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1 oviding a novel method based on a parametric probabilistic model.
2 didates are scored and ranked using a simple probabilistic model.
3 et of pairing probabilities with a posterior probabilistic model.
4 nted using statistical inference in a single probabilistic model.
5 M, or any other model, with respect to three probabilistic models.
6 ge is the development of stable and accurate probabilistic models.
7 transcription factor binding sites based on probabilistic models.
8 n factors are most commonly represented with probabilistic models.
9 olecular genetics, stochastic simulation and probabilistic modelling.
12 , we developed the Stubb program that uses a probabilistic model and a maximum likelihood approach to
15 observed physical interactions into a simple probabilistic model and from it derive an interaction-me
17 e we improve this analysis by using a simple probabilistic model and the framework provided by scan s
19 thm based on supervised learning in flexible probabilistic models and find that it performs better th
20 te-of-the art molecular simulation, Bayesian probabilistic models, and high-throughput computation.
23 more use should be made of optimisation and probabilistic modelling approaches that have been succes
33 um probability models may supersede existing probabilistic models because they account for behaviour
35 val of gene expression experiments, we use a probabilistic model called product partition model, whic
37 finally suggest that inference for the full probabilistic model can be approximated with good perfor
43 semantics using Microsoft's GEC tool and the probabilistic model checker PRISM, demonstrating their a
48 To address this challenge, we present a new probabilistic model, DLCoal, that defines gene duplicati
51 We have integrated this measure with a new probabilistic model for beta-contact prediction, which i
52 Here, we present a generic method based on a probabilistic model for clustering this type of data, an
54 ities reported in HTS assays, we developed a probabilistic model for estimating cumulative exposure o
58 anscription Start sites Tracking Program), a probabilistic model for identifying active miRNA TSSs fr
60 ngle expression experiment, based on a joint probabilistic model for promoter sequence and gene expre
62 urrently missing from thesauri, we develop a probabilistic model for the construction of synonym term
64 the inferred discrete cell states to build a probabilistic model for the underlying gene regulatory n
69 in goal in this paper is to develop accurate probabilistic models for important functional regions in
70 work enables the construction of very useful probabilistic models for protein families that allow for
76 an process regression (GPR) is used to fit a probabilistic model from which replicates may then be dr
79 developments on computational side based on probabilistic modeling have shown promising direction to
80 oding of the chemical shift information in a probabilistic model in Markov chain Monte Carlo simulati
81 Examination of the accuracy of another indel probabilistic model in the light of our formulation indi
82 ty of the object are best accounted for by a probabilistic model in which the perceived boundary of t
88 ilarity, motifs, profiles, protein folds and probabilistic models - it is possible to develop charact
89 stallographic Map Interpreter), which uses a probabilistic model known as a Markov field to represent
90 oposed approach is based on a discriminative probabilistic model known as conditional random fields t
93 Dynamic Regulatory Events Miner (mirDREM), a probabilistic modeling method that uses input-output hid
96 Modeling is presented that creates a compact probabilistic model of a given target network, which can
99 tional priors in the context of a generative probabilistic model of ChIP data and genome sequence.
100 mportance sampling algorithm that combines a probabilistic model of DNA sequencing data with a enumer
102 ed the goodness-of-fit of each theory with a probabilistic model of exon/intron evolution and multipl
105 an attempt to improve the goodness of fit, a probabilistic model of late loss was created on the basi
106 ed by modifying miRDeep, which is based on a probabilistic model of miRNA biogenesis in animals, with
107 braries, we adapted miRDeep, which employs a probabilistic model of miRNA biogenesis, to analyze the
112 s, known collectively as Riptide, comprise a probabilistic model of peptide fragmentation chemistry.
115 ultiple alignment which couples a generative probabilistic model of sequence and structure with an ef
119 Our aim in this article is to develop a probabilistic model of the rearrangement process and a B
129 la chromatin states derived from data-driven probabilistic modelling of dependencies between chromati
130 mensional scaling, or using explicit spatial probabilistic models of allele frequency evolution.
131 ackground of other conserved sequences using probabilistic models of expected mutational patterns in
132 ations of human hematopoietic cells and used probabilistic models of gene expression and analysis of
133 ate that lateral gene transfers, detected by probabilistic models of genome evolution, can be used as
134 ling networks on a genome scale using unique probabilistic models of molecular interactions on a per-
136 ant problem is how to formulate and estimate probabilistic models of observed genotypes that account
137 roach also makes it possible to develop full probabilistic models of pseudoknotted structures to allo
138 important because it means we can build full probabilistic models of RNA secondary structure, includi
142 orary views propose that the brain maintains probabilistic models of the world to minimize surprise a
144 ing major surgery to develop a multivariable probabilistic model optimized for nonlinearity of serum
145 mosomal splicing, in individual reads, using probabilistic models or a database of known splice sites
146 e (Lipschitz) continuous with regards to the probabilistic modeling parameters, B) convergent metabol
156 human, mouse and Drosophila genes using 1017 probabilistic models representing over 600 different tra
158 ral vision, together with the development of probabilistic modeling techniques, have provided insight
161 ian process regression (GPR) combined with a probabilistic model that accounts for uncertainty about
164 e resulting from structural variants using a probabilistic model that combines multiple signals in ba
170 on of data SOurces using Networks), a formal probabilistic model that integrates background biologica
172 e we extend these approaches and construct a probabilistic model that not only compensates for motor
174 d validated the IMPACT-Better Ageing Model-a probabilistic model that tracks the population aged 35-1
176 modeling and flexible fitting; and 3) build probabilistic models that combine high-accuracy priors (
178 ngs, we propose the use of a single coherent probabilistic model, that encompasses much of the rich s
180 Ultimately, our results argue that for the probabilistic model there is indeed a statistical effect
181 model incorporates the read information in a probabilistic model through base quality scores within e
182 abilistic ANAlysis of genoMic dAta), a novel probabilistic model to account for confounding factors w
183 evised an efficient sampling method within a probabilistic model to achieve superior performance than
185 rom microarray/qRT-PCR platforms and a local probabilistic model to assign mapping results to the mos
188 oduce Mixture Model on Graphs (MMG), a novel probabilistic model to identify differentially expressed
190 c Map Interpreter), an algorithm that uses a probabilistic model to infer an accurate protein backbon
194 further smoothed and post-processed using a probabilistic model to predict the most likely transitio
195 To this end, we have designed a Bayesian probabilistic model to predict the probability of dichot
202 and wave simulations are combined with novel probabilistic models to quantify the likelihood of rogue
203 Of interest in this article, is the use of probabilistic modelling tools with which parameters and
204 ctive motifs with a positional preference, a probabilistic model (used reasonably) generally provides
210 s and maximum likelihood estimation of three probabilistic models was used to automatically construct
214 th paired read and read depth signals into a probabilistic model which can analyze multiple alignment
215 ome these problems we developed a generative probabilistic model which identifies a (small) subset of
216 Here we use this principle to construct probabilistic models which describe the correlated spiki
217 g-linear models (CLLMs), a flexible class of probabilistic models which generalize upon SCFGs by usin
221 omes from combining well structured Bayesian probabilistic modeling with a multi-faceted Markov Chain
223 he presence of variable information requires probabilistic models, yet it is unclear whether animals
224 lly from single-cell swimming behavior using probabilistic models, yet the mechanistic foundations of
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