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1 e oxazolidinedione ring oxygen and the CA II protein backbone.
2 glycine peptide, which is a good model for a protein backbone.
3 the second cysteine was introduced into the protein backbone.
4 ment linkers that position dyes far from the protein backbone.
5 the spin label and the local dynamics of the protein backbone.
6 to form within a compact conformation of the protein backbone.
7 moved from the 12C=16O band of the unlabeled protein backbone.
8 es or by engaging in hydrogen bonds with the protein backbone.
9 orientation and distance with respect to the protein backbone.
10 n unprecedented covalent modification of the protein backbone.
11 eferentially excluded/accumulated around the protein backbone.
12 d by covalent linkage of the cysteine to the protein backbone.
13 ereas beta(var) allows accumulation of alpha protein backbone.
14 om dissociation of the N-Calpha bonds of the protein backbone.
15 ing through a cis-trans isomerization of the protein backbone.
16 kbone dynamics are propagated throughout the protein backbone.
17 together with additional small shifts of the protein backbone.
18 e, on the structure and dynamics of the TPMT protein backbone.
19 he flexibility of amino acid residues of the protein backbone.
20 mino acid sequences compatible with a target protein backbone.
21 adily be used in simulations with a flexible protein backbone.
22 erimental method to assess the motion of the protein backbone.
23 dical species that then propagates along the protein backbone.
24 ese residues induce strain in the DNA and/or protein backbone.
25 ave been used to assign the signals from the protein backbone.
26 lates fluorophilic sites in proximity to the protein backbone.
27 tes in a water-mediated hydrogen bond to the protein backbone.
28 between the Trp ring and its linkage to the protein backbone.
29 s directly attached to the asparagine of the protein backbone.
30 ecause of constraints imposed by P225 on the protein backbone.
31 by incorporating 13C at two positions in the protein backbone.
32 Cross-linking was to His62, mainly to the protein backbone.
33 of ligands, amino acid side chains, and the protein backbone.
34 due that links the polysaccharide chain to a protein backbone.
35 t mainly using the carbonyl oxygens from the protein backbone.
36 es its conformation, now pointing toward the protein backbone.
37 to which probe dynamics reflect those of the protein backbone.
38 A backbone, comparable to phi and psi in the protein backbone.
39 elding a probe that is rigid relative to the protein backbone.
40 ails of the interaction between urea and the protein backbone.
41 chitectures to predict phi and psi angles of protein backbone.
42 ncluding unanticipated hydrogen bonds to the protein backbone.
43 lly stabilizes the fold without altering the protein backbone.
44 nd fifth bonds linking the spin-label to the protein backbone.
45 nergy sequences for nine naturally occurring protein backbones.
46 s a simple mimic of cation interactions with protein backbones.
47 lactose (Gal) to hydroxyproline (Hyp) in AGP protein backbones.
48 y apparent adverse affects on the glycans or protein backbones.
50 trace unambiguously approximately 85% of the protein backbone, allowing us to identify the structural
52 (15)N labeling to structural changes of the protein backbone, although no such bands were previously
55 engths of all six key hydrogen bonds between protein backbone amides and the sulfur atoms of the four
56 een recognized that hydrogen bonds formed by protein backbone amides with cysteinyl S(gamma) atoms pl
57 uniform distributions of cleavages along the protein backbone and consequently higher sequence covera
59 , and hydrogen bond interactions between the protein backbone and heme functional groups are readily
60 ion implies that the interaction between the protein backbone and osmolyte polar groups is more favor
61 ns two potential ET pathways: P1 through the protein backbone and P2 through the H-bond between the C
65 dispersion interaction between urea and the protein backbone and side chains is stronger than for wa
66 ypothesis that rapid Monte-Carlo sampling of protein backbone and side-chain conformational space wit
67 Unfavorable entropic contributions from the protein backbone and side-chain residues in the vicinity
72 revealed a significant rearrangement of the protein backbone and the side chains of the Glu167 and A
74 a combination of hydrogen bonds between the protein backbone and uracil, with the pocket shaped to p
77 ng of tryptophan side-chains relative to the protein backbone, and orientational fluctuations of enti
78 inent and sensitive vibrational bands of the protein backbone, and they relate to protein secondary s
79 gen bonds between the N-acetyl group and the protein backbone are an important integral part of the o
83 water-mediated interaction of TMAO with the protein backbone, as suggested by recent experimental st
84 e of (4,2)D triple-resonance experiments for protein backbone assignment and a Hybrid Backprojection/
89 ragmentation was observed to occur along the protein backbone at the C-terminal of aspartic acid resi
90 DAs) from bacterial pathogens, modifying the protein backbone at the Calpha atom of a Pro residue to
92 in the pattern of anticorrelated motions for protein backbone atoms when the transition state occupie
93 es are found to repeatedly interact with the protein backbone atoms, weakening individual interstrand
94 tron capture dissociation (ECD) for cleaving protein backbone bonds while preserving noncovalent inte
96 fects were not exhibited uniformly along the protein backbone but occurred in a site-specific manner,
97 of the monosaccharides located close to the protein backbone, but failed to detect those further fro
98 ding caused no significant alteration of the protein backbone, but movements of several amino acid si
99 ucture or the sub-nanosecond dynamics of the protein backbone, but resulted in a >100-fold increase i
100 n state, involves little or no change in the protein backbones, but there are conformational rearrang
101 est that long-range dynamical changes in the protein backbone can have a significant effect on the fu
103 Knotting has been previously identified in protein backbone chains, for which these mechanical cons
105 nts, for example, cause site-specific capsid protein backbone cleavage that inhibits viral genome inj
108 helps to impede proton permeation due to the protein backbone collective macrodipoles that create an
109 base region of the substrate are made by the protein backbone, complicating the identification of res
110 to provide high-resolution insight into the protein backbone conformation and dynamics in fibrils fo
111 Far-UV CD spectra of G473D indicate that the protein backbone conformation is remarkably changed, and
112 sed to measure the temperature-dependence of protein backbone conformational fluctuations in the ther
113 have devised two novel automated methods in protein backbone conformational state prediction: one me
115 h alterations in both protein side-chain and protein backbone conformations, and allows for changes i
117 an overall, average sense, DeltaC(p) for the protein backbone, determined from the NMR dynamics measu
121 spectrometry demonstrates that it increases protein backbone dynamics in domain-domain interfaces at
124 e-directed spin labeling of T4 lysozyme, and protein backbone dynamics, as also shown by model peptid
125 riance with the common crank-shaft model for protein backbone dynamics, which predicts the opposite b
128 l shift (ACS) of a particular nucleus in the protein backbone empirically correlates well to its seco
130 owed by deformation of covalent bonds in the protein backbone, eventually leading to molecular fractu
132 fluence a biocatalyst's function by altering protein backbone flexibility and active site accessibili
133 rtual screening, especially with modeling of protein backbone flexibility, may be broadly useful for
135 e role played by the coupling between subtle protein backbone fluctuations and the solvation by water
137 ion experiments, we show that, in the mutant protein, backbone fluctuations are restricted to the pic
139 used to probe the flow of energy through the protein backbone following excitation of a heater dye, a
140 uggest that the subdiffusional motion of the protein backbone found here may promote rapid folding of
141 oreceptors where signals propagate along the protein backbone from an N-terminal sensor to HAMP.
142 ation and eccentricity, the deviation of the protein backbone from the x-ray crystal structure, the o
143 key observation: the transfer free energy of protein backbone from water to a water/osmolyte solution
144 aspartate inserts a methylene group into the protein backbone, generating a "kink", and may drastical
145 d dihedral angle restraints to determine the protein backbone geometry with a precision paralleling t
147 olar interactions involving fluorine and the protein backbone have been frequently observed in protei
148 erent conformation in which the atoms of the protein backbone have moved by as much as 6.5 A from the
151 there is a shift in the 1-CPI complex of the protein backbone in helices F and I, repositioning the s
152 with OmpA(+) E. coli, indicating the role of protein backbone in mediating the OmpA binding to HBMEC.
156 the linkage of oligosaccharides to the BclA protein backbone, in its absence, GlcNAc can serve as a
158 he D. vulgaris flavodoxin, the corresponding protein backbone influence on E sq/hq is significantly s
159 ironments because of the competition between protein backbone intramolecular and protein-water interm
160 ation shell, large structural changes in the protein backbone, involving both solvent accessible and
161 that the direct-binding model of urea to the protein backbone is compatible with available experiment
163 t the flexibility of certain portions of the protein backbone is increased in the partially structure
165 cate that one H-bonding interaction from the protein backbone is needed to reproduce the experimental
167 of a strong hydrogen bond from A1(-) to the protein backbone is possible only in the case of A1A(-).
170 These data show that the majority of the protein backbone is rigid on the nanosecond to picosecon
172 y restricts conformational entropy along the protein backbone is used to identify putative allosteric
173 gy for photochemical cleavage of peptide and protein backbones is described, which is based on a sele
174 many-fold more rapidly than turnover of the protein backbone itself, consistent with a regulatory ro
177 recognition that utilizes both alpha-helical protein backbone matching to the (2 -1 0) surface topogr
178 he resulting pyrenyl cation radical with the protein backbone may be responsible for the protein clea
179 lded protein of moderate or larger size, the protein backbone may weave through itself in complex way
180 ration", which is highly atypical in being a protein backbone-modifying activity, rather than a side-
181 cation network within a protein subunit tune protein backbone motions at a distal site to enable allo
182 s, slow protein side-chain motions, and fast protein backbone motions being activated consecutively.
184 ated coarse-grained models that describe the protein backbone motions of the CRP/FNR family transcrip
186 druggability estimation to account for light protein backbone movement and protein side-chain flexibi
187 iously, an approach to loop remodeling where protein backbone movement is directed by side-chain rota
190 via the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups.
198 e site of covalent attachment of heme to the protein backbone of rabbit CYP4B1; (ii) this I-helix glu
200 f a novel covalent ester linkage between the protein backbone of the CYP4 family of mammalian P450s a
203 we used amide-to-ester substitutions in the protein backbone of the selectivity filter to alter ion
204 gnificant difference in the influence of the protein backbone of the so-called 60s loop region betwee
209 eins with amide linkages), when termini of a protein backbone pierce through an auxiliary surface of
210 d by DFT calculations, which reveal that the protein backbone plays a significant role in controlling
212 served amide modes suggest alteration of the protein backbone (possibly in the vicinity of A(1)) upon
213 we find a surprisingly high stiffness of the protein backbone, reflected by a persistence length of 1
214 ritical ligand-binding induced movement of a protein backbone region which increases the pocket size
216 Using NMR techniques optimized for large proteins, backbone resonance assignments were also deter
219 in this regime and to identify signatures of protein backbone secondary (and tertiary) structure.
220 ra show sporadic fragmentation over the full protein backbone sequence of the subunits with a bias to
223 major hydrogen bonding interactions with the protein backbone similar to darunavir (1) or inhibitor 2
224 ce changes that remodel the structure of the protein backbone so that the functional groups are prope
225 nal design afforded four hCAII variants with protein backbone-stabilizing and hydrophobic cofactor-em
229 free energy sequences were generated for 108 protein backbone structures by using a Monte Carlo optim
230 catalytic site giving vibrational changes of protein backbone, substrate, amino acid residues, and co
231 000 cm(-1) region that arise from changes of protein backbone, substrate, amino acid side chain, and
232 show that, even in the presence of the polar protein backbone, sufficiently hydrophobic protein surfa
233 predominantly by inhibiting rotations of the protein backbone that are coupled to the global closing
234 olate bridge, reveals the following: (i) The protein backbones (the "SOD rack") remain essentially un
235 cterized and compared the fluctuation of the protein backbone, the volumes in the intracellular pocke
236 accharide side chains are linked to the BclA protein backbone through an N-acetylgalactosamine (GalNA
237 ct evidence of charge transport control in a protein backbone through external mutagenesis and a uniq
238 The remodeling of short fragment(s) of the protein backbone to accommodate new function(s), fine-tu
240 t ssDNA-free Pot1pN adopts a similar overall protein backbone topology as ssDNA-bound Pot1pN does.
244 main undergoes conformational changes of the protein backbone upon CO photolysis and that the changes
246 ernately optimizing the sequence for a fixed protein backbone using rotamer based sequence search, an
247 ircular dichroism), and (3) fragmentation of protein backbones (via sodium dodecyl sulfate-polyacryla
248 -type CID case, extensive cleavage along the protein backbone was noted, which yielded richer sequenc
249 , extensive nonspecific fragmentation of the protein backbone was observed, with 50% sequence coverag
252 ate spin label behavior when attached to the protein backbone we developed a novel approach that enha
253 ntrast based on the Amide I resonance of the protein backbone, we identify the protein distribution w
255 p in the normal position with respect to the protein backbone were active; the relative activities co
256 The amide-to-ester substitutions in the protein backbone were introduced using protein semisynth
257 ic surfaces, as well as those regions of the protein backbone where fluctuations in different timesca
258 re strongly favored in interactions with the protein backbone, whereas there is little preference for
259 re prominent spectroscopic signatures of the protein backbone, which are routinely used in ultraviole
260 ydrophobicity and restricted mobility of the protein backbone, which can explain the nucleation and f
261 residue forms a stabilizing contact with the protein backbone, while the second makes a base-specific
262 arisen, viz. that they lack the character of protein backbones whose interactions would limit the fol
264 nd II regions involves rearrangements of the protein backbone within these regions, rather than rigid
265 llocate the deuterium distribution along the protein backbone, yielding a backbone-amide protection m
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