ライフサイエンスコーパス: publicly

1 n the abundant RNA sequencing data available publicly.

2 A publicly accessible computational package performing suc

3 BindingDB, www.bindingdb.org, is a publicly accessible database of experimental protein-sma

4 The browser's publicly accessible databases are the backbone of a rich

5 Among 50 complex traits with publicly accessible GWAS summary statistics (Ntotal appr

6 In response to the growing availability of publicly accessible GWAS summary-level results data, our

7 Through mining publicly accessible PCa gene expression datasets, we fou

8 One is a publicly accessible superconducting transmon device (www

9 ce tool, the source code and sample data are publicly accessible through the NITRC website.

10 n Neisseria gonorrhoeae was developed and is publicly accessible.

11 alterations and tumor types, all results are publicly accessible.

12 s to explore new biological mechanisms or by publicly admitting what is not known in the form of an o

13 policy conversations, and express themselves publicly-all key components of democratic politics-more

14 is, and transplantation services were funded publicly and free at the point of care delivery in 50 (4

15 imens with CAI, incorporating data available publicly and from our Genomics of Chronic Renal Allograf

16 ly and evolutionarily relevant metadata with publicly archived sequence data in a structured manner,

17 n-depth manual, and a tutorial are available publicly at www.github.com/billgreenwald/pgltools , and

18 S, PIPE-CLIP, Piranha and Pyicoclip, on four publicly available Ago2-HITS-CLIP datasets and one unpub

19 e carried out a systematic evaluation of ten publicly available AMP prediction methods.

20 We make the paradigm publicly available and describe obstacles and solutions

21 f US organ transplant center performance are publicly available and used for quality oversight.

22 The comparison of the performance of a publicly available and well-understood coreference resol

23 ity and lack of accepted reporting standards-publicly available animal screening data are only access

24 erpretation of how PDB data relates to other publicly available annotations, we developed a novel dat

25 The class, identified from publicly available antimalarial screening data, was opti

26 It is publicly available as a MATLAB package.

27 e array data for each protein have been made publicly available as a resource for cardiovascular dise

28 ntic similarity and relatedness measures are publicly available as detailed in the article.

29 Software used in this study are publicly available at the authors' websites.

30 etailed information about these resources is publicly available at the ENCODE portal.

31 Source code, documentation, and examples are publicly available at www.radiomics.io With this platfor

32 d on how exactly to increase and make use of publicly available automated external defibrillators.

33 ased on a formal protocol developed and made publicly available before the conduct of the review; dev

34 wed predefined analysis plans that were made publicly available beforehand, and they all have a stati

35 equires basic bioinformatics skills and uses publicly available bioinformatics software.

36 Numerous publicly available biomedical databases derive data by c

37 on T1 and T2 bladder cancer tissues and used publicly available bladder cancer profiling studies to p

38 compared with results obtained using eleven publicly available brain extraction methods.

39 s using the largest set of manually labeled, publicly available brain images in the world and compare

40 s data profiled from tumor samples were made publicly available by the Cancer Genome Atlas (TCGA).

41 Analysis of publicly available cancer data also revealed a significa

42 te its use and interpretation by analyzing a publicly available cancer dataset with more than 20 000

43 MT was evaluated by means of validation in a publicly available cell line data set.

44 The present study has taken advantage of publicly available cell type specific mRNA expression da

45 series of samples with common properties and publicly available chemical, metabolic, and environmenta

46 Although rapidly accumulating publicly available ChIP-seq, DNase-seq and ATAC-seq data

47 roteomic data set, as well as a confirmatory publicly available CPTAC/TCGA tumour proteome data set,

48 ysis of mental health laws and policies, and publicly available data about mental health.

49 rs, with supplemental review and analysis of publicly available data and published research findings.

50 A comprehensive analysis of all publicly available data and reports was conducted to eva

51 entually automating the discovery and use of publicly available data at the United States Environment

52 The methodology was tested using publicly available data comparing gene expression profil

53 Publicly available data confirmed expression of IRX1 and

54 rs via quantitative agreement.The study used publicly available data from Look AHEAD (Action for Heal

55 We reviewed publicly available data from Oregon Health Authority rep

56 ons with different ethnic histories and with publicly available data from other populations.

57 We tested our method on publicly available data from several experiments perform

58 This claim is at odds with publicly available data from the Exome Aggregation Conso

59 institutions between 2005 and 2014 based on publicly available data from the NIH Research Portfolio

60 rated hospital.Distances were estimated from publicly available data from the US Census, US News Top

61 Publicly available data from the US Centers for Disease

62 We used publicly available data from WHO's Global Tuberculosis P

63 onal, muscle, and heart tissues, we analyzed publicly available data in these systems.

64 This cohort study involved publicly available data of the top 100 best-selling whol

65 We also reviewed publicly available data regarding funding from the Natio

66 With a publicly available data set we demonstrate that flowVS p

67 Publicly available data sets hold much potential, but th

68 various characteristics extracted from other publicly available data sets, associations were explored

69 s of potential biological significance using publicly available data sets.

70 there are similar problems with use of other publicly available data sets.

71 Functional annotation with publicly available data shows these candidate SNPs most

72 We utilized multiple publicly available data sources to evaluate the associat

73 alytic strategy that can be undertaken using publicly available data to better understand causal mech

74 ring-based, open-source models combined with publicly available data to calculate baseline results fo

75 We used publicly available data to identify predictors of variab

76 Here we use publicly available data tracks from the University of Ca

77 Using publicly available data, a gene coexpression network (GC

78 Analysis of publicly available data, data obtained from government a

79 ailable as a versatile webtool incorporating publicly available data, including the human ENCODE coll

80 Leveraging information from publicly available data, we propose a testing procedure

81 a proprietary process simulator, and use of publicly available data.

82 biological threats can be synthesized using publicly available data.

83 To our knowledge, ADPriboDB is the first publicly available database encapsulating ADP-ribosylate

84 Here we present IMG/VR, the largest publicly available database of 3908 isolate reference DN

85 y Information (NCBI) maintains and curates a publicly available database of annotated genomic, transc

86 countries and the controls derived from two publicly available database of Genotypes and Phenotypes

87 In this randomised, 2 x 2 factorial trial, publicly available databases were used to identify GP pr

88 oposed method, and then apply our model on a publicly available dataset obtained from the Human Micro

89 t loci (meQTLs), chromatin conformation from publicly available datasets (Hi-C and ChIA-PET), and cor

90 efensin family expression in liver cancer in publicly available datasets and found that among all the

91 We took advantage of these publicly available datasets and performed "-omics"-based

92 Based on 44 publicly available datasets and two clinical studies of

93 or Bayesian network (BN) modeling to analyze publicly available datasets for intrachromosomal interac

94 and diffuse intrinsic pontine glioma and 20 publicly available datasets in an integrated analysis of

95 easingly easy to generate, and the number of publicly available datasets in cancer and other diseases

96 Dnajc22 which was further corroborated using publicly available datasets on Hnf4a.

97 ted for 448 cancer cell lines, combined with publicly available datasets to survey a total of 1,056 c

98 Using publicly available datasets, we find that the mouse cloc

99 With two publicly available datasets, we show that flowVS removes

100 M allows open access interactive analysis of publicly available datasets, while manual curation, subm

101 rom The Cancer Genome Atlas (TCGA) and other publicly available datasets.

102 st set composed of 913 examinations from the publicly available Digital Hand Atlas was compared with

103 We analyzed publicly available EAC gene expression datasets to corre

104 Using publicly available eQTL data on 45 different tissues, we

105 amoxifen-associated endometrial cancers with publicly available ERalpha ChIP-seq data in breast tumor

106 ape of genetic variation of F11, we explored publicly available exome-based data obtained from >60 00

107 Approaches include 1) the use of publicly available exposure data in geographic detail, 2

108 We apply our method to two publicly available expression datasets from normal human

109 We collected publicly available expression profiles of patient-derive

110 On two publicly available FC datasets, flowVS stabilizes within

111 Retrospective cross-sectional analysis using publicly available FDA data.

112 Publicly available FDA documents were reviewed to identi

113 Additionally, we use publicly available fetal brain and lung meQTL lists to a

114 ence compounds (PAINS) and aggregators using publicly available filters.

115 Data from these 1,215 tumors are publicly available for discovery and validation.

116 All forms are publicly available for further evolution and free use in

117 rticipants and code used in this article are publicly available for future research.

118 ate misfolding using the functional forms of publicly available force fields.

119 A total of 75 137 publicly available fundus images from diabetic patients

120 Publicly available gene expression and statin sensitivit

121 Current options to mine publicly available gene expression data deposited in NCB

122 Here, we have conducted a study of publicly available gene expression data from three cohor

123 We performed a systematic search for publicly available gene expression data in sepsis and te

124 a set of p53-related pathways, and also on a publicly available gene expression dataset of non-small

125 In silico metaanalysis of publicly available gene expression datasets suggests tha

126 ng in vitro cell lines, clinical samples and publicly available gene expression datasets, we demonstr

127 Extensive experiments using publicly available gene expression profile data sets sho

128 iption factor-binding sites (TFBSs), turning publicly available gene expression samples in Gene Expre

129 standard Bioconductor extension packages and publicly available gene ontology annotations facilitates

130 med metagenes, were identified, validated in publicly available gene-expression cohorts, and correlat

131 We have analyzed the publicly available genome sequences of 36 popular inbred

132 Integration of publicly available genome-wide association data with the

133 this goal, we performed in-depth analyses of publicly available genome-wide datasets.

134 We compiled publicly available genome-wide genotype data on 5,966 in

135 e sequenced in this study) in addition to 10 publicly available genomes, resolved the strains into fo

136 PSMA expression data were extracted from publicly available genomic databases.

137 better use of the ever increasing wealth of publicly available genomic information and to utilize th

138 s in computational biology and the wealth of publicly available genomic information guiding the ident

139 linical Microbiology demonstrates the use of publicly available genomic sequence data to evaluate a P

140 istically link phenotypes to genotypes using publicly available genotype-phenotype correlations such

141 reased SPINK5 gene expression in the skin in publicly available genotype-tissue expression data, and

142 Cohorts were eligible if they had publicly available GEP data from patients' bone marrow p

143 We used 3 publicly available government data sources to estimate a

144 ccRCC patient tumors was identified from the publicly available GSE25540 data set.

145 acterized the human DNA viral community from publicly available gut metagenome data sets from human p

146 STOPGAP draws on a variety of publicly available GWAS associations, linkage disequilib

147 However, publicly available GWAS summary-level data are typically

148 5(4):1002-1011, 2016) and their data is made publicly available here along with a preliminary analysi

149 Publicly available hospital-level data for fiscal year 2

150 1 PD patients with STN DBS was combined with publicly available human connectome data (diffusion trac

151 rent bioimage classification tasks using the publicly available IICBU 2008 database.

152 To this end, we collected the raw data of publicly available immune-related scRNA-seq datasets, al

153 iRNAs using a naive Bayes classifier and its publicly available implementation.

154 Result data were not publicly available in any form for 10% (16 of 163) and 4

155 owVS and the datasets used in this paper are publicly available in Bioconductor.

156 By clustering all tandem MS spectra publicly available in PRIDE Archive, coming from hundred

157 6193 complete bacterial and archaeal strains publicly available in RefSeq.

158 d outcome and genotyping data from the large publicly available International Tamoxifen Pharmacogenom

159 SureChEMBL is a publicly available large-scale resource containing compo

160 Using publicly available leukemic stem cell (LSC) gene express

161 e panel, which provides data for the largest publicly available library of compounds with cytotoxic a

162 a machine learning method to mining through publicly available literature on RNA interference with t

163 Methods We downloaded publicly available machine-readable network data and pub

164 tabolites by spectral library matching using publicly available mass spectra.

165 This retrospective analysis of publicly available Medicare Part B claims data from Janu

166 l observational analysis was performed using publicly available Medicare Physician and Other Supplier

167 Prediction results on publicly available MeRIP-seq datasets are also validated

168 MeMSChem profiling was used to analyze a publicly available metabolomic dataset of coral, algal,

169 horts, was performed in a collection of 2424 publicly available metagenomic samples from eight large-

170 Using publicly available metatranscriptome data in which rRNA

171 e aim of this study was to construct a valid publicly available method for in silico fimH subtyping o

172 underlying molecular mechanisms, we analyzed publicly available microarray data, which revealed a dev

173 ction (CAEBV) that were also compared with a publicly available microarray dataset from a study of Am

174 ata is accumulating, and full utilization of publicly available miRNA data is an important challenge.

175 on both HBase and MySQL Cluster, using large publicly available molecular profiling datasets taken fr

176 is meta-analysis, we studied the database of publicly available nationally reported statistics on imp

177 yze differentially expressed genes using the publicly available networks.

178 -mer RNA baits that are complementary to all publicly available norovirus sequences, with multiple ba

179 /) is a comprehensive database that contains publicly available nucleotide sequences for 370 000 form

180 /) is a comprehensive database that contains publicly available nucleotide sequences for over 340 000

181 A separate questionnaire regarding the publicly available NYS PCI Report was administered to pa

182 ing a systems biologic approach to integrate publicly available omics datasets with histopathologic f

183 A publicly available out-of-the-box, general-domain corefe

184 Typically, gene-sets are obtained from publicly available pathway databases, which contain gene

185 lity of published anti-HIV-1 gRNAs to cleave publicly available patient-derived HIV-1 sequences to in

186 systematic literature review to identify all publicly available phase III randomized controlled trial

187 Data were obtained from the publicly available Philadelphia Neurodevelopmental Cohor

188 By evaluating 20 publicly available predictive tools across genes linked

189 silico estimates of protein abundances from publicly available protein spectra can provide useful st

190 euroMorpho.Org as an example, we discuss how publicly available repositories may benefit data produce

191 ess this hypothesis, we established a large, publicly available repository of well-characterized leuk

192 genetics, and key metabolic parameters as a publicly available resource for investigations in cardio

193 The goal of this publicly available resource is to provide easily accessi

194 sults for 173 diseases/traits from different publicly available resources/consortia and a web interfa

195 Although publicly available results are currently limited, prelim

196 PhenoScanner is a curated database of publicly available results from large-scale genetic asso

197 By analyzing over 23,000 publicly available RNA-Seq data sets, we show that Tradi

198 Using publicly available RNA-seq data, we show that ACE predic

199 The exponential growth of publicly available RNA-sequencing (RNA-Seq) data poses a

200 s methylomes of dry and germinating seeds to publicly available seed development methylomes.

201 comprehensive dataset of newly generated and publicly available sequence data to infer the HCV4a and

202 We screened 45 316 publicly available sequences of hepatitis C virus genoty

203 idated our observations with 18 complete and publicly available sequences.

204 e codon usage tables for every organism with publicly available sequencing data.

205 This analysis was supplemented with a publicly available series of 53 libraries from developin

206 ed compared to our previous server and other publicly available servers.

207 Our publicly available software can help the community asses

208 However, currently no publicly available software exists that can apply all th

209 ive coarse-grained force field, as well as a publicly available software package, named the Mechanoch

210 n many research areas; however, there are no publicly available software tools that implement this me

211 Development and implementation of publicly available software, SAILOR, identified 7361 A-t

212 advent of Google Street View, which provides publicly available street-level imagery with nearly comp

213 distances in outbreak settings, Taxonomer is publicly available through a web-based user interface.

214 hese sequences are expertly curated and made publicly available through an open access website.

215 Seeds for this double-mutant collection are publicly available through the Arabidopsis Biological Re

216 CpGenie is publicly available to assist in identifying and interpre

217 large RNAi and CRISPR repositories that are publicly available to evaluate a novel meta-analysis app

218 Here we present TRAPeS, a publicly available tool that can efficiently extract TCR

219 We have developed a publicly available tool, AxonJ, which quantifies the axo

220 The rapid adoption of a publicly available toolkit featuring routine universal d

221 sal mupirocin-used a prerelease version of a publicly available toolkit.

222 Despite its utility, there are few publicly available tools for aligning optical mapping da

223 We compare our software to other publicly available tools on Rmap datasets and show that

224 there has been a huge rise in the number of publicly available transcriptional profiling datasets.

225 An analysis of publicly available transcriptome data sets collected wit

226 s of CREB-dependent transcription as well as publicly available transcriptomes of neuronal cultures.

227 Using publicly available transcriptomic data from a collated s

228 ined with a machine learning method, to mine publicly available transcriptomic data from melanoma pat

229 With the rapid accumulation of publicly available transcriptomic studies, co-expression

230 a hierarchical classification tree model on publicly available transcriptomics and DNase-seq data an

231 COLOMBOS is a database that integrates publicly available transcriptomics data for several prok

232 l implications of unannotated junctions with publicly available TRAP-seq data.

233 CpGFilter is implemented in R and publicly available under CRAN via the R package 'CpGFilt

234 board approval was waived, as the study used publicly available unidentifiable data.

235 board approval was waived, as the study used publicly available unidentifiable data.

236 The publicly available version includes pre-analyzed sequenc

237 The final created transcriptomes are publicly available via a user friendly Transcriptome bro

238 bined account for only approximately 2.5% of publicly available viral metagenomes.

239 A publicly available web application has been designed to

240 ePlant connects to several publicly available web services to download genome, prot

241 MARRVEL is a publicly available website that integrates information f

242 On a publicly available website without restriction, research

243 c variations of the 294 sequenced genes from publicly available whole-exome or whole-genome sequencin

244 JS-MS is publicly available with a GPLv2 license at github.com/op

245 Our method is flexible, publicly available, and compatible with common genotype

246 Many of these cell lines have publicly available, high-quality DNA, RNA, and drug scre

247 canSAR is a publicly available, multidisciplinary, cancer-focused kn

248 This resource is publicly available, open source, and free, and we invite

249 We make the images and raw data publicly available, providing an initial morphological m

250 By making this new pipeline publicly available, we have created a powerful new tool

251 , code, and results of these evaluations are publicly available.

252 The relevant R package miLineage is publicly available.

253 The datasets used in the paper are publicly available.

254 both tobacco use and HIV test data were made publicly available.

255 tention and thus have information about them publicly available.

256 le-transcriptome datasets generated by us or publicly available.

257 ically developed R code, which has been made publicly available.

258 ty options to keep them private or make them publicly available.

259 s from rice insertional mutant libraries are publicly available.

260 ll datasets and implementations will be made publicly available.

261 re implemented in R package aSPU, freely and publicly available.

262 it requires making original study data sets publicly available.

263 et-up instructions and analysis software are publicly available.

264 ach is that if reference methylomes are not (publicly) available, they will need to be generated once

265 based modularity approach on two independent publicly-available resting-state connectome data sets (t

266 ercially sensitive, they are rarely released publicly by regulators.

267 le brain (WB) of mice using meta-analysis of publicly deposited data across a range of microarray pla

268 VU590 was the first publicly disclosed, submicromolar-affinity (IC50 = 0.2 m

269 We aimed to quantify the scale and scope of publicly funded antibacterial resistance research across

270 cer Institute (NCI) established a network of publicly funded cancer cooperative research groups to sy

271 (telephone and web) to FNP plus usual care (publicly funded health and social care) or to usual care

272 setting was an internal medicine clinic of a publicly funded health system in Alabama, serving a popu

273 s at lower costs from a perspective covering publicly funded healthcare services and productivity imp

274 ccal (MenB) vaccine (4CMenB, Bexsero) into a publicly funded national immunisation programme.

275 ing with opioid use disorder to California's publicly funded treatment facilities.

276 The value of publicly funded treatment of opioid use disorder in Cali

277 Population: Persons initially presenting for publicly funded treatment of opioid use disorder.

278 rus coverage among participants eligible for publicly funded vaccination.

279 arction before and after a hospital had been publicly identified as a negative outlier.

280 Protection Agency limits for discharging to publicly owned treatment works.

281 nt practice, in which there is an absence of publicly provided screening or treatment for HBV.

282 shold GWAS associations, which are often not publicly released.

283 Transplant Recipients (SRTR) is obligated to publicly report data on transplant program and organ pro

284 Mortality rates for the 3 publicly reported conditions were changing at an absolut

285 Publicly reported hospital ratings aim to encourage tran

286 Publicly reported hospital risk-standardized mortality r

287 d patients with cardiac arrest and coma from publicly reported mortality statistics after percutaneou

288 th specific emphasis on how modifications in publicly reported outcome data have influenced their pra

289 es, (2) current patient awareness and use of publicly reported outcome data, and (3) differences in p

290 -2005 (time 1: cardiogenic shock included in publicly reported outcomes), 2006-2007 (time 2: cardioge

291 ing patients with cardiogenic shock from the publicly reported percutaneous coronary intervention (PC

292 of institutional CDI rates because they are publicly reported.

293 for Medicare & Medicaid Services (CMS) began publicly reporting 30-day hospital readmission rates for

294 om adopting IAPT's approach to recording and publicly reporting clinical outcomes.

295 Our publicly searchable checklist includes 124,993 species,

296 l lines and patient tumor specimens offers a publicly searchable foundation to discover new opportuni

297 ne expression constitute a large fraction of publicly shared biological data, and are available in th

298 tens long-term sustainability of research in publicly supported academic health centers.

299 ASCENT2, MAINSAIL, and VENICE were released publicly to be used as training data to predict the outc

300 Using data on publicly traded stocks, we track the performance of 1,06