ライフサイエンスコーパス: publicly available

1 The relevant R package miLineage is publicly available.

2 both tobacco use and HIV test data were made publicly available.

3 The datasets used in the paper are publicly available.

4 tention and thus have information about them publicly available.

5 le-transcriptome datasets generated by us or publicly available.

6 ically developed R code, which has been made publicly available.

7 ty options to keep them private or make them publicly available.

8 s from rice insertional mutant libraries are publicly available.

9 ll datasets and implementations will be made publicly available.

10 re implemented in R package aSPU, freely and publicly available.

11 ing inference in these ion channel models is publicly available.

12 s, nor the diffraction intensities were made publicly available.

13 a analysis, no efficient R implementation is publicly available.

14 All datasets organized on OTO are publicly available.

15 it requires making original study data sets publicly available.

16 et-up instructions and analysis software are publicly available.

17 , code, and results of these evaluations are publicly available.

18 S, PIPE-CLIP, Piranha and Pyicoclip, on four publicly available Ago2-HITS-CLIP datasets and one unpub

19 e carried out a systematic evaluation of ten publicly available AMP prediction methods.

20 We make the paradigm publicly available and describe obstacles and solutions

21 f US organ transplant center performance are publicly available and used for quality oversight.

22 The comparison of the performance of a publicly available and well-understood coreference resol

23 Our method is flexible, publicly available, and compatible with common genotype

24 ity and lack of accepted reporting standards-publicly available animal screening data are only access

25 erpretation of how PDB data relates to other publicly available annotations, we developed a novel dat

26 The class, identified from publicly available antimalarial screening data, was opti

27 The complete dataset has been made publicly available as a comprehensive resource for futur

28 It is publicly available as a MATLAB package.

29 e array data for each protein have been made publicly available as a resource for cardiovascular dise

30 ntic similarity and relatedness measures are publicly available as detailed in the article.

31 Software used in this study are publicly available at the authors' websites.

32 etailed information about these resources is publicly available at the ENCODE portal.

33 Source code, documentation, and examples are publicly available at www.radiomics.io With this platfor

34 d on how exactly to increase and make use of publicly available automated external defibrillators.

35 ased on a formal protocol developed and made publicly available before the conduct of the review; dev

36 wed predefined analysis plans that were made publicly available beforehand, and they all have a stati

37 representations of clinical terms found in a publicly available benchmark dataset manually labeled fo

38 equires basic bioinformatics skills and uses publicly available bioinformatics software.

39 Numerous publicly available biomedical databases derive data by c

40 on T1 and T2 bladder cancer tissues and used publicly available bladder cancer profiling studies to p

41 compared with results obtained using eleven publicly available brain extraction methods.

42 s using the largest set of manually labeled, publicly available brain images in the world and compare

43 s data profiled from tumor samples were made publicly available by the Cancer Genome Atlas (TCGA).

44 Analysis of publicly available cancer data also revealed a significa

45 te its use and interpretation by analyzing a publicly available cancer dataset with more than 20 000

46 MT was evaluated by means of validation in a publicly available cell line data set.

47 The present study has taken advantage of publicly available cell type specific mRNA expression da

48 s: This was a retrospective review using the publicly available Centers for Medicare and Medicaid Ser

49 series of samples with common properties and publicly available chemical, metabolic, and environmenta

50 Although rapidly accumulating publicly available ChIP-seq, DNase-seq and ATAC-seq data

51 roteomic data set, as well as a confirmatory publicly available CPTAC/TCGA tumour proteome data set,

52 ysis of mental health laws and policies, and publicly available data about mental health.

53 Using publicly available data and experimental validation, we

54 rs, with supplemental review and analysis of publicly available data and published research findings.

55 A comprehensive analysis of all publicly available data and reports was conducted to eva

56 entually automating the discovery and use of publicly available data at the United States Environment

57 The methodology was tested using publicly available data comparing gene expression profil

58 Publicly available data confirmed expression of IRX1 and

59 iation studies) completed in 2014 along with publicly available data for predicted miRNA targets.

60 Using publicly available data from inbred mouse strains, we co

61 rs via quantitative agreement.The study used publicly available data from Look AHEAD (Action for Heal

62 We reviewed publicly available data from Oregon Health Authority rep

63 ons with different ethnic histories and with publicly available data from other populations.

64 We tested our method on publicly available data from several experiments perform

65 This claim is at odds with publicly available data from the Exome Aggregation Conso

66 institutions between 2005 and 2014 based on publicly available data from the NIH Research Portfolio

67 rated hospital.Distances were estimated from publicly available data from the US Census, US News Top

68 Publicly available data from the US Centers for Disease

69 We used publicly available data from WHO's Global Tuberculosis P

70 onal, muscle, and heart tissues, we analyzed publicly available data in these systems.

71 This cohort study involved publicly available data of the top 100 best-selling whol

72 We also reviewed publicly available data regarding funding from the Natio

73 With a publicly available data set we demonstrate that flowVS p

74 Analysis of publicly available data sets for samples of human periph

75 Publicly available data sets hold much potential, but th

76 various characteristics extracted from other publicly available data sets, associations were explored

77 s of potential biological significance using publicly available data sets.

78 there are similar problems with use of other publicly available data sets.

79 Functional annotation with publicly available data shows these candidate SNPs most

80 We utilized multiple publicly available data sources to evaluate the associat

81 alytic strategy that can be undertaken using publicly available data to better understand causal mech

82 ring-based, open-source models combined with publicly available data to calculate baseline results fo

83 We synthesized publicly available data to estimate and interpret trends

84 introduce an informatics approach that uses publicly available data to identify chemicals that co-oc

85 We used publicly available data to identify predictors of variab

86 Here we use publicly available data tracks from the University of Ca

87 Using publicly available data, a gene coexpression network (GC

88 Our method, which requires only publicly available data, could transform efforts to trac

89 Analysis of publicly available data, data obtained from government a

90 ailable as a versatile webtool incorporating publicly available data, including the human ENCODE coll

91 valuate molecular diagnostic assays by using publicly available data, online databases, and open-sour

92 Leveraging information from publicly available data, we propose a testing procedure

93 a proprietary process simulator, and use of publicly available data.

94 biological threats can be synthesized using publicly available data.

95 To our knowledge, ADPriboDB is the first publicly available database encapsulating ADP-ribosylate

96 Here we present IMG/VR, the largest publicly available database of 3908 isolate reference DN

97 y Information (NCBI) maintains and curates a publicly available database of annotated genomic, transc

98 countries and the controls derived from two publicly available database of Genotypes and Phenotypes

99 Publicly available database reveals inverse correlation

100 The JPIAMR have developed a publicly available database to document the antibacteria

101 In this randomised, 2 x 2 factorial trial, publicly available databases were used to identify GP pr

102 cross-sectional samples, e.g. retrieved from publicly available databases, and individual-level model

103 oposed method, and then apply our model on a publicly available dataset obtained from the Human Micro

104 t loci (meQTLs), chromatin conformation from publicly available datasets (Hi-C and ChIA-PET), and cor

105 efensin family expression in liver cancer in publicly available datasets and found that among all the

106 We took advantage of these publicly available datasets and performed "-omics"-based

107 Based on 44 publicly available datasets and two clinical studies of

108 or Bayesian network (BN) modeling to analyze publicly available datasets for intrachromosomal interac

109 The new datasets were compared to other publicly available datasets from humans with DS.

110 and diffuse intrinsic pontine glioma and 20 publicly available datasets in an integrated analysis of

111 easingly easy to generate, and the number of publicly available datasets in cancer and other diseases

112 Dnajc22 which was further corroborated using publicly available datasets on Hnf4a.

113 ted for 448 cancer cell lines, combined with publicly available datasets to survey a total of 1,056 c

114 cture Prediction (CASP) experiments, several publicly available datasets, and models generated by our

115 Using publicly available datasets, we find that the mouse cloc

116 With two publicly available datasets, we show that flowVS removes

117 M allows open access interactive analysis of publicly available datasets, while manual curation, subm

118 rom The Cancer Genome Atlas (TCGA) and other publicly available datasets.

119 st set composed of 913 examinations from the publicly available Digital Hand Atlas was compared with

120 s in Asia and Africa, and compared them with publicly available E. coli genomes.

121 We analyzed publicly available EAC gene expression datasets to corre

122 Using publicly available eQTL data on 45 different tissues, we

123 amoxifen-associated endometrial cancers with publicly available ERalpha ChIP-seq data in breast tumor

124 We use the largest publicly available exome sequence database to show that

125 ape of genetic variation of F11, we explored publicly available exome-based data obtained from >60 00

126 two novel clusters, which were confirmed by publicly available experimental RNA-Seq data.

127 Approaches include 1) the use of publicly available exposure data in geographic detail, 2

128 ctively in specific cell types, by searching publicly available expression data for genes with a simi

129 We apply our method to two publicly available expression datasets from normal human

130 We collected publicly available expression profiles of patient-derive

131 On two publicly available FC datasets, flowVS stabilizes within

132 Retrospective cross-sectional analysis using publicly available FDA data.

133 Publicly available FDA documents were reviewed to identi

134 Additionally, we use publicly available fetal brain and lung meQTL lists to a

135 ence compounds (PAINS) and aggregators using publicly available filters.

136 Data from these 1,215 tumors are publicly available for discovery and validation.

137 All forms are publicly available for further evolution and free use in

138 rticipants and code used in this article are publicly available for future research.

139 In this work we review the tools that are publicly available for making region-to-gene association

140 ate misfolding using the functional forms of publicly available force fields.

141 ting networks with user-provided private and publicly available functional genomics and interaction d

142 didate gene set, we integrated our data with publicly available functional genomics data and identifi

143 A total of 75 137 publicly available fundus images from diabetic patients

144 Here, we have used publicly available gene array expression data together w

145 Publicly available gene expression and statin sensitivit

146 e to help researchers use massive amounts of publicly available gene expression data (PED) to make di

147 Current options to mine publicly available gene expression data deposited in NCB

148 Here, we have conducted a study of publicly available gene expression data from three cohor

149 We performed a systematic search for publicly available gene expression data in sepsis and te

150 a set of p53-related pathways, and also on a publicly available gene expression dataset of non-small

151 In silico metaanalysis of publicly available gene expression datasets suggests tha

152 ng in vitro cell lines, clinical samples and publicly available gene expression datasets, we demonstr

153 Extensive experiments using publicly available gene expression profile data sets sho

154 iption factor-binding sites (TFBSs), turning publicly available gene expression samples in Gene Expre

155 standard Bioconductor extension packages and publicly available gene ontology annotations facilitates

156 med metagenes, were identified, validated in publicly available gene-expression cohorts, and correlat

157 study associates geographic coordinates with publicly available genetic sequences at a massive scale,

158 We have analyzed the publicly available genome sequences of 36 popular inbred

159 Integration of publicly available genome-wide association data with the

160 this goal, we performed in-depth analyses of publicly available genome-wide datasets.

161 We compiled publicly available genome-wide genotype data on 5,966 in

162 e sequenced in this study) in addition to 10 publicly available genomes, resolved the strains into fo

163 ate this application of WGS, this study used publicly available genomic data to evaluate a duplex rea

164 PSMA expression data were extracted from publicly available genomic databases.

165 better use of the ever increasing wealth of publicly available genomic information and to utilize th

166 s in computational biology and the wealth of publicly available genomic information guiding the ident

167 linical Microbiology demonstrates the use of publicly available genomic sequence data to evaluate a P

168 istically link phenotypes to genotypes using publicly available genotype-phenotype correlations such

169 reased SPINK5 gene expression in the skin in publicly available genotype-tissue expression data, and

170 Cohorts were eligible if they had publicly available GEP data from patients' bone marrow p

171 We used 3 publicly available government data sources to estimate a

172 ccRCC patient tumors was identified from the publicly available GSE25540 data set.

173 acterized the human DNA viral community from publicly available gut metagenome data sets from human p

174 STOPGAP draws on a variety of publicly available GWAS associations, linkage disequilib

175 However, publicly available GWAS summary-level data are typically

176 In this study, we analyze publicly available GWAS, somatic mutation, and drug targ

177 5(4):1002-1011, 2016) and their data is made publicly available here along with a preliminary analysi

178 Many of these cell lines have publicly available, high-quality DNA, RNA, and drug scre

179 guous United States to provide 132 months of publicly available, high-resolution NO2 concentration es

180 ariation in DNA methylation within two large publicly available HM450 data sets.

181 Publicly available hospital-level data for fiscal year 2

182 1 PD patients with STN DBS was combined with publicly available human connectome data (diffusion trac

183 Based on reprocessing of three large-scale publicly available human data sets, we show that a conse

184 rent bioimage classification tasks using the publicly available IICBU 2008 database.

185 To this end, we collected the raw data of publicly available immune-related scRNA-seq datasets, al

186 iRNAs using a naive Bayes classifier and its publicly available implementation.

187 Result data were not publicly available in any form for 10% (16 of 163) and 4

188 owVS and the datasets used in this paper are publicly available in Bioconductor.

189 By clustering all tandem MS spectra publicly available in PRIDE Archive, coming from hundred

190 6193 complete bacterial and archaeal strains publicly available in RefSeq.

191 ed, well-documented web system that provides publicly available information on genes, biological path

192 From publicly available inhibitors of the human kinome, scaff

193 d outcome and genotyping data from the large publicly available International Tamoxifen Pharmacogenom

194 SureChEMBL is a publicly available large-scale resource containing compo

195 Using publicly available leukemic stem cell (LSC) gene express

196 e panel, which provides data for the largest publicly available library of compounds with cytotoxic a

197 of 54 944 human lincRNAs by drawing on four publicly available lincRNA datasets, and annotated appro

198 a machine learning method to mining through publicly available literature on RNA interference with t

199 Methods We downloaded publicly available machine-readable network data and pub

200 tabolites by spectral library matching using publicly available mass spectra.

201 This retrospective analysis of publicly available Medicare Part B claims data from Janu

202 l observational analysis was performed using publicly available Medicare Physician and Other Supplier

203 Prediction results on publicly available MeRIP-seq datasets are also validated

204 MeMSChem profiling was used to analyze a publicly available metabolomic dataset of coral, algal,

205 With thousands of publicly available metagenomes, these questions should b

206 horts, was performed in a collection of 2424 publicly available metagenomic samples from eight large-

207 Using publicly available metatranscriptome data in which rRNA

208 e aim of this study was to construct a valid publicly available method for in silico fimH subtyping o

209 13 % and 41.6 % more structures, compared to publicly available methods recently used to identify hum

210 Using both simulated and large publicly available methylation datasets, we compare seql

211 underlying molecular mechanisms, we analyzed publicly available microarray data, which revealed a dev

212 ction (CAEBV) that were also compared with a publicly available microarray dataset from a study of Am

213 ental testing distinguish COMBREX from other publicly available microbial genomics resources.

214 ata is accumulating, and full utilization of publicly available miRNA data is an important challenge.

215 on both HBase and MySQL Cluster, using large publicly available molecular profiling datasets taken fr

216 canSAR is a publicly available, multidisciplinary, cancer-focused kn

217 is meta-analysis, we studied the database of publicly available nationally reported statistics on imp

218 araSite (parasite.wormbase.org) contains all publicly available nematode and platyhelminth annotated

219 yze differentially expressed genes using the publicly available networks.

220 -mer RNA baits that are complementary to all publicly available norovirus sequences, with multiple ba

221 /) is a comprehensive database that contains publicly available nucleotide sequences for 370 000 form

222 /) is a comprehensive database that contains publicly available nucleotide sequences for over 340 000

223 A separate questionnaire regarding the publicly available NYS PCI Report was administered to pa

224 ing a systems biologic approach to integrate publicly available omics datasets with histopathologic f

225 All data and software are publicly available on the CircadiOmics web portal: circa

226 This resource is publicly available, open source, and free, and we invite

227 A publicly available out-of-the-box, general-domain corefe

228 Typically, gene-sets are obtained from publicly available pathway databases, which contain gene

229 lity of published anti-HIV-1 gRNAs to cleave publicly available patient-derived HIV-1 sequences to in

230 systematic literature review to identify all publicly available phase III randomized controlled trial

231 Data were obtained from the publicly available Philadelphia Neurodevelopmental Cohor

232 By evaluating 20 publicly available predictive tools across genes linked

233 silico estimates of protein abundances from publicly available protein spectra can provide useful st

234 We make the images and raw data publicly available, providing an initial morphological m

235 members and other stakeholders evaluated 118 publicly available questions and selected 12 correspondi

236 lation450 array in 134 human tissue samples, publicly available reduced representation bisulfite sequ

237 euroMorpho.Org as an example, we discuss how publicly available repositories may benefit data produce

238 ess this hypothesis, we established a large, publicly available repository of well-characterized leuk

239 genetics, and key metabolic parameters as a publicly available resource for investigations in cardio

240 The goal of this publicly available resource is to provide easily accessi

241 sults for 173 diseases/traits from different publicly available resources/consortia and a web interfa

242 based modularity approach on two independent publicly-available resting-state connectome data sets (t

243 Although publicly available results are currently limited, prelim

244 PhenoScanner is a curated database of publicly available results from large-scale genetic asso

245 By analyzing over 23,000 publicly available RNA-Seq data sets, we show that Tradi

246 Using publicly available RNA-seq data, we show that ACE predic

247 The exponential growth of publicly available RNA-sequencing (RNA-Seq) data poses a

248 s methylomes of dry and germinating seeds to publicly available seed development methylomes.

249 comprehensive dataset of newly generated and publicly available sequence data to infer the HCV4a and

250 We screened 45 316 publicly available sequences of hepatitis C virus genoty

251 idated our observations with 18 complete and publicly available sequences.

252 e codon usage tables for every organism with publicly available sequencing data.

253 This analysis was supplemented with a publicly available series of 53 libraries from developin

254 ed compared to our previous server and other publicly available servers.

255 Our publicly available software can help the community asses

256 However, currently no publicly available software exists that can apply all th

257 ive coarse-grained force field, as well as a publicly available software package, named the Mechanoch

258 n many research areas; however, there are no publicly available software tools that implement this me

259 Here we present two complementary, publicly available software tools, KymographClear and Ky

260 Development and implementation of publicly available software, SAILOR, identified 7361 A-t

261 advent of Google Street View, which provides publicly available street-level imagery with nearly comp

262 Results and conclusions: epiDMS is a publicly available system that facilitates management an

263 ach is that if reference methylomes are not (publicly) available, they will need to be generated once

264 The data are publicly available through a dedicated web interface, wh

265 distances in outbreak settings, Taxonomer is publicly available through a web-based user interface.

266 hese sequences are expertly curated and made publicly available through an open access website.

267 Seeds for this double-mutant collection are publicly available through the Arabidopsis Biological Re

268 CpGenie is publicly available to assist in identifying and interpre

269 large RNAi and CRISPR repositories that are publicly available to evaluate a novel meta-analysis app

270 Here we present TRAPeS, a publicly available tool that can efficiently extract TCR

271 We have developed a publicly available tool, AxonJ, which quantifies the axo

272 The rapid adoption of a publicly available toolkit featuring routine universal d

273 sal mupirocin-used a prerelease version of a publicly available toolkit.

274 Despite its utility, there are few publicly available tools for aligning optical mapping da

275 In comparison to many publicly available tools including Galaxy, NEAT provides

276 We compare our software to other publicly available tools on Rmap datasets and show that

277 there has been a huge rise in the number of publicly available transcriptional profiling datasets.

278 An analysis of publicly available transcriptome data sets collected wit

279 s of CREB-dependent transcription as well as publicly available transcriptomes of neuronal cultures.

280 Using publicly available transcriptomic data from a collated s

281 ined with a machine learning method, to mine publicly available transcriptomic data from melanoma pat

282 With the rapid accumulation of publicly available transcriptomic studies, co-expression

283 a hierarchical classification tree model on publicly available transcriptomics and DNase-seq data an

284 COLOMBOS is a database that integrates publicly available transcriptomics data for several prok

285 l implications of unannotated junctions with publicly available TRAP-seq data.

286 CpGFilter is implemented in R and publicly available under CRAN via the R package 'CpGFilt

287 board approval was waived, as the study used publicly available unidentifiable data.

288 board approval was waived, as the study used publicly available unidentifiable data.

289 The publicly available version includes pre-analyzed sequenc

290 The final created transcriptomes are publicly available via a user friendly Transcriptome bro

291 Our analysis drawing on all publicly available viral metagenomes observed a mere 257

292 bined account for only approximately 2.5% of publicly available viral metagenomes.

293 By making this new pipeline publicly available, we have created a powerful new tool

294 A publicly available web application has been designed to

295 ePlant connects to several publicly available web services to download genome, prot

296 ipt Structure and Domain Display (TSDD) is a publicly available, web-based program that provides publ

297 MARRVEL is a publicly available website that integrates information f

298 On a publicly available website without restriction, research

299 c variations of the 294 sequenced genes from publicly available whole-exome or whole-genome sequencin

300 JS-MS is publicly available with a GPLv2 license at github.com/op