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1 ability is probably widespread among aquatic proteobacteria.
2 tivity over the ATPase turnover in the alpha-proteobacteria.
3 ed Bacteroidetes and Firmicutes with reduced Proteobacteria.
4 ly related to the genera Paracoccus of alpha-Proteobacteria.
5 is widespread and conserved among the gamma-proteobacteria.
6 on of TH17-related genes was associated with Proteobacteria.
7 bserved between biopsy eosinophil values and Proteobacteria.
8 ription factor CuxR in plant symbiotic alpha-proteobacteria.
9 from cyanobacteria, mitochondria arose from proteobacteria.
10 DNA binding protein conserved in most gamma-proteobacteria.
11 evolved more recently as a direct target in Proteobacteria.
12 Bacilli (Firmicutes), and in alpha and beta Proteobacteria.
13 erial community dominated by beta- and gamma-Proteobacteria.
14 mechanism of F1F0-ATPase regulation in alpha-proteobacteria.
15 his has not been demonstrated in other alpha-proteobacteria.
16 d in bacteria as phylogenetically distant as proteobacteria.
17 n and growth rate among 13 strains of marine Proteobacteria.
18 ccinyl-CoA in non-plant eukaryotes and alpha-proteobacteria.
19 nstructed SahR regulons in the genomes of 62 Proteobacteria.
20 portance to the specific lifestyles of alpha-proteobacteria.
21 ctinobacteria, Bacteroidetes, Firmicutes and Proteobacteria.
22 n mice primarily by decreasing the levels of Proteobacteria.
23 ly similar to that of chloroplasts and other proteobacteria.
24 acterium belonging to sulfur-degrading alpha-proteobacteria.
25 re found in other Actinobacteria, as well as Proteobacteria.
26 which are also conserved among diverse alpha-Proteobacteria.
27 ust was low, but dominated by Firmicutes and Proteobacteria.
28 istinct genes in a set of 22 alpha and gamma proteobacteria.
29 pecies and in many polarly flagellated gamma proteobacteria.
30 RYGB; 37% of increased bacteria belonged to Proteobacteria.
31 ms using KCl as a main osmoprotectant to the Proteobacteria.
32 in relative abundances of Actinobacteria and Proteobacteria.
33 ded Enterococcus, Streptococcus, and various Proteobacteria.
34 of the phyla Firmicutes, Bacteroidetes, and Proteobacteria.
35 characterized by a relative expansion of the Proteobacteria.
36 pical of the enzymes from actinobacteria and proteobacteria.
37 teria, Chloroflexi, Deinococcus-Thermus, and Proteobacteria.
38 acteriodetes and a corresponding increase in Proteobacteria.
39 ion pathways and transcriptional regulons in Proteobacteria.
40 samples were Actinobacteria, Firmicutes, and Proteobacteria.
41 throughout the Firmicutes, Fusobacteria and Proteobacteria.
42 alN catabolism and its regulation in diverse Proteobacteria.
43 acteroidetes, Firmicutes, Actinobacteria and Proteobacteria.
44 ous pathway that arose specifically in alpha-proteobacteria.
45 unctions is widely distributed in pathogenic Proteobacteria.
46 g results from bacteriophage infecting gamma-Proteobacteria.
47 ent growth inhibition (CDI) systems of gamma-proteobacteria.
48 of the phyla Firmicutes, Bacteroidetes, and Proteobacteria.
49 d consensus-degenerate primers targeting the Proteobacteria.
50 characterized by a preponderance (c. 90%) of Proteobacteria.
51 a(13)C taxa, with methane-metabolizing gamma-proteobacteria.
52 present in beta-, gamma-, delta- and epsilon-proteobacteria.
53 ately drawn from the phyla Bacteroidetes and Proteobacteria.
54 Fusobacteria, Firmicutes, Actinobacteria and Proteobacteria.
55 red community dominated by Acidobacteria and Proteobacteria.
56 bacteria, NBs are found exclusively in gamma-proteobacteria.
57 -oxidizing genes under sulfide stress in the Proteobacteria.
58 rides reduced the prevalence of inflammatory Proteobacteria.
59 LB), is a non culturable member of the alpha-proteobacteria.
60 h the phyla Anaerolinea, Ignavibacteria, and Proteobacteria.
61 teins from beta-, gamma-, delta- and epsilon-proteobacteria.
62 nolytic gene clusters from Bacteroidetes and Proteobacteria.
63 free-living and obligate intracellular alpha-proteobacteria.
64 ed with the Alphaproteobacteria class of the Proteobacteria.
65 system which is highly conserved among gamma-proteobacteria.
66 f Paracoccus denitrificans and related alpha-proteobacteria.
67 H was primarily represented by heterotrophic Proteobacteria.
68 th the medicated pigs showing an increase in Proteobacteria (1-11%) compared with nonmedicated pigs a
69 S sequences, followed by Firmicutes (12.0%), Proteobacteria (10.4%), Verrucomicrobia (1.2%) and Syner
72 he microbiota (90%), whereas in digesta both Proteobacteria (47%) and Firmicutes (38%) showed high ab
74 rity), primarily from Firmicutes (92.6%) and Proteobacteria (6.9%), via 16S rRNA gene amplicon sequen
75 e chicken blood microbiota were dominated by Proteobacteria (60.58% +/- 0.65) followed by Bactroidete
76 ovel lineages of podoviruses infecting alpha-proteobacteria, a bacterial class critical to oceanic ca
77 ase subgroup 1beta in tested alpha- and beta-proteobacteria, a branched-chain aminotransferase in tes
78 la related to Firmicutes, Bacteroidetes, and Proteobacteria accelerated manure biodegradation likely
79 Porphyromonas gingivalis or ligature, gamma-proteobacteria accumulate and stimulate host immune resp
80 ial sequences were related to Cyanobacteria, Proteobacteria, Actinobacteria and Bacteriodetes previou
81 "and "F-type" which were highly abundant in Proteobacteria, Actinobacteria and Firmicutes, respectiv
86 ntained 5 major bacterial phyla: Firmicutes, Proteobacteria, Actinobacteria, Fusobacterium, and Bacte
88 Chloroflexi and Crenarchaeota, but lower for Proteobacteria and Actinobacteria in highly contaminated
89 oportion of oxygen-tolerant organisms of the Proteobacteria and Actinobacteria phyla associated with
90 ated by specific groups/species belonging to Proteobacteria and Actinobacteria phyla; however, simila
92 sity between mothers, an overall increase in Proteobacteria and Actinobacteria, and reduced richness.
95 f GapR, which are ubiquitous among the alpha-proteobacteria and are encoded on multiple bacteriophage
99 ory system is conserved throughout the gamma-proteobacteria and controls key pathways in central carb
100 raries from the four mats were similar, with Proteobacteria and Cyanobacteria being the most abundant
101 on is typified by both expansions in aerobic Proteobacteria and decreases in anaerobic Firmicutes and
102 g the 15 phyla identified, the abundances of Proteobacteria and Deferribacteres were changed in infec
103 ortunistic pathogens belonging to the phylum Proteobacteria and Enterococcus genus have also been lin
105 and phylogenetic diversity, was dominated by Proteobacteria and Euryarchaeota and was significantly e
106 al changes following ZVI exposure, with more Proteobacteria and fewer Bacteroidetes in the ZVI-amende
109 in both bloom and control samples with Alpha-proteobacteria and Gamma-proteobacteria being the predom
111 a proportional increase in the gram negative Proteobacteria and gram positive Actinobacteria phyla; t
112 omoserine lactones is the paradigm for QS in Proteobacteria and is particularly well understood in th
113 ride, a cell wall component of Gram-negative Proteobacteria and known inducer of lupus in mice, into
114 ersity and an altered composition, with more Proteobacteria and less Bacteroidetes compared with heal
116 gues are present in alpha-, beta-, and gamma-proteobacteria and multiple eukaryotes, including humans
117 nd identified a protein termed BioR in alpha-proteobacteria and predicted that BioR would have the bi
118 ned on a normal diet (including increases in Proteobacteria and striking decreases in Bacterioidetes)
119 ugh MapZ orthologs/homologs is widespread in proteobacteria and that the use of allosterically regula
120 e different symbiont phylotypes (one epsilon-proteobacteria and two gamma-proteobacteria) that formed
121 by a reduction in the relative abundance of Proteobacteria and Verrucomicrobia (specifically Akkerma
122 bligate methanotrophs belonging to the Phyla Proteobacteria and Verrucomicrobia require oxygen for re
125 otypes across the Bacteroidetes, Firmicutes, Proteobacteria, and Actinobacteria, the four most common
126 nes serve as quorum-sensing signals for many Proteobacteria, and acyl-homoserine lactone signaling is
127 obiota devoid of opportunistic pathogens and Proteobacteria, and conventional SPF mice that harbor a
128 s of other P. putida strains, in other gamma-Proteobacteria, and in beta- and alpha-Proteobacteria, f
129 ded in a wide range of host-associated alpha-proteobacteria, and it is likely that the VtlR genetic s
130 found that CrsR is conserved in many aquatic proteobacteria, and most of the time it is associated wi
132 tified a core earthworm community comprising Proteobacteria ( approximately 50%) and Actinobacteria (
138 N2 fixation rates indicates that these gamma-proteobacteria are unlikely to be responsible for previo
140 is CbiX can generally be identified in alpha-proteobacteria as the terminal enzyme of siroheme biosyn
141 tial, including members of Bacteroidetes and Proteobacteria, as well as several poorly characterized
142 on in the gut--Bacteroidetes, Firmicutes and Proteobacteria--as well as one aerobic pathogen (Staphyl
144 al classes that are active in the gut (gamma-Proteobacteria, Bacilli and Actinobacteria), all of whic
147 bacteria in C. elegans habitats, with phyla Proteobacteria, Bacteroidetes, Firmicutes, and Actinobac
149 eobacteria dominated in Stage 1, but epsilon-Proteobacteria became more important in Stages 2 and 3,
151 samples with Alpha-proteobacteria and Gamma-proteobacteria being the predominant classes detected.
152 attern emerged with Bacteria from the phylum Proteobacteria being the prominent taxon among the fores
153 largely conserved at the phylum level, with Proteobacteria (beta-proteobateria), Bacteroidetes, and
154 species richness, and relative abundance of Proteobacteria, but was negatively correlated with relat
155 plants include nitrogen-fixing Gram-negative proteobacteria called rhizobia that are able to interact
156 ow here that the evolution of gene blocks in proteobacteria can be described by a small set of events
157 d with low-grade inflammation, and harboring proteobacteria can drive and/or instigate chronic coliti
158 in the sediments were facultative anaerobic Proteobacteria capable of coping with OAI-associated red
159 d in three main groups: select heterotrophic Proteobacteria, chemoautotrophic Thaumarchaeota, and pho
160 e bacteria in the clouds belong to the gamma-Proteobacteria class, among which the Pseudomonas genus
161 Perturbations eliciting an expansion of Proteobacteria coincided with ectopic lesions and tissue
162 obacteria, but depleted in Bacteroidetes and Proteobacteria common to mammalians, is compositionally
163 the dominant alpha-proteobacteria and gamma-proteobacteria communities in bulk soil and root endosph
164 months, when the microbiota had stabilized, Proteobacteria, comprising gram-negative organisms, were
167 y increased abundance of the bacterial phyla Proteobacteria, Deferribacteres, and TM7, among which th
168 Firmicutes (appearance of Erysipelotrichi), Proteobacteria (Desulfovibrionales) and Verrucomicrobia,
170 sputum total leukocyte values (predominantly Proteobacteria) differed markedly from those associated
176 63; 95% CI, 1.22-5.32; P = 0.015), and gamma-proteobacteria domination of fecal microbiota (HR, 2.64;
177 5% CI, 1.42-31.80; P = 0.016), whereas gamma-proteobacteria domination predicted PCs postengraftment
179 The mechanisms enabling the outgrowth of Proteobacteria during inflammation are incompletely unde
180 hat in contrast to other characterised Gamma-proteobacteria, E. coli Sxy is positively autoregulated
183 representation in any of the disease groups, Proteobacteria, Enterobacteriaceae, and Escherichia were
184 ctinobacteria, Bacteroidetes, Firmicutes and Proteobacteria (especially Roseobacter of its alpha line
186 icantly decreased, while those of the phylum Proteobacteria, especially the family Enterobacteriaceae
187 typing of IgA-coated cecal microbiota showed Proteobacteria evading antibody coating in the TLR5(-/-)
188 specificity are widespread in all classes of Proteobacteria, except Deltaproteobacteria, and in flowe
189 ocathode bacterial community was enriched in Proteobacteria, exoelectrogens, and putative producers o
193 dicate that multi-domain proteins evolved in Proteobacteria for specific functions in maintaining cel
194 gamma-Proteobacteria, and in beta- and alpha-Proteobacteria, for example, in genomes of Enterobacteri
195 rom OP11, Actinobacteria, Bacteroidetes, and Proteobacteria found in high relative abundance across a
198 eterocystous cyanobacteria and heterotrophic proteobacteria had the genetic potential for N2 fixation
199 xamined osmoprotection in the photosynthetic Proteobacteria Halorhodospira halophila and Halorhodospi
202 nt homology to Francisella tularensis (gamma-proteobacteria) have been characterized in several tick
203 e found in the genomes of other marine alpha-proteobacteria, implying lipid renovation is a common st
204 detected in association with an expansion of Proteobacteria in both UC and CD, while expression of li
207 the proportion of the phylum Firmicutes and Proteobacteria in stool was significantly decreased and
208 observed a significantly higher abundance of Proteobacteria in the anterior nares in non-SSTI partici
209 c bypass is the comparative overabundance of Proteobacteria in the distal gut microbiome, which is di
210 revealed decreased Firmicutes and increased Proteobacteria in ulcerated sites, as compared with heal
213 0 orthologues are found in a subset of alpha-proteobacteria, including Agrobacterium tumefaciens Usin
214 is an important nutrient for several alpha-2 Proteobacteria, including N2-fixing plant endosymbionts
215 site, and was dominated by alpha- and beta- proteobacteria, including Rhodobacter, Methylibium, Rhod
216 Other highly labeled species were primarily Proteobacteria, including: Mesorhizobium sp., Variovorax
218 genetic level, Bacteroidetes decreased while Proteobacteria increased in the CRS group at the phylum
219 receptors were found in different classes of proteobacteria, indicating that this mode of response to
220 ites, but CsrA in bacteria outside the gamma-proteobacteria is antagonized by a protein called FliW.
221 achnospiraceae/Clostridiales), the second by Proteobacteria (Klebsiella/Enterobacter), the third by B
222 al mucosal tissue, and fusobacteria and beta-Proteobacteria levels increased with advancing cancer st
223 o-Bacteroidetes ratios and endotoxin-bearing Proteobacteria levels-but also maintains intestinal barr
224 ifferently than what was described for other proteobacteria like Escherichia coli We argue that this
226 obacteriaceae family of human gut-associated Proteobacteria maintain a GUS operon under the transcrip
227 clear that T2S is largely restricted to the Proteobacteria, occurring in many, but not all, genera i
228 a similar Hg(II) uptake mechanism within the proteobacteria of accidental Hg(II) transport through he
229 roteins encoded in the genomes of other beta-proteobacteria of the Azoarcus/Thauera group further sug
231 f the variation in the relative abundance of Proteobacteria on the skin of healthy individuals, suppo
233 was the dominant phylum in MF pups, whereas Proteobacteria (P < 0.001) and Bacteroidetes (P < 0.05)
235 utes (P </=0.001), fusobacteria (P = 0.003), proteobacteria (P </=0.001), synergistetes (P = 0.04), a
236 tinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria phyla, we found that potent Nod-like rece
237 profoundly significant increase in taxa from Proteobacteria phylum in comparison to healthy subjects.
238 d after supplementation with a member of the Proteobacteria phylum, an enteroadherent Escherichia col
239 reased at exacerbation were primarily of the Proteobacteria phylum, including nontypical COPD pathoge
240 of some functional microorganisms, including Proteobacteria, Planctomycetales, Acinetobacter, Pseudom
242 ellicle biofilms formed by Bacteroidetes and Proteobacteria (predominantly of the alpha and gamma cla
243 n isolate of the SAR11 clade of marine alpha-proteobacteria, produces methane from MPn, stoichiometri
245 tures in many lower organisms, in particular proteobacteria, remains poorly understood and incomplete
246 r enrichment or reductions of Firmicutes and Proteobacteria, respectively, at a false discovery rate
247 tingly, alignments of FlgG from most epsilon proteobacteria reveal a conserved site of modification.
248 ding Actinobacteria, alpha-,beta-, and gamma-proteobacteria, revealing a common role of this Amadori
249 apples and reconstructed microbiomes: alpha-Proteobacteria-rich communities promote proliferation, w
250 ection of the phosphate-sensing machinery in proteobacteria shows that adaptive, not neutral, mutatio
253 among soil bacteria with Actinobacteria and Proteobacteria, specifically Betaproteobacteria and Gamm
256 oidaceae was reduced, whereas Firmicutes and Proteobacteria, such as Ruminococcaceae, Lachnospiraceae
257 logs of FlgJ produced by the beta- and gamma-proteobacteria, such as Salmonella enterica, Vibrio spp.
258 in various archaea, cyanobacteria, and some proteobacteria, such as the enterobacterium, Serratia sp
260 ed in a genome from a different subphylum of Proteobacteria than that in which the molecule had first
262 Micavibrio aeruginosavorus are Gram-negative proteobacteria that are obligate predators of other Gram
263 ecies of non-pathogenic and pathogenic gamma-proteobacteria that infect different hosts, including hu
264 minase in fluorescent pseudomonads and other proteobacteria that we termed PtaA for "periplasmic tran
265 es (one epsilon-proteobacteria and two gamma-proteobacteria) that formed specific associations with o
266 was found to be distinct from those found in proteobacteria, the degradosomes of which are assembled
267 hia coli and the majority of beta- and gamma-proteobacteria, the fourth step of lipid A biosynthesis,
270 hundreds of BGCs distributed throughout the Proteobacteria; their products are aryl polyenes, lipids
271 samples had a greater than 10% abundance of Proteobacteria, there were only 19/196 (10%) positive cu
272 nsduction system utilized by a wide range of proteobacteria to sense environmental changes in oxygen
273 widespread molecular weapon deployed by many Proteobacteria to target effectors/toxins into both euka
275 Widely found in animal and plant-associated proteobacteria, type VI secretion systems (T6SSs) are po
276 under purifying selection but have, in alpha-proteobacteria, undergone a burst of diversification fol
281 this response has been well characterized in proteobacteria, very little is known about the effectors
283 An increase in the relative abundance of Proteobacteria was observed in the posttransplantation s
284 dazole administration, whereas domination by Proteobacteria was reduced 10-fold by fluoroquinolone ad
292 acteria, and Deinococcus-Thermus, but not in Proteobacteria, where (p)ppGpp regulates RNA polymerase
293 he role of TolC has largely been explored in proteobacteria, where it functions as a metabolite and p
296 ngly conserved in more closely related alpha-proteobacteria with similar ecological niches as S. meli
297 s alone primarily decreased the abundance of Proteobacteria, with the prolonged suppression of some m
298 is associated with significant expansion of Proteobacteria within the intestinal microbiota and incr
299 As can directly modulate mRNA degradation in Proteobacteria without interfering with translation.
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