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1 oviding a novel method based on a parametric probabilistic model.
2 didates are scored and ranked using a simple probabilistic model.
3 et of pairing probabilities with a posterior probabilistic model.
4 nted using statistical inference in a single probabilistic model.
5 M, or any other model, with respect to three probabilistic models.
6 ge is the development of stable and accurate probabilistic models.
7  transcription factor binding sites based on probabilistic models.
8 n factors are most commonly represented with probabilistic models.
9 olecular genetics, stochastic simulation and probabilistic modelling.
10                          The second involves probabilistic models, also known as splicing codes, whic
11                                              Probabilistic model analyses were performed to predict t
12 , we developed the Stubb program that uses a probabilistic model and a maximum likelihood approach to
13                         We develop a general probabilistic model and an associated inference algorith
14                   We combine a comprehensive probabilistic model and an extended data set, including
15 observed physical interactions into a simple probabilistic model and from it derive an interaction-me
16                           ECHO is based on a probabilistic model and is able to assign a quality scor
17 e we improve this analysis by using a simple probabilistic model and the framework provided by scan s
18                The mathematical framework of probabilistic models and Bayesian inference can describe
19 thm based on supervised learning in flexible probabilistic models and find that it performs better th
20 te-of-the art molecular simulation, Bayesian probabilistic models, and high-throughput computation.
21                     We formulate two general probabilistic models, and we propose computationally eff
22                                            A probabilistic modeling approach was used to assess the r
23  more use should be made of optimisation and probabilistic modelling approaches that have been succes
24                    Two novel features of our probabilistic model are: (i) correlations between bindin
25                              Recently, indel probabilistic models are mostly based on either hidden M
26                                    Generally probabilistic models are reasonably good approximations,
27                    We show how an elementary probabilistic model based on extreme value theory ration
28                                We describe a probabilistic model based on network clustering and asyn
29                                            A probabilistic model based on pseudo free energies obtain
30                                          The probabilistic model-based approach proposed here provide
31                            Here we propose a probabilistic model-based approach, Transcript Estimatio
32                                 The proposed probabilistic model-based synapse detector accepts molec
33 um probability models may supersede existing probabilistic models because they account for behaviour
34 ighest accuracy was achieved by the Bayesian probabilistic model (BRCAPRO).
35 val of gene expression experiments, we use a probabilistic model called product partition model, whic
36                            Here we propose a probabilistic model called target identification from pr
37  finally suggest that inference for the full probabilistic model can be approximated with good perfor
38              More importantly, the resulting probabilistic model can be directly used for homology se
39                       We demonstrate how the probabilistic model can be used to estimate credibility
40                             Here we show how probabilistic modeling can provide a platform for the qu
41                          We demonstrate that probabilistic models can be used to predict pharmacology
42                                   The use of probabilistic models can overcome this limitation.
43 semantics using Microsoft's GEC tool and the probabilistic model checker PRISM, demonstrating their a
44 ithms, and model properties calculated using probabilistic model checking.
45                              Phylo-grammars, probabilistic models combining Markov chain substitution
46                           Recently, a simple probabilistic model considering the role of strong seed-
47         In particular, we consider a general probabilistic model described in Siepel and Haussler tha
48  To address this challenge, we present a new probabilistic model, DLCoal, that defines gene duplicati
49 The central nervous system therefore employs probabilistic models during sensorimotor learning.
50                      Finally, we developed a probabilistic model for assigning spatial scores to matc
51   We have integrated this measure with a new probabilistic model for beta-contact prediction, which i
52 Here, we present a generic method based on a probabilistic model for clustering this type of data, an
53 and extend this solution to real data with a probabilistic model for errors.
54 ities reported in HTS assays, we developed a probabilistic model for estimating cumulative exposure o
55                               We developed a probabilistic model for estimating the value of membrane
56 sis allows for incorporation of a reasonable probabilistic model for generating data.
57                             We develop a new probabilistic model for genotype calling and haplotype p
58 anscription Start sites Tracking Program), a probabilistic model for identifying active miRNA TSSs fr
59                 Recently we have presented a probabilistic model for peptide identification that uses
60 ngle expression experiment, based on a joint probabilistic model for promoter sequence and gene expre
61  combination of a Hamming graph and a simple probabilistic model for sequencing errors.
62 urrently missing from thesauri, we develop a probabilistic model for the construction of synonym term
63 ility of estimated mutation rates, we used a probabilistic model for the statistical analysis.
64 the inferred discrete cell states to build a probabilistic model for the underlying gene regulatory n
65 e simple assumptions, we develop a dynamical probabilistic model for these misannotation chains.
66          We have developed and validated new probabilistic models for 3D motif sequences based on hyb
67                                Historically, probabilistic models for decision support have focused o
68                                       Simple probabilistic models for food web structure, however, ar
69 in goal in this paper is to develop accurate probabilistic models for important functional regions in
70 work enables the construction of very useful probabilistic models for protein families that allow for
71                                              Probabilistic models for these subcomponents provide new
72                         The ability to infer probabilistic models for timing may allow mice to adapt
73                                            A probabilistic model found reduced integration efficiency
74                                          Our probabilistic modeling framework combines a previously p
75                                By adopting a probabilistic modeling framework compatible with the fam
76 an process regression (GPR) is used to fit a probabilistic model from which replicates may then be dr
77 etypal statistical framework - the Graphical Probabilistic Model (GPM).
78                                            A probabilistic model has been developed by considering th
79  developments on computational side based on probabilistic modeling have shown promising direction to
80 oding of the chemical shift information in a probabilistic model in Markov chain Monte Carlo simulati
81 Examination of the accuracy of another indel probabilistic model in the light of our formulation indi
82 ty of the object are best accounted for by a probabilistic model in which the perceived boundary of t
83                                      We used probabilistic modelling in conjunction with protein stru
84                  The apparent limitations of probabilistic models in representing complex nucleotide
85                                          Its probabilistic model includes site-specific parameters co
86                                          The probabilistic model is a dynamic Bayes network whose par
87                   Moreover, we show that the probabilistic model is not as sensitive to various exper
88 ilarity, motifs, profiles, protein folds and probabilistic models - it is possible to develop charact
89 stallographic Map Interpreter), which uses a probabilistic model known as a Markov field to represent
90 oposed approach is based on a discriminative probabilistic model known as conditional random fields t
91                                         This probabilistic model leads to near-perfect classification
92          Furthermore, the flexibility in the probabilistic models makes it possible to extend this fr
93 Dynamic Regulatory Events Miner (mirDREM), a probabilistic modeling method that uses input-output hid
94                                              Probabilistic modeling methods akin to those used in spe
95     An alternative computationally efficient probabilistic model, mgMOS, uses Gamma distributions to
96 Modeling is presented that creates a compact probabilistic model of a given target network, which can
97                                Based on this probabilistic model of binding data, we further pursue i
98         Clone size and composition support a probabilistic model of cell fate allocation and in silic
99 tional priors in the context of a generative probabilistic model of ChIP data and genome sequence.
100 mportance sampling algorithm that combines a probabilistic model of DNA sequencing data with a enumer
101                                            A probabilistic model of each dichotomous outcome, derived
102 ed the goodness-of-fit of each theory with a probabilistic model of exon/intron evolution and multipl
103                                We describe a probabilistic model of expression-magnitude distortions
104                               Here, we use a probabilistic model of genome evolution that accounts fo
105 an attempt to improve the goodness of fit, a probabilistic model of late loss was created on the basi
106 ed by modifying miRDeep, which is based on a probabilistic model of miRNA biogenesis in animals, with
107 braries, we adapted miRDeep, which employs a probabilistic model of miRNA biogenesis, to analyze the
108 ear model for functional genomic data with a probabilistic model of molecular evolution.
109                                 We present a probabilistic model of NAHR and demonstrate its ability
110 been reconstructed here by using an explicit probabilistic model of network evolution.
111                                  We derive a probabilistic model of noise-corrupted and replicated ti
112 s, known collectively as Riptide, comprise a probabilistic model of peptide fragmentation chemistry.
113                               We show that a probabilistic model of phylogenetic profiles, trained fr
114                     We present a generative, probabilistic model of RNA polymerase that fully describ
115 ultiple alignment which couples a generative probabilistic model of sequence and structure with an ef
116                           Here, we present a probabilistic model of species discovery to assess the u
117 tion from noisy measurements is fused with a probabilistic model of the environment.
118                       We introduce a general probabilistic model of the gene structure of human genom
119      Our aim in this article is to develop a probabilistic model of the rearrangement process and a B
120  has been suggested to reflect learning of a probabilistic model of the sensory world.
121 ; and (iii) the assembly is polished using a probabilistic model of the signal-level data.
122 ance of NRE, WNLR, and Patlak analysis for a probabilistic model of time-activity curves.
123                   In this work, we present a probabilistic model of transcription dynamics which is f
124   Quantum theory is a powerful framework for probabilistic modeling of cognition.
125                                   Integrated probabilistic modeling of gametogenesis developed in res
126                                              Probabilistic modeling of loss-of-function screens and m
127                                              Probabilistic modeling of the transcriptomic data identi
128                                              Probabilistic modeling of these lag times revealed that
129 la chromatin states derived from data-driven probabilistic modelling of dependencies between chromati
130 mensional scaling, or using explicit spatial probabilistic models of allele frequency evolution.
131 ackground of other conserved sequences using probabilistic models of expected mutational patterns in
132 ations of human hematopoietic cells and used probabilistic models of gene expression and analysis of
133 ate that lateral gene transfers, detected by probabilistic models of genome evolution, can be used as
134 ling networks on a genome scale using unique probabilistic models of molecular interactions on a per-
135 ic-HMM model which generalizes the classical probabilistic models of Neyman and Felsenstein.
136 ant problem is how to formulate and estimate probabilistic models of observed genotypes that account
137 roach also makes it possible to develop full probabilistic models of pseudoknotted structures to allo
138 important because it means we can build full probabilistic models of RNA secondary structure, includi
139                       We present a family of probabilistic models of sound change as well as algorith
140 Here, this question is explored using simple probabilistic models of test behaviour.
141                      Generating and updating probabilistic models of the environment is a fundamental
142 orary views propose that the brain maintains probabilistic models of the world to minimize surprise a
143                                       We use probabilistic models of trait evolution to investigate t
144 ing major surgery to develop a multivariable probabilistic model optimized for nonlinearity of serum
145 mosomal splicing, in individual reads, using probabilistic models or a database of known splice sites
146 e (Lipschitz) continuous with regards to the probabilistic modeling parameters, B) convergent metabol
147                           Here we describe a probabilistic modeling pipeline that accounts for biolog
148                                          The probabilistic model predicted more trials correctly than
149                                          The probabilistic model predictions are weighted based on po
150                                          Our probabilistic model predicts the generation probability
151                                       Formal probabilistic models provide significantly greater accur
152                                         This probabilistic model provides a new global tool for scree
153                                              Probabilistic modelling provides a framework for underst
154 lity of transmission per coital act, using a probabilistic model published elsewhere.
155                                       LDA, a probabilistic model, reduces assemblages to sets of dist
156 human, mouse and Drosophila genes using 1017 probabilistic models representing over 600 different tra
157                              We then present probabilistic models showing how such large probabilitie
158 ral vision, together with the development of probabilistic modeling techniques, have provided insight
159                                       We use probabilistic modelling techniques to quantify pseudotim
160         A central piece of our approach is a probabilistic model that accommodates node, link and hyb
161 ian process regression (GPR) combined with a probabilistic model that accounts for uncertainty about
162                           dPeak implements a probabilistic model that accurately describes ChIP-Seq d
163                  We have developed a general probabilistic model that clusters genes and experiments
164 e resulting from structural variants using a probabilistic model that combines multiple signals in ba
165                                PIPmiR uses a probabilistic model that combines RNA structure and expr
166                                 We present a probabilistic model that deals with heterogeneity among
167                    Therefore, we formulate a probabilistic model that divides the genes into two sets
168           The basis of our approach is a new probabilistic model that finds the most likely haplotype
169                                            A probabilistic model that includes BI-RADS descriptors fo
170 on of data SOurces using Networks), a formal probabilistic model that integrates background biologica
171           Mixture model on graphs (MMG) is a probabilistic model that integrates network topology wit
172 e we extend these approaches and construct a probabilistic model that not only compensates for motor
173         Here, we develop a novel generative, probabilistic model that simultaneously captures local s
174 d validated the IMPACT-Better Ageing Model-a probabilistic model that tracks the population aged 35-1
175              Hidden Markov models (HMMs) are probabilistic models that are well-suited to solve many
176  modeling and flexible fitting; and 3) build probabilistic models that combine high-accuracy priors (
177                        Bayesian networks are probabilistic models that represent complex distribution
178 ngs, we propose the use of a single coherent probabilistic model, that encompasses much of the rich s
179                        In the wider field of probabilistic modelling, the stochastic EM (sEM) algorit
180   Ultimately, our results argue that for the probabilistic model there is indeed a statistical effect
181 model incorporates the read information in a probabilistic model through base quality scores within e
182 abilistic ANAlysis of genoMic dAta), a novel probabilistic model to account for confounding factors w
183 evised an efficient sampling method within a probabilistic model to achieve superior performance than
184                                 We present a probabilistic model to assess these risk trade-offs.
185 rom microarray/qRT-PCR platforms and a local probabilistic model to assign mapping results to the mos
186                         Here, we developed a probabilistic model to cluster genomic sequences based o
187                                 We present a probabilistic model to estimate the number of turbines t
188 oduce Mixture Model on Graphs (MMG), a novel probabilistic model to identify differentially expressed
189                                    We used a probabilistic model to infer 8349 (M, NF-kappaB/RelA, TG
190 c Map Interpreter), an algorithm that uses a probabilistic model to infer an accurate protein backbon
191                         We introduce a novel probabilistic model to infer transcription factor activi
192                              A comprehensive probabilistic model to obtain a definitive reconstructio
193                               We developed a probabilistic model to predict target-by-target harvesti
194  further smoothed and post-processed using a probabilistic model to predict the most likely transitio
195     To this end, we have designed a Bayesian probabilistic model to predict the probability of dichot
196 ministic screening algorithm combined with a probabilistic model to score gene candidates.
197                                   We apply a probabilistic model to the progeny of a single cross and
198                           This paper applies probabilistic modeling to evaluate the effectiveness of
199                  Here, we propose the use of probabilistic models to analyze the structure of the Ind
200                            We have developed probabilistic models to identify sequence motifs of resi
201                            We have developed probabilistic models to quantify propensities of residue
202 and wave simulations are combined with novel probabilistic models to quantify the likelihood of rogue
203   Of interest in this article, is the use of probabilistic modelling tools with which parameters and
204 ctive motifs with a positional preference, a probabilistic model (used reasonably) generally provides
205                         Here, we introduce a probabilistic model useful for predicting protein intera
206                                    We used a probabilistic model using methods that simultaneously es
207                                              Probabilistic modeling using binomial distribution funct
208                             A computer-based probabilistic model was created in which fibrosis of CHC
209                                            A probabilistic model was developed for the evaluation of
210 s and maximum likelihood estimation of three probabilistic models was used to automatically construct
211                          Using an atom-based probabilistic model, we estimate the membrane helical in
212                                      Using a probabilistic model, we found that 1,922 genetic interac
213                               Using a simple probabilistic model, we generate a set of predictions on
214 th paired read and read depth signals into a probabilistic model which can analyze multiple alignment
215 ome these problems we developed a generative probabilistic model which identifies a (small) subset of
216      Here we use this principle to construct probabilistic models which describe the correlated spiki
217 g-linear models (CLLMs), a flexible class of probabilistic models which generalize upon SCFGs by usin
218           Our approach is based on a unified probabilistic model, which is learned from the data usin
219                      We present a principled probabilistic model with a Bayesian inference scheme to
220        Furthermore, by providing an explicit probabilistic model with a relatively simple nonlinear s
221 omes from combining well structured Bayesian probabilistic modeling with a multi-faceted Markov Chain
222 us, our formulation will provide other indel probabilistic models with a sound reference point.
223 he presence of variable information requires probabilistic models, yet it is unclear whether animals
224 lly from single-cell swimming behavior using probabilistic models, yet the mechanistic foundations of

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