ライフサイエンスコーパス: query

1 itive interactors specific for the amk2 gsk3 query.

2 screen with the amk2 gsk3 double mutant as a query.

3 are ranked based on their relatedness to the query.

4 Atlas (TCGA) is provided to allow customized query.

5 r 692.9 (eczema and contact dermatitis) were queried.

6 reoperations within 2, 3, and 12 months were queried.

7 detect on the background of all associations queried.

8 he Cochrane Library (CENTRAL) databases were queried.

9 onduct complex multi-omics, pattern-matching queries.

10 ing network proximity measures for set-based queries.

11 port systematic LINCS cell line analysis and queries.

12 pant queries were longer compared to student queries.

13 the genomic region of interest in positional queries.

14 r researchers to explore the data from large queries.

15 ut elements present in pathways using SPARQL queries.

16 lt types, including BLAST and sequence motif queries.

17 mance enables real-time responses to complex queries.

18 or data integration, retrieval and federated queries.

19 prior to the appearance of the landmark web queries.

20 patients evaluated for pancreatic cysts was queried (1995-2016).

21 Of approximately 1100 miRs queried, 31 increased and 67 decreased more than 2-fold

22 BDSS then queries a metadata repository for curated data transfer

23 ity to correctly infer cell type or state by querying a database of tens of thousands of single cell

24 dose for CT evaluation for kidney stones by querying a national dose registry.

25 roach to identify anti-fibrotic therapies by querying a transcriptome.

26 ver, in this search paradigm the form of the query - a text-based string - is mismatched with the for

27 g data driven classifications searchable and query-able, but fulfilling this potential requires stand

28 ore than they actually do about GM food, and queries about GM facts cause respondents to reassess how

29 intervention) or breastfeeding (control) and queries about infant care practices.

30 Queries across cell-specific databases revealed that a m

31 rimary collagen-secreting cell in liver, and queried against a transcriptomic database that quantifie

32 combine data that allows drug developers to query against and compensate patients for the analysis.

33 In the proposed CUFID-query algorithm, we adopt the CUFID framework and extend

34 In this work, we propose a novel network querying algorithm based on the CUFID (Comparative netwo

35 tection and protein structure prediction, by querying all 8332 PDB40 proteins.

36 EigenTHREADER takes a query amino acid sequence, generates a map of intra-resi

37 A mandatory New York State database was queried and 5,475 patients were identified with degenera

38 metabolomics combined with tailored database queries and cognitive computing for comprehensive exposu

39 a including simple text searches, predefined queries and custom queries created using the interactive

40 that includes a graphical interface for data queries and downloads, alignment programs, command-line

41 Medical Dictionary for Regulatory Activities queries and extended searches were prospectively defined

42 updates and new tools that enhance database queries and improve the submission procedure by utilizin

43 e, web-based interface allows users to enter queries and instantly receive search results as a list o

44 ilities, including chromosome-aware interval queries and read plotting.

45 he National Cancer Institute Physicians Data Query and additional trials.

46 The data query and analysis were performed between November 15, 2

47 s of the rich animal diversity, and tools to query and combine them.

48 New genotype query and display features are added for reference assem

49 o find the strength of association between a query and each concept in the article(s) selected by the

50 Mass, defined as the mass difference between query and library compounds, to shift neutral loss peaks

51 and Prevention's Web-Based Injury Statistics Query and Reporting System database and compared by stat

52 and Prevention's Web-based Injury Statistics Query and Reporting System, data about 25 firearm state

53 and Prevention's Web-based Injury Statistics Query and Reporting System.

54 lementary RNA-RNA interactions between given query and target sequences.

55 s quickly when the sequence identity between query and templates is reduced, while the I-TASSER-MR se

56 momorphic encryption to conceal the sequence query and the genomic region of interest in positional q

57 utilizes the CUFID framework to compare the query and the target networks and to predict the probabi

58 RPF, RPFdb also provides a genome browser to query and visualize context-specific translated mRNA.

59 ing crystal structures are overlaid onto the query and visualized as soon as they are available, enab

60 BioCyc website offers a variety of tools for querying and analyzing PGDBs, including Omics Viewers an

61 e provides a user-friendly web interface for querying and visualizing the details and hierarchy of a

62 lecular-morphological synapse models as user queries, and delivers a volumetric map of the probabilit

63 om diverse backgrounds can easily visualize, query, and explore cancer genomic datasets visually or p

64 eloped comprehensive quality indicator, data query, and monitoring reports.

65 itional evidence on the reliability of these queries as representing clinical diagnoses is based on t

66 icting the future appearance of landmark web queries based on search log signals identified searchers

67 at predict the future appearance of landmark queries based on the search log signals.

68 ntation (discretization) of expression data, query-based biclustering, bicluster expanding, bicluster

69 psiblast PSSMs are built from the query-based multiple sequence alignment (MSA) implied by

70 The National Inpatient Sample database was queried between 2001 and 2011.

71 lizable cloud-based model for organizing and querying biological annotation information.

72 Queries can also be run from the command-line and the da

73 The proposed algorithm, CUFID-query, can accurately detect conserved functional module

74 Querying co-occurrence relationships among RB1, TP53, PT

75 structure and fragmentation mechanism of the query compound.

76 ution of atomic displacements and compares a query computational model with the ensemble.

77 signals identified searchers who later input queries consistent with a lung carcinoma diagnosis, with

78 text searches, predefined queries and custom queries created using the interactive QueryBuilder.

79 We used SurveyMonkey to query critical care medicine physician assistants on dem

80 However, for very noisy and high-dimensional query data, this retrieval criterion turns out to be ver

81 oing retrieval using a denoised model of the query dataset, instead of the original noisy dataset its

82 ents whose models are good for modelling the query dataset.

83 Intuitive pharmacophore queries describing, among others, protein-ligand interac

84 rom the command-line and the database can be queried directly through programming language hooks avai

85 p a web portal to serve these signatures for query, download and visualization.

86 of the dataset to determine relevance to the query entity.

87 eural network based relatedness measures for query expansion in a clinical document retrieval task an

88 created a user-friendly web server for data query, exploration and visualization.

89 METHODS AND We queried expression quantitative trait locus data acquire

90 Pathway Commons webservice allowing users to query, extract and retrieve data and integrate these dat

91 For compression with random query features, smallWig uses a simple block-based compr

92 provides novel pathway datasets and advanced querying features for R users through the Pathway Common

93 he existing folds of CATH or SCOP using both query-fold structure similarities and within-fold struct

94 Nationwide Inpatient Sample (NIS) data were queried for adult (>/=18 years) patients undergoing elec

95 single institution prospective database was queried for all E1 to E4 injuries from 1989 to 2014 usin

96 nited Network for Organ Sharing database was queried for all LT performed in the United States betwee

97 e Military Health System Data Repository was queried for individuals diagnosed with carotid artery st

98 al databases from 4 high-volume centers were queried for IPMNs, with invasive components measuring 20

99 nited Network for Organ Sharing database was queried for isolated pediatric heart transplants from Ja

100 The National Cancer Database was queried for patients undergoing lobectomy for lung cance

101 (MGH), and Johns Hopkins Hospital (JHH) were queried for patients who had undergone resection for pan

102 e national Cancer Data Base 2004 to 2014 was queried for patients with pT2/T3 gallbladder adenocarcin

103 ch Cooperative System inpatient database was queried for patients' >/=18 years who underwent wedge he

104 Medical records were queried for sex, age, method, and follow-up care for ind

105 erto Rico, and the District of Columbia, was queried for single drug exposures in individuals 12 year

106 lanning and Research Cooperative System were queried for stage I to III colon cancer resections from

107 Of web searchers who queried for symptoms related to lung carcinoma, some (n

108 e 1998 to 2012 National Cancer Data Base was queried for T1-3N0-1M0 pancreatic adenocarcinoma patient

109 the sensitivity and specificity of HealthLNK queries for hypertension were 82.4% and 59.4%, for obesi

110 A text-based query for gene name(s) does not work well on datasets wh

111 of the network data, examples of the network querying for addressing particular tasks, and how query

112 Our results, which can be queried freely at dorothea.opentargets.io, offer a broad

113 The Kids' Inpatient Database (KID) was queried from 2000 to 2009 for patients <18 years undergo

114 chnologies, and the database can now also be queried from inside the popular Cytoscape software frame

115 hout other identifiable causes of death, was queried from June 3, 2011, to June 3, 2016, for cases of

116 inary exposure variable) was retrospectively queried from the home medication list of the preoperativ

117 January 1, 2011, and January 31, 2013, were queried from the OPTN database.

118 performing pancreaticoduodenectomy (PD) were queried from the University HealthSystem Consortium data

119 of large-scale anonymized logs of web search queries from millions of people across the United States

120 ed to perform similar functions to the given query functional module.

121 e other key component in this framework, the query gene signature, has been left to users to construc

122 Frequently, for one query gene, multiple orthologous genes are predicted in

123 fulness of DGET for synexpression studies by querying genes with expression profile similar to the me

124 Here, we queried genetically which activities of AdnAB are pertin

125 GEMINI is a fast search engine that uses a query genomic profile to search for similar profiles in

126 However, querying genomic data requires a computer terminal and c

127 The survey queried HCP follow-up related to CeD and included valida

128 ed on data drawn from large-scale web search queries holds opportunity for identifying risk factors a

129 g the sequences of two interacting proteins (queries), iFrag derives a two-dimensional matrix computi

130 etrieves database images most similar to the query image by (1) extracting quantitative image descrip

131 calculating similarity between database and query image descriptors.

132 eigenvalue decomposition (EVD) for every new query image to learn its low dimensional representation.

133 of activin and TGF-beta pathway members were queried in silico using the TCGA data set.

134 an import, create and edit virtual screening queries in an interactive browser-based interface.

135 ogle Trends (GT) searches trends of specific queries in Google and reflects the real-life epidemiolog

136 caffolds rather than compounds, and scaffold queries increasingly abstract from chemical structures.

137 Currently, the BLAST algorithm utilizes a query-indexed approach.

138 mzAccess allows querying instrument data for spectra, chromatograms, or

139 sing the knee meniscus as a model system, we query interstitial cell migration in the context of migr

140 Database query is performed using the HSQC spectrum, and the top

141 A query is then matched with the keywords for MeSH terms,

142 plasma proteome library from DIA data and to query known sequence variants.

143 individual seeds, and the implementation of query-level parallelism.

144 Using multiple computational methods, we queried LINCS-L1000 (Library of Integrated Network-Based

145 , xMSannotator, which includes utilities for querying local or online databases such as ChemSpider, K

146 This combination of data and flexible querying makes MitoMiner a unique platform to investigat

147 its a cost-effective and reproducible way to query many genes at once.

148 etabolite ions that can be used for database queries, metabolome-wide internal standardization, and s

149 The software provides a user interface to query metadata and obtain standardized results in an exp

150 (ii) New functions/analytical tools to query, mine and visualize large-scale gene sequences, an

151 We used BH3 profiling to query mitochondrial regulation of apoptosis and defined

152 For smallWig used in the random query mode, which also supports retrieval of the summary

153 plied by the pairwise alignments between the query model (PSSM, HMM) and the subject sequences in the

154 tools for network analysis, Protein Databank queries, modeling of predicted protein structures and mo

155 Query modules for genotypes, varieties and genes are imp

156 bial genomes, and a new search capability to query more than 700 000 BCs from isolate genomes for clu

157 c genetic arrays (SGA) with gsk3 and amk2 as query mutants, the latter encoding the regulatory subuni

158 iple Saccharomyces cerevisiae GCR assays and query mutations were crossed into arrays of mutants to i

159 ased genome instability caused by individual query mutations.

160 gh keywords but also because a keyword-based query normally returns a long list of hits with many cit

161 Due to its ability to query novel splice sites, JunctionSeq is still able to d

162 elated problems ranging from simple analytic queries of existing measurement data to the more complex

163 of bibliographies of pertinent articles and queries of experts in this field led to 3 additional stu

164 sampling methods) to obtain valid answers to queries of interest.

165 rface is provided for custom advanced SPARQL queries of one or multiple ontologies.

166 Specifically, defined queries of the Beilstein database showed that the molecu

167 inigene panel as a flexible platform for the query of splicing-dependent chromatin modifications.

168 iagnosis of uveitis was determined through a query of the electronic medical record followed by indiv

169 ase, sponsor websites, and direct electronic query of trial contacts and sponsors.

170 web application for efficient and convenient query of whole-genome genotypes and frequencies across t

171 formalization of cell ontologies can enhance querying of data-driven cell-classifications and how ont

172 tes more finely grained data exploration and querying of datasets.

173 ermore it allows for rich and complex visual querying of gene groups in the pangenome.

174 Efficient storage and querying of large amounts of genetic and phenotypic data

175 database to allow fast efficient storage and querying of large volumes of structured genetic and phen

176 man and mouse genomes and allows large scale querying of predicted binding sites.

177 These features enable seamless querying of SNP-Seek across various biological entities,

178 ying webserver with end-points to facilitate querying of the database.

179 ry and software package for fast parsing and querying of VCF and BCF files and illustrate its speed,

180 (designated as institutions A, B, or C) were queried on patients undergoing PD from June 1, 2008, to

181 : In an in-home interview, participants were queried on use of supplements in the preceding 30 days t

182 cientists to browse crosstalk information by querying one or more pathways or molecules of interest.

183 MHSs were queried online.

184 parsimonius set of performant functions for querying ontologies.

185 ce data is searchable in efficient iterative query operations over a large indexed dictionary, for in

186 on's list of scheduled narcotics was used to query opioid use.

187 known functional modules, we show that CUFID-query outperforms the existing state-of-the-art algorith

188 omic, proteomic, bio-imaging) the ability to query over 12 000 analytic tool descriptions integrated

189 egrated list manager allows the user to pass query parameters for further analysis.

190 trate the utility of engineered bacteria for querying pathogen behavior in vivo, and the importance o

191 should be reported for the detected peptide queries, peptides and inferred proteins.

192 ork alignment, specifically to solve network querying problems.

193 rocessing workflow for annotation, curation, query processing, and evaluation.

194 g residues using a graph representation of a query protein structure model.

195 and the overall structure similarity of the query protein to proteins in our dataset, the SP175 data

196 regions from each template and then aligns a query protein with conserved regions only rather than th

197 Using the InhA query protein, an enoyl reductase enzyme in the Mycobact

198 uctures that cannot possibly align well to a query protein, reducing the number of alignments require

199 ting the potential interface regions in both query proteins.

200 Parents responded to queries related to socioeconomic status (SES), family st

201 Finally, CUFID-query removes irrelevant nodes from the querying results

202 d enhanced organization of website pages for query, reporting and individual structure exploration.

203 ure on our browsable website to download any query result, including a downloadable file of the full

204 rser component has been developed to convert query results (available in the JSON format) into SBML a

205 ing for addressing particular tasks, and how query results are converted back to the Systems Biology

206 t references in published articles and parse query results from repositories to determine if the data

207 UFID-query removes irrelevant nodes from the querying results based on the personalized PageRank vect

208 mutagenic processes can be identified in any query sample with subsequent comparison to mutational pr

209 ich tends to anchor the PSSM to the original query sequence and slightly increase target percent iden

210 abase hit to the taxonomic assignment of the query sequence is weighted by a Bayesian posterior proba

211 When the original query sequence residues are inserted into gapped positio

212 ancestors of multiple database hits for each query sequence, and further classification reliabilities

213 Starting from a query sequence, ThreaDomEx first threads it through the

214 quence similarity of the database hit to the query sequence.

215 e phenotype and its relative severity from a query sequence.

216 ed search facilities to return alignments of query sequences against multiple sequence alignments; th

217 calculates true sequence similarity between query sequences and database hits using pairwise sequenc

218 After users input query sequences, it searches gRNA by 3' protospacer-adja

219 nce database is required for aligning to the query sequences, making our method easily applicable for

220 nments based on multiple database matches to query sequences.

221 es from the compendium to accurately model a query set of differentially expressed genes, was tested

222 atch corresponding neutral loss peaks in the query spectrum.

223 The managed care network was queried starting in 2009, and data analysis was conducte

224 TM-score>0.7) structures in the PDB for each query structure, usually in less than 60s.

225 software code that needs to be developed to query such data by an order of magnitude.

226 ironment alter the intrinsic dynamics of the query systems.

227 ies and integrate them with data-driven cell query systems.

228 text and sequence searches to sophisticated queries that apply 3D structural constraints.

229 We identified people who issue special queries that provide strong evidence of a recent diagnos

230 oma, some (n = 5443 of 4813985) later issued queries that provide strong evidence of recent clinical

231 ethods for processing of set-based proximity queries that take advantage of sparse local proximity in

232 We queried the claims database of a large health insurer fo

233 We retrospectively queried the deidentified database of patients hospitaliz

234 We queried the Healthcare Cost and Utilization Project Stat

235 Next, we queried the transcriptomes and inferred dynamic Bayesian

236 We queried the UNOS database (United Network for Organ Shar

237 e cheminformatics tools: BinVestigate, which queries the BinBase gas chromatography-mass spectrometry

238 It is accompanied by a web-based tool that queries the database for associations with user-specifie

239 e elemental formulas, which are then used to query the "metabolic in-silico expansion" database (MINE

240 To query the association of cytotoxic, anti-inflammatory, a

241 However, our ability to explore and query the content of diverse omics data is very limited.

242 ata, populate it with data from NCBI, easily query the data, and obtain visual summaries.

243 set activity pattern of interest, users can query the expression compendium to systematically identi

244 rate was unaffected, thereby allowing us to query the general effects of morphology on cellular phys

245 nd GRIP1 in the EPH/EFN signalling system to query the International Blood Pressure Consortium datase

246 Users can query the status of their genomic variants for over 1658

247 Users can find assemblies of interest by querying the Assembly Resource directly or by browsing a

248 MitoMiner provides multiple ways of querying the data including simple text searches, predef

249 icient random access capabilities, rendering querying the database for particular variants and/or ind

250 face for configuring the data import and for querying the database.

251 These results demonstrate the value of querying the enzymatic repertoires of closely related mi

252 and alignments including whole genomes, and querying the JASPAR database.

253 Querying the Kinase Inhibitor Resource database revealed

254 Finally, term ranking by querying the LSI space with a group of miRNAs enabled an

255 For a batch of queries, the multithreaded muBLASTP achieves up to a 5.7

256 set of genes known to be linked with a given query, then it integrates the learning methodology of En

257 We queried these 20 kinases in a secondary in vivo screen u

258 Users can query these data collections focusing on end points of i

259 application programming interface (API) for querying these data.

260 materials was established by a benchmarking query through several Integrated Delivery Network and Gr

261 ces achieves an [Formula: see text] expected query time in the limit.

262 me Atlas project and show that it achieves a query time that scales as the logarithm of the number of

263 ure/Dynamic Host Configuration Protocol were queried to assess changes in wait times for elective gen

264 These databases are constantly updated and queried to extract information such as the common varian

265 aps is difficult, and many resources must be queried to find potentially significant genotype-phenoty

266 The National Inpatient Sample database was queried to identify patients 18 years or older who were

267 ar, and clinical traits that can be directly queried to interrogate and refine the regulatory framewo

268 The National Cancer Data Base was queried to select patients diagnosed with stage pT3-4Nx-

269 rom bibliographies of pertinent articles and queries to experts in this field.

270 the population BWT to carry out nonreference queries to search for the presence of all known viral ge

271 e set of P. ostreatus secreted proteins as a query to search their counterparts in other fungal genom

272 ools, namely an analysis tool, BiNChE, and a query tool for the ontology, OntoQuery.

273 G is a user-friendly database generation and query tool that adapts to the supplied data to produce a

274 All the expression-based query tools have undergone a substantial improvement, ov

275 EmpPrior efficiently queries TreeBASE to find data that are similar to focal

276 ponents: EmpPrior-search, written in Java to query TreeBASE, and EmpPrior-fit, written in R to parame

277 kiPathways content using a variety of SPARQL query types and third-party resources, such as the Open

278 NBLAST supports additional query types, including searching neurons against transge

279 Screening additional families and querying unsolved CMT2 exomes, we identified the p.R252W

280 tegrated with experimental data which can be queried using a flexible graph database.

281 Viral sequences can be queried using a variety of associated metadata, includin

282 The LINCS-CLO view information can be queried using SPARQL scripts.

283 ed algorithm that uses spectral libraries to query, validate and quantify peptidoforms in DIA data se

284 tigs from the same habitat or samples as the query viruses.

285 ing RDF triple store technology and supports query, visualization and linkage of ontology terms.

286 A researcher can browse, query, visualize and compare the response patterns of ge

287 ar graph, an annual and clear seasonality of queries was found in all countries apart from Cyprus, Es

288 nterface, dynamic visualization and advanced queries, we also believe MMiRNA-Viewer offers an intuiti

289 On average STD clinic participant queries were longer compared to student queries.

290 cases, out of 5, for ~80 % and ~60 % of the queries when a match was defined as the tissue similarit

291 We queried whether gut microbes, a known source of inter-in

292 atory sites (22-mutant), thus allowing us to query whether regulation requires their contribution in

293 lue models, taking advantage of the types of queries which are specific for the high-throughput molec

294 Such database queries (which can be performed using our web server) wi

295 Here, we queried whole-genome sequence data from 1,916 patients a

296 loaded from the scientific public domain was queried with bioinformatics tools to generate an initial

297 It was designed to support queries with any levels of complexity.

298 the services to quickly and easily formulate queries with the services and obtain dynamically generat

299 son Reuters Web of Science All Databases was queried without year or language restriction.

300 also allows the user to pose fast and useful queries without decompressing the entire file.