex (PIC) occurs on eIF4F-dependent mR
49 oactivators are required for assembly of the preinitiation complex (PIC) or for subsequent steps in t
50 ires the assembly at the promoter of a large preinitiation complex (PIC) that includes RNA polymerase
51 inately recruit RNA polymerase II and form a preinitiation complex (PIC) to activate MyoD transcripti
52 as been implicated in attachment of the 43 S preinitiation complex (PIC) to mRNAs and scanning to the
53 ve reconstituted mRNA recruitment to the 43S preinitiation complex (PIC) using purified S. cerevisiae
54 e of a 33-protein, 1.5-MDa RNA polymerase II preinitiation complex (PIC) was determined by cryo-EM an
55 onents of a large RNA polymerase II (Pol II) preinitiation complex (PIC) were distinguished from a ba
56 nucleates the assembly of the transcription preinitiation complex (PIC), and although TBP can bind p
57 x and its role, along with components of the preinitiation complex (PIC), in histone eviction at indu
59 formation and function of the promoter-bound preinitiation complex (PIC), which consists of RNA polym
65 ption factors and promoter DNA in a 'closed' preinitiation complex (PIC); unwinding of about 15 base
66 tiation of DNA synthesis from each origin, a preinitiation complex (pre-IC) containing Cdc45 and othe
67 and a core component of the DNA replication preinitiation complex (pre-IC), and that the TICRR-TopBP
68 scription by blocking the recruitment of the preinitiation complex (RNA polymerase II and TFIIB) to t
69 oter recruitment of poised RNA polymerase II preinitiation complex (RNAPII PIC), which enhances futur
70 s that a structural rearrangement in the 43S preinitiation complex activates it to become fully compe
73 c1Delta mutation affects the assembly of the preinitiation complex after osmotic shock, it does not a
74 kinetic dissection of the transition from a preinitiation complex after start codon recognition to t
77 f mRNA and stimulates recruitment of the 43S preinitiation complex and subsequent scanning to the ini
78 anding the architecture of the mammalian 43S preinitiation complex and the complex of eIF3, 40S, and
79 4me3 that leads to assembly of transcription preinitiation complex and transcriptional activation.
80 , for Mediator-dependent assembly of a basal preinitiation complex and, more important, identify a st
81 core promoter of RNR3 is sufficient to drive preinitiation complex assembly and activate transcriptio
82 0S binding of eIF3 and is needed for optimal preinitiation complex assembly and AUG recognition in vi
84 ontrol global gene expression in eukaryotes: preinitiation complex assembly and polymerase pausing.
85 re, a TFIIB-related protein is implicated in preinitiation complex assembly and postpolymerase recrui
86 ations of these results for the mechanism of preinitiation complex assembly and promoter melting.
87 y by the activator Gcn4p but is dependent on preinitiation complex assembly and Ser5 carboxy-terminal
88 oter chromatin remodeling from transcription preinitiation complex assembly and suggest the existence
89 sis coupled with native gel electrophoresis, preinitiation complex assembly assays, and translation i
90 8p and H3-K4 methylation are dispensable for preinitiation complex assembly at the core promoters of
92 inct mechanisms for ribosome recruitment and preinitiation complex assembly between the two processes
93 can be used to learn how different modes of preinitiation complex assembly impact transcriptional ac
94 IIB derivative is able to support high order preinitiation complex assembly in the absence of an acti
96 required for activators to stimulate Pol II preinitiation complex assembly on an associated promoter
97 with the MED23 Mediator subunit, stimulating preinitiation complex assembly on early viral promoters
98 om the TAF1-TFIID complex upon completion of preinitiation complex assembly, allowing transcription t
100 t Mdm30p is dispensable for formation of the preinitiation complex assembly, association of elongatin
101 inhibiting an essential function of TFIIF in preinitiation complex assembly, but also that Mediator c
111 Consistent with this finding, Mediator and preinitiation complex association with SAGA-dependent pr
112 e present a cryoEM reconstruction of a yeast preinitiation complex at 4.0 A resolution with initiator
113 on network is essential for formation of the preinitiation complex at the core promoter to initiate t
114 olymerase II, nucleating the assembly of the preinitiation complex at the transcription start site.
115 ation of most eukaryotic mRNAs occurs when a preinitiation complex binds to the 5' cap, scans the mRN
116 s bind immediately downstream of the Pol III preinitiation complex but are not required for Pol III r
117 ire the preloading of RNA polymerase II or a preinitiation complex but instead depends upon the Gcn5
118 of eIF1 was identified, interfaces to other preinitiation complex components and their relevance to
119 caffold for the dynamic associations of many preinitiation complex components, including the growth-r
120 et out to fine-map a small viral replication preinitiation complex composed of two protein dimers bou
121 e of mediating assembly of the transcription preinitiation complex containing RNA polymerase II.
122 iation in Archaea requires the assembly of a preinitiation complex containing the TATA- box binding p
124 gly, the initiation codon recognition by 43S preinitiation complex during EXT2 translation is suppres
127 IID (TFIID), which nucleates assembly of the preinitiation complex for transcription by RNA polymeras
128 reagents, their effect on transcription and preinitiation complex formation and discuss their potent
129 ter escape are linked to stronger effects on preinitiation complex formation and transcription, sugge
131 omote dephosphorylation of Ser5 to stimulate preinitiation complex formation and, later, to inhibit e
133 associated factors (TAFs), is essential for preinitiation complex formation at ribosomal RNA gene pr
134 rved cis elements, the TFIID complex directs preinitiation complex formation at specific sites in cor
135 e context-dependent Saccharomyces cerevisiae preinitiation complex formation at the HIS4 promoter rec
136 egative regulation of transcription, correct preinitiation complex formation in basal and activated t
137 Furthermore, Tup1 repressed RNR3 and blocked preinitiation complex formation in the Deltaisw2 mutant,
139 opose a model of stochastic enhanceosome and preinitiation complex formation that incorporates transc
140 anning sequences downstream from the site of preinitiation complex formation, a process that involves
141 ARG1 is independent of the TATA element and preinitiation complex formation, whereas efficient recru
150 SNF affects recruitment of components of the preinitiation complex in a promoter-specific manner to m
152 onal changes that mark the transition of 30S preinitiation complex into elongation competent 70S comp
153 n by BRCA1 is that the ubiquitination of the preinitiation complex is not targeting proteins for degr
154 se that the overall structure of the RNAP II preinitiation complex is similar in all eukaryotes and i
156 lating the assembly of the 48S translational preinitiation complex mediated by the p27 IRES element.
157 d the AdMLP suggests that Rep78/68 alter the preinitiation complex of RNA polymerase II transcription
158 ation of mda-7/IL-24 mRNA, activation of the preinitiation complex of the translational machinery in
160 cription by interfering with assembly of the preinitiation complex or by blocking transcription initi
161 regulate later stages in the assembly of the preinitiation complex or facilitate multiple rounds of p
162 he involvement of MED25 for fully functional preinitiation complex recruitment and transcriptional ou
163 nd eIF1A promote an open, scanning-competent preinitiation complex that closes upon start codon recog
164 rred, and the activators recruited a partial preinitiation complex that included RNA polymerase II.
165 slation initiation in eukaryotes occurs in a preinitiation complex that includes small ribosomal subu
166 dues of eIF1 disrupts a critical link to the preinitiation complex that suppresses eIF1 release befor
167 information for the papillomavirus E1E2-ori preinitiation complex that would otherwise have been har
168 .eIF2.GTP) and the subsequent binding of the preinitiation complex to eIF4F bound at the 5'-cap struc
170 is a central component of the transcription preinitiation complex, and its occupancy at a promoter i
171 binding to Adr1 at promoters that contain a preinitiation complex, demonstrating that Bmh-mediated i
173 initiation involves the assembly of the 48S preinitiation complex, followed by joining of the 60S ri
174 neral transcription factors that make up the preinitiation complex, including Pol II, but there was n
176 roteins, but not the conventional autophagic preinitiation complex, or adaptor protein-3 (AP-3).
178 s impair the integrity of scanning-competent preinitiation complex, thereby altering the 40 S subunit
179 e the interaction with the components of the preinitiation complex, thereby inhibiting its function a
180 method to analyze a yeast RNA polymerase II preinitiation complex, we identified a new 8-kDa protein
181 of EIF1AX, a component of the translational preinitiation complex, were markedly enriched in PDTCs a
182 lymerase II (Pol II) with the promoter-bound preinitiation complex, whereas Brf1 and Brf2 are involve
183 ly bind to the 40S subunit, yielding the 43S preinitiation complex, which is ready to attach to messe
221 ge number of promoters assemble into partial preinitiation complexes (partial PICs), containing TFIIA
222 if32 CTD that impair mRNA recruitment by 43S preinitiation complexes (PICs) and confer phenotypes ind
223 o determine how Mot1 affects the assembly of preinitiation complexes (PICs) at Mot1-controlled promot
224 manner suggesting incomplete assembly of 48S preinitiation complexes (PICs) at upstream AUG codons in
225 bly of RNA polymerase (Pol) II transcription preinitiation complexes (PICs) have been well establishe
226 eomic analysis of RNA polymerase II (RNApII) preinitiation complexes (PICs) identified Sub1 and the r
228 The accumulation of stalled translation preinitiation complexes (PICs) mediates the condensation
229 (MuDPIT) and immunoblot analyses of purified preinitiation complexes (PICs) revealed the recruitment
230 n by facilitating the recruitment of RNAP II preinitiation complexes (PICs) to the promoter regions o
231 face that is required for rapid formation of preinitiation complexes (PICs) was identified on the N-t
232 apid, TATA box-dependent assembly of RNAP II preinitiation complexes (PICs), but permits few rounds o
233 rprisingly, when Gdown1 is added to complete preinitiation complexes (PICs), it does not inhibit init
234 isolated that affect either the assembly of preinitiation complexes (PICs), scanning for AUG, or bot
235 ociation and P(i) release from reconstituted preinitiation complexes (PICs), whereas a hyperaccuracy
239 P1-NTD is required for efficient assembly of preinitiation complexes and also regulates the selection
240 3j/HCR1 remains associated with the scanning preinitiation complexes and does not dissociate from the
241 -a is a bona fide component of polymerase II preinitiation complexes and investigate its role in tran
242 ble binding of at least some mRNAs to native preinitiation complexes and that eIF4G has a rate-limiti
243 a model whereby BRCA1 stabilizes productive preinitiation complexes and thus stimulates transcriptio
245 hich is thought to stabilize properly formed preinitiation complexes at the correct start codon.
246 CDK8 module are specifically recruited into preinitiation complexes at the TR target gene type I dei
247 like unexpressed genes without transcription-preinitiation complexes at their promoters, expressed ge
248 rug influences the assembly and stability of preinitiation complexes by targeting the interaction bet
251 nslation initiation factor (eIF)3 enable 43S preinitiation complexes containing eIF3 and eIF2-GTP-Met
252 omoters, expressed genes or genes containing preinitiation complexes exhibit characteristic nucleosom
255 ng the formation of stable RNA polymerase II preinitiation complexes leading to transcription initiat
256 erentially affects the assembly of ribosomal preinitiation complexes on different cellular and viral
257 PSEA, DmSNAPc establishes RNA polymerase II preinitiation complexes on U1 to U5 promoters but RNA po
260 se TBP derivatives in isolated transcription preinitiation complexes or in living cells reveals physi
262 -depth characterization of RNA polymerase II preinitiation complexes remains an important and challen
263 oplasmic aggregates of stalled translational preinitiation complexes that accumulate during stress.
264 s granules (SGs) contain stalled translation preinitiation complexes that are assembled into discrete
265 /eIF2/GTP binds to 40S subunits yielding 43S preinitiation complexes that attach to the 5'-terminal r
266 n factors and Pol II to assemble on DNA into preinitiation complexes that can begin RNA synthesis upo
268 on codon selection and enables mammalian 43S preinitiation complexes to discriminate against AUG codo
269 with the presence of stalled 48S translation preinitiation complexes to persist throughout infection.
270 template assays in which activator-recruited preinitiation complexes were allowed to undergo one cycl
271 4 acidic activation domains in transcription preinitiation complexes were identified by site-specific
272 Initiation involves direct attachment of 43S preinitiation complexes within a short window at or imme
273 that nucleates the assembly of transcription preinitiation complexes, also independently interacts wi
275 use the proteasome to target transcriptional preinitiation complexes, thus minimizing transcriptional
276 ted to stimulate attachment of 43S ribosomal preinitiation complexes, which then scan to the initiati
293 sozyme does not inhibit the formation of the preinitiation open complex (open complex in the absence
295 ation with helper mRNAs allowed us to create preinitiation RNA replication complexes containing RNA t
296 of negative- and positive-strand RNAs within preinitiation RNA replication complexes, we found that m
298 These structures refine the pathway from preinitiation through initiation to elongation for the R
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