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1 DNase I hypersensitive sites (i.e., putative regulatory regions).
2 nding sequence(s) (DBS) in the TSLP promoter regulatory region.
3 E-boxes within the Ppargamma transcriptional regulatory region.
4 s reduced the promoter activity of the MTHFR regulatory region.
5 noncoding DNA, which pinpointed a Cdkn2a cis-regulatory region.
6 e presence of a multitude of CBEs in the Scr regulatory region.
7 cally induced removal of the auto-inhibitory regulatory region.
8 t effect on pseudogene formation and loss of regulatory regions.
9 antly lower near 3' UTRs, the area rich with regulatory regions.
10 es in mutation rates in coding sequences and regulatory regions.
11 ons that form distinct recurrent patterns at regulatory regions.
12 n many cell types and detecting differential regulatory regions.
13 to test for the presence of transcriptional regulatory regions.
14 ys and reveals 5hmC localization in putative regulatory regions.
15 ns can be further utilized to discover novel regulatory regions.
16 RRs associate with functionally relevant cis-regulatory regions.
17 mic locus, including endogenous promoter and regulatory regions.
18 erence of advantageous heterozygosity at cis-regulatory regions.
19 egulations by discovering previously unknown regulatory regions.
20 fic variation on top of a shared core of CLL regulatory regions.
21 are controlled by specific motifs in compact regulatory regions.
22 DDLPS, with increased H3K9me3 at associated regulatory regions.
23 a useful model for functional studies of AD regulatory regions.
24 exome sequencing, and variants in non-coding regulatory regions.
25 t genes by decreasing STAT3 binding to their regulatory regions.
26 nal modifications that mostly occur at these regulatory regions.
27 alterations in developmental genes and their regulatory regions.
28 ethylation signatures characteristic of gene regulatory regions.
29 y annotations to identify point mutations in regulatory regions.
30 ding directly to the TA box in each of their regulatory regions.
31 on by altering the copy number of intergenic regulatory regions.
32 he genome, especially within genes and close regulatory regions.
33 ific DNA motifs, usually located at the gene regulatory regions.
34 we found that XAL2 is able to bind the TFL1 regulatory regions.
35 ine and 5-hydroxymethylcytosine at Bdnf gene regulatory regions.
36 c genes by binding to shared transcriptional regulatory regions.
37 modeling deacetylase (NuRD) complex to Pdcd1 regulatory regions.
38 sing H3K27me3 deposition at critical genomic regulatory regions.
39 the Isl1/Lhx3 pair initially engage distinct regulatory regions.
40 cinomas (PDAs) and identify commonly mutated regulatory regions.
41 l promoter regions, but vary in the upstream regulatory regions.
42 f rare naturally occurring mutations in gene-regulatory regions.
43 Ig heavy chain (IgH) expression, the IgH 3' regulatory region (3'RR) controls multiple transcription
44 e constant genes and is controlled by the 3' regulatory region (3'RR) in a stimulus-dependent manner.
46 mputational tools fail to reliably determine regulatory region accessibility from the analysis of the
47 thioredoxin-binding domains and the central regulatory region actively primes MKK6, a key ASK1 subst
48 m one set of targets to another, controlling regulatory region activity and gene expression as cell d
49 urthermore, we have shown that the predicted regulatory region adjacent to rs11855415 acts as a bidir
51 dification, particularly methylation of gene regulatory regions, also acts to shape human brain funct
53 binding to multiple enhancers in the Igh 3' regulatory region and Aicda locus, E-proteins regulated
54 induced AhR and MTA2 recruitment to the Stc2 regulatory region and induced Stc2 gene expression, whic
55 minantly (14 of 15 patients) in the negative regulatory region and Pro-Glu-Ser-Thr-rich domains, the
57 ion of Lys-27 on histone H3 at the Tgf-beta1 regulatory region and thereby maintains epigenetic silen
60 Mechanistically, E2A-PBX1 bound promoter regulatory regions and activated the transcription of it
61 the presence of Atoh1 binding sites in their regulatory regions and by analyzing Atoh1 ChIP-seq datas
62 te that MntR binds to both the mneP and mneS regulatory regions and directly activates transcription
63 yclopedia of DNA Elements (ENCODE)-annotated regulatory regions and had methylation profiles that med
64 ogether these data add multiple novel distal regulatory regions and pathways to the control of PD-1 e
65 of folding, fully extended fibers containing regulatory regions and promoters, and fibers condensed u
66 Given that most GWAS hits are in putative regulatory regions and transcript abundance is physiolog
67 te that EBNA1 binds directly to the promoter regulatory regions and upregulates the transcription of
68 on trans-activation through 5' conserved cis-regulatory regions and, in particular, whether the mamma
69 ch1) genes by directly binding to their gene regulatory regions, and eventually contributes to pathwa
71 volutionary forces acting on genes and their regulatory regions, and provide a general resource for r
72 nregulation of synaptic plasticity genes and regulatory regions, and upregulation of immune response
73 atasets provide the most comprehensive human regulatory region annotation to date, and our approach a
74 ta resources include evidence-based gene and regulatory region annotation, genome variation and gene
75 genetic variation in many non-coding genomic regulatory regions are known to impart risk of colorecta
77 We show that P-DMRs preferentially occur at regulatory regions, are characterized by intermediate le
79 o the latency promoter and a known long-term regulatory region as important elements for vigorous tra
80 n by targeting TATA boxes in transcriptional regulatory regions as well as the poly adenine (poly (A)
81 hancer Emu with proximal 5' DH region and 3' regulatory regions as well as with Pax5-activated interg
82 t aberrantly methylated CpGs are enriched in regulatory regions associated with MYC protein motifs an
83 s located in their 5' regulatory region (the regulatory region-associated microsatellite, RRAM) that
84 al inactive ZF-TFs targeting within the same regulatory region bind as well as the most active ZF-TFs
86 e significantly underrepresented in promoter regulatory regions but significantly overrepresented in
87 inding the TATA boxes in the transcriptional regulatory region, but it promotes higher levels of expr
88 repressor complex was absent from the CD133-regulatory region, but was present in the MCF-7 and prim
89 (MEF2D) binds and activates retina-specific regulatory regions by cooperative interaction with the t
92 regions, and CpG dinucleotides within the 5' regulatory regions, confirmed hypomethylation of all thr
93 e that elt-2 is controlled by three discrete regulatory regions conserved between C. elegans and C. b
94 tion in accessibility of progenitor gene cis-regulatory regions consistent with the reduction in thei
95 an N-terminal kinase domain and a C-terminal regulatory region consisting of a approximately 100-resi
96 domain, followed by a likely posttranslation regulatory region consisting of high serine and threonin
99 n signals in the HLA-D region identified two regulatory regions containing 3562 polymorphisms that mo
102 Interestingly, the PD-1 transcriptional regulatory region continued to remain unmethylated in th
103 for the functional organisation of TFL1 cis-regulatory regions, contributing to our understanding of
104 Super-enhancers are an emerging subclass of regulatory regions controlling cell identity and disease
105 between transcription factors (TFs) and cis-regulatory regions (CRRs) characterized by nucleosome-de
106 making the positioning of nucleosomes within regulatory regions crucial to the regulation of gene exp
107 al analysis of five representatives of these regulatory regions demonstrated direct binding of OpaR i
109 laria, the nucleosome positioning profile of regulatory regions deserves particular attention because
110 essibility at enhancers, promoters and other regulatory regions do not correlate with changes in nucl
114 and direct binding of pSmad1/5/8 to the Hcn4 regulatory region further confirm the Shox2-BMP genetic
115 mperature-dependent unfolding of Hsf1 in the regulatory region happening concomitant to tighter packi
117 y, and for decades the proximal Il2 upstream regulatory region has served as a paradigm of tissue-spe
119 posite DNA methylation patterns in the opvAB regulatory region: (i) in the OpvAB(OFF) state, GATC1 an
122 uencing of the ventral dentate gyrus, a mood-regulatory region, identified metabolic factors as key m
123 Orthogonal genomics analysis of reprogrammed regulatory regions identifies individual drug-induced ep
124 sposons into the genome can disrupt genes or regulatory regions, impacting cellular function, so for
126 says showed that AioR interacts with the mcp regulatory region in vivo and in vitro, and the precise
128 ularly evident in HTS assays for identifying regulatory regions in DNA (DNase-seq, ChIP-seq, FAIRE-se
129 ociated variants are preferentially found in regulatory regions in immune cells, particularly CD4(+)
130 eferential mapping of associated variants to regulatory regions in kidney but not extra-renal tissues
131 TF agnostic model for identifying functional regulatory regions in potentially any sequenced genome.
135 e enrichment of allergy SNPs falling in gene regulatory regions in various cells using Encode Roadmap
136 ediated in vivo exchange of epitope tags (or regulatory regions) in the ORF library strains, which fu
137 p3 gene expression are controlled by several regulatory regions including two enhancers in the conser
139 AB proteins, also show widespread binding to regulatory regions, indicating that the human genome con
140 we provide evidence that variation at these regulatory regions is likely to also influence gene expr
142 of the expansion segment 7 (ES7), a putative regulatory region located on the surface of the 60S ribo
143 g that efficient binding within one of these regulatory regions may be necessary but not sufficient f
145 they are not designed to identify individual regulatory regions mediating risk or the genes under the
147 rized by rearrangements within the noncoding regulatory region (NCCR) and 1 point mutation, S267L in
148 e, and that mutations in melanocyte-specific regulatory regions near DDB1/TMEM138 correlate with expr
149 Consistent with gene expression changes, regulatory regions near genes involved in inflammatory r
151 ar domain (ICD3), and sequenced the negative regulatory region (NRR) and PEST (proline, glutamate, se
152 Unfolding of the extracellular negative regulatory region (NRR), enabling successive proteolysis
153 analysis revealed OpaR binding sites in the regulatory region of 55 carbon transporter and metabolis
154 ast, if PU.1 is bound at the transcriptional regulatory region of a gene during differentiation, PRC2
157 We characterize an interaction between the regulatory region of CFTR and calmodulin, the major calc
158 ssions, we identify a cis-regulatory module, Regulatory region of DUO1 (ROD1), which replicates the e
159 map to the coding region of sigH and in the regulatory region of kinA, encoding one the sensor kinas
160 indings that CTAR3 is a distinct functioning regulatory region of LMP1 and confirm that LMP1-induced
162 transcription and encompassing the noncoding regulatory region of mtDNA in human and murine cells and
164 ide polymorphisms (SNPs) (rs12641001) in the regulatory region of SPP1 exhibited a statistically sign
167 ate inhibits Tet-mediated demethylation of a regulatory region of the antimetastatic miRNA cluster mi
168 The GusR-specific DNA operator site in the regulatory region of the E. coli GUS operon is identifie
169 ters (PR1-1, PR1-2 and PR1-3) within the PR1 regulatory region of the Escherichia coli kps capsule ge
170 to interact with genomic elements within the regulatory region of the gene encoding the differentiati
172 detailed functional characterization of the regulatory region of the medaka fish Six3.2 ortholog and
173 ranscriptional co-factor FOG1 (ZFPM1) to the regulatory region of the mouse Gli1 gene, repressing the
175 rease in the amount of open chromatin at the regulatory region of the p53 and p21 (Cdkn1a) genes.
176 the inhibition of EspR binding at the espACD regulatory region of the phoP mutant strain because of P
177 spontaneous sorghum mutant and suggested the regulatory region of the SbCAD2 can be a target site for
178 ow that ATF3 is bound to the transcriptional regulatory regions of >30% of differentially expressed g
179 Here, we demonstrate that SOX11 binds to regulatory regions of 2 important genes for microenviron
182 lerosis is complex and that variation in the regulatory regions of associated genes may be important
184 is mediated through direct interactions with regulatory regions of cardiogenic genes, rather than reg
185 sal recruits the CBP/p300 coactivator to the regulatory regions of defined target genes in the presum
186 ifs of transcription factors in the upstream regulatory regions of differentially expressed lncRNAs,
187 sequence is overrepresented in the upstream regulatory regions of GA-induced and DELLA-repressed tra
188 s in methylation levels within promoters and regulatory regions of genes involved in TLR signaling in
189 asizing how the recent identification of cis-regulatory regions of genes within the eggshell patterni
190 Med15 can be independently recruited to the regulatory regions of heat shock factor 1 (Hsf1)-activat
193 lancing selection are enriched in active cis-regulatory regions of immune cells and epithelial cells,
194 role in mitosis; however, H3S10ph also marks regulatory regions of inducible genes in interphase mamm
195 aling and dissociated BRD4 from chromatin at regulatory regions of insulin receptor and EGFR family R
196 gulatory Build has been revamped to identify regulatory regions of interest and to efficiently highli
198 ition to shared target genes, Hoxa1 binds to regulatory regions of Nanog, and conversely Nanog binds
200 mary transcription factors recruiting SCC to regulatory regions of pluripotency genes and identify th
202 Using ncdDetect, we screened non-coding regulatory regions of protein-coding genes across a pan-
204 for directing CTCF to the promoter proximal regulatory regions of target genes across the genome, pa
208 e activities are then interpreted by the cis-regulatory regions of the genes involved in cell differe
210 disorder, variation that affects non-coding regulatory regions of the genome is likely to play an im
211 ylated regions preferentially affected known regulatory regions of the genome, specifically overlappi
212 -deficient mouse tissues, that KLF3 occupies regulatory regions of the Lgals3 gene, and that KLF3 dir
214 s, we further detected PBX1 binding to known regulatory regions of the neuron-specific genes Dcx and
215 e identify and functionally characterize the regulatory regions of the P. falciparum gene PF3D7_12347
217 shared by the predicted distal and proximal regulatory regions of the same RPGs, a likely general me
219 We also tested mutations in the coding and regulatory regions of the virus, and chimeric haemagglut
221 occupancy of the Rad4-Rad23 complex from the regulatory regions of these genes, enabling their induct
223 to the RAG1 promoter as well as directly to regulatory regions of transcription factors previously i
225 k loci of genome-wide significance at likely regulatory regions on chromosomes 13q22.1 (rs11841589, n
227 of aggregating motifs defined by gene exons, regulatory regions, or genome-wide sliding windows.
231 h chromatin unpacking in the WRKY6 and PDF12 regulatory regions, primed WRKY6 expression, unprimed PD
232 We propose a model in which the central regulatory region promotes ASK1 activity via its pleckst
233 Identification of all human genes and their regulatory regions provides the essential framework for
234 predict activity of evolutionarily divergent regulatory regions, providing insights into spatial rela
236 not fall within gene coding regions, but in regulatory regions, rendering their interpretation diffi
237 nalysing and predicting the evolution of cis-regulatory regions requires an understanding of their po
240 ments, we adapt the self-transcribing active regulatory region sequencing (STARR-seq) strategy, a hig
241 tion sequencing and self-transcribing active regulatory region sequencing of enhancer profiles reveal
243 essed proteins contain within their proximal regulatory regions sites that are bound by SOX6 accordin
244 ells, indicating that condition-specific RPG regulatory regions still need to be discovered and inves
246 Variations in DNA methylation, especially in regulatory regions such as promoters and enhancers, are
247 ide-resolution dissection of transcriptional regulatory regions, such as enhancers, but only few regi
248 looping-mediated association with the IgH 3' regulatory region super-enhancer and leads to decreased
250 In parallel, we performed global mapping of regulatory regions, termed enhancers, to gain mechanisti
251 ting of a 105-nucleotide insertion in the qk regulatory region that decreases qk transcription but do
252 ions between genetic variants within the cis-regulatory region that influence gene expression after a
253 methyltransferase domain, a large N-terminal regulatory region that is composed of an RFTS (replicati
255 nslated region (UTR) of mRNAs is the primary regulatory region that mediates post-transcriptional con
256 parse in genes, reflecting the clustering of regulatory regions that act at short and long-range, whi
257 regions for the presence of transcriptional regulatory regions that are active in a specific cell ty
258 anscriptional start sites and other putative regulatory regions that are differentially accessible in
259 Our findings of transcribed uncharacterized regulatory regions that contain CRSs support their RNA-m
260 sites in ASXL1 mutated MF cases are found in regulatory regions that could be associated with aberran
262 within coding regions, ignoring those within regulatory regions that may contribute to gene expressio
263 nscription factors (TFs), the noncoding gene regulatory regions that they bind to, and the genes whos
264 Many of these regions exhibit hallmarks of regulatory regions that were active earlier in neuronal
265 hic microsatellite locus located in their 5' regulatory region (the regulatory region-associated micr
266 ain is highly conserved, the function of the regulatory regions (the N terminus and the low-complexit
267 TFL1 expression is based on distinct cis-regulatory regions, the most important being located 3'
268 l enrichment of disease risk alleles on gene regulatory regions, they are not designed to identify in
269 hich preferentially integrate near genes and regulatory regions; thus, insertional mutagenesis is a s
270 million nucleotides spanning 15,000 putative regulatory regions tiled at 5-nucleotide resolution in t
271 ce that EtrB directly interacts with the ler regulatory region to activate LEE expression and promote
274 kinase S6K1 and Polycomb proteins at genomic regulatory regions to repress expression of anti-adipoge
276 is linked to several characteristics such as regulatory region type, motif sequence degeneracy, DNase
277 dR bound to the promoter DNA of rpoS and the regulatory region upstream of bosR via AT-rich TAAAATAT
278 R affinity at least 40-fold for the extended regulatory regions upstream of the liaFSR and liaXYZ ope
281 tion within the 2,800-bp E5a-E5b-L1-upstream regulatory region was initially studied in 181/207 (87.4
282 ed that GATA1s binding at specific erythroid regulatory regions was impaired, while binding at many n
284 are, highly sequence-conserved, IEC-specific regulatory regions, we discovered an ancient enhancer up
286 han 86.6% of these computationally predicted regulatory regions were partially corroborated by indepe
287 bind at RAREs in the Hoxa1 and Cyp26a1 gene regulatory regions, whereas only HDAC1 binds at the RARb
288 parted from standard practice by identifying regulatory regions which replicate across samples and co
289 nd upregulation of immune response genes and regulatory regions, which are targeted by factors that b
290 roach we were able to identify two novel cis-regulatory regions, which direct Eya1 expression to the
293 ethods for WGBS are mainly designed for gene regulatory regions with multiple under-methylated CpGs (
294 2.2 x 10(-7)), and were mostly in introns or regulatory regions with predicted effects including prot
295 lements, cis- regulatory module, in the CLV3-regulatory region, with different affinities and conform
297 cleotide polymorphisms (SNPs) are located in regulatory regions within introns or in regions between
298 and histone methylation marks identified DNA regulatory regions within the Cd44, Cdkn1a, and Cdkn2b g
299 ies through STAT3, whose binding to putative regulatory regions within the MIR29 gene is enriched by
300 o and in vitro analyses demonstrate that the regulatory regions within these two promoters contain th
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