ライフサイエンスコーパス: repository

1 ire collection of the Leibniz Institute DSMZ repository).

2 lable at the Comprehensive R Archive Network repository.

3 2013, posting sequencing data into a public repository.

4 example code are available in an open online repository.

5 m analysis of the VICTOR data set and sample repository.

6 l data from source documents in the Document Repository.

7 sults from the Gene Expression Omnibus (GEO) repository.

8 del encoding standards, software and a model repository.

9 Source code is available in a public GitHub repository.

10 and processed data in a publicly accessible repository.

11 on is available at the aforementioned GitHub repository.

12 cting similar signatures from the entire GEO repository.

13 urces and exchange models via a public model repository.

14 n 15 plugins available in the central plugin repository.

15 density functional theory (DFT) calculation repository.

16 NAM is an R package available in the CRAN repository.

17 f cancer from The Cancer Genome Atlas (TCGA) repository.

18 megranate from the National Clonal Germplasm Repository.

19 ata sets from the Cancer Genome Atlas (TCGA) repository.

20 IPHER.cee.wisc.edu and from the Bioconductor repository.

21 ncer cell lines and the global cancer genome repository.

22 s of the Greater Cincinnati Pediatric Clinic Repository.

23 nd Outcomes for Neurotrauma-SCI (VISION-SCI) repository.

24 deleting records by making commits to a git repository.

25 31, 2014, were obtained from a clinical data repository.

26 is publically available via the bioconductor repository.

27 Base database, the primary microRNA sequence repository.

28 y disposed and scheduled for disposal in the repository.

29 nd other depositors into a single electronic repository.

30 biomarkers recorded in the centralized data repository.

31 provide the foundation for a global TBM data repository.

32 lable at github.com/aromanel/EthSEQ and CRAN repository.

33 dependently using the Systematic Review Data Repository.

34 ifest of datasets stored in a remote storage repository.

35 tional Heart, Lung, and Blood Institute data repository.

36 ilable as an R package at the CRAN R package repository.

37 s is available as an R package from the CRAN repository.

38 code that is staged for download on a public repository.

39 he Massbank of North America (MoNA) spectral repository.

40 ity Purification (TRAP) and CREB-target gene repositories.

41 ata are accumulating exponentially in public repositories.

42 n of data and materials by using independent repositories.

43 ation and dissemination of well-curated data repositories.

44 of Np in the near-field of radioactive waste repositories.

45 t in the safety assessments of nuclear waste repositories.

46 ined and submitted to the available sequence repositories.

47 cations, such as landfill liners and nuclear repositories.

48 owing numbers of samples deposited in public repositories.

49 tify inhibitors from existing small molecule repositories.

50 from near surface waste sites and geological repositories.

51 tasets as well as those obtained from public repositories.

52 rginine catabolism into alternative nitrogen repositories.

53 integrated from well-established, community repositories.

54 ther locally stored or available from public repositories.

55 carcinoma research databases and biospecimen repositories.

56 ta sets derived from three metabolomics data repositories.

57 We obtained from public data repositories a collection of breast cancer gene expressi

58 Aber-OWL consists of an ontology repository, a set of web services and web interfaces tha

59 available through the Bioconductor R package repository along with source code and a tutorial vignett

60 s are freely available both through standard repositories and a user-friendly Web interface.

61 ion data integrated from 32 different public repositories and a web interface featuring a set of comp

62 ally searched five databases and three trial repositories and contacted an international panel of exp

63 tudies Program have also enhanced their data repositories and data sharing resources.

64 ched to the D. melanogaster genome in public repositories and individual laboratories, the replacemen

65 the utility of these data, the diversity of repositories and options available for sharing such data

66 rs (n = 11), normal liver tissue from public repositories and patients without liver disease (n = 11)

67 ,000 bacterial genomes from all major genome repositories and put them in a fast and easy-to-use data

68 arched two public gene expression microarray repositories and retained datasets that examined clinica

69 tensive than currently represented by public repositories and that there is a significant number of l

70 platform that indexes genomic data stored in repositories and thus enables researchers to search for

71 assess analytical methods, document and data repositories and training opportunities were harmonized

72 pipeline to 708 RNA-seq samples from public repositories and verified the accuracy of our prediction

73 ta set is publicly available via public data repositories and via http://www.braineac.org/.

74 elective sorption of the contaminants in the repository and (2) long-term chemical stability in hyper

75 dered non-pathogenic species, a well-defined repository and analysis platform is needed to hold the Y

76 MetaCycle package is available on the CRAN repository and GitHub.

77 extracted from an institutional patient data repository and included in a data repository maintained

78 f Diabetes and Digestive and Kidney Diseases Repository and included in our analyses: 2450 for model

79 les are available on in the Bitbucket public repository and many of the tools are demonstrated on a p

80 sed search capabilities against the compound repository and patent document corpus; given the wealth

81 te of Diabetes and Digestive Kidney Diseases repository and tested for seven markers of tubular prote

82 ored in standardized formats, hosted in open repositories, and integrated with simulations.

83 of California, Irvine (UCI) Machine Learning Repository, and a clinical data set built to determine s

84 stitute of Neurological Disorders and Stroke Repository, and an ALS specialty clinic in Helsinki, Fin

85 gent production tracking system, screen data repository, and portal to the community.

86 within any Galaxy framework via the toolshed repository, and we also provide source code for command

87 projects; the development of sample and data repositories; and a policy framework for sharing and acc

88 The repository archives plasmids generated by scientists, co

89 The EuroFIR Document and Data Repositories are being developed as accessible collectio

90 tive electron scattering revealed that these repositories are equivalent to molar concentrations of d

91 This file, along with a Git repository, are the primary reproducibility outputs of t

92 ite storage, interim storage, and a geologic repository, as well as how these alternatives are presen

93 of the BEETL library, available as a github repository at github.com/BEETL/BEETL.

94 sted at least once, and the median time from repository availability to first request was 235 days.

95 ational Blood and Marrow Transplant Research Repository between 2005 and 2014.

96 The Biological Reference Repository (BioR) is a toolkit for annotating variants.

97 derbilt electronic medical record-linked DNA repository, BioVU.

98 of multi-protein assemblies housed in public repositories, but the molecular characterization and sto

99 d would facilitate the effective use of data repositories by removing administrative and technical ba

100 opogenic sources and stored in environmental repositories can be a potential source for secondary pol

101 ural and non-structural, stored in different repositories can be semantically connected to form a hyb

102 These repositories can have an impact on future generations fo

103 broad appeal, the size and complexity of the repository can be intimidating to prospective users.

104 rom the United Kingdom: National Cancer Data Repository, Clinical Practice Research Datalink, Hospita

105 m 1998 to 2009 from the National Cancer Data Repository (comprising English cancer registry data).

106 With 21 participating algorithms and a data repository consisting of 13 data sets from various micro

107 he American Burn Association's National Burn Repository, containing outcomes and patient and injury c

108 ical conditions in the vicinity of a nuclear repository control the redox state of radionuclides, whi

109 cumulation of high-throughput data in public repositories creates a pressing need for integrative ana

110 However, these repositories currently do not provide simple interfaces

111 The Addgene Repository database is always evolving with new plasmid

112 A expression from BRCA data sets of the TCGA repository demonstrated that isomiRs can distinguish bet

113 and there is a need for a unified knowledge repository designed to track, analyze and visualize the

114 The NASR is a clinical and biospecimen repository established in 2011 to promote SUDEP research

115 nger sequencing and subsequently queried WES repositories for further case subjects carrying mutation

116 15 years; 71.4% male) who were selected from repositories for having varying degrees of BK viremia (r

117 been a key motivator for the development of repositories for mass spectrometry spectra and automated

118 hereas public databases have served as vital repositories for nucleotide sequences, they do not acces

119 UK Biobank is among the world's largest repositories for phenotypic and genotypic information in

120 of nuclear power is the long-term safety of repositories for radioactive waste.

121 ially habitable environments and as possible repositories for the preservation of organic matter.

122 SmartTables can also serve as repositories for user- or curator-generated lists.

123 ill increasingly serve as recipients of, and repositories for, AgNP.

124 Here, data from the AFLOW repository for ab initio calculations is combined with Q

125 st contaminant lists such as the Contaminant Repository for Affinity Purification (CRAPome) and norma

126 g Late-Onset Alzheimer Disease/National Cell Repository for Alzheimer Disease family study (hereinaft

127 However, there is no centralized repository for archiving and making these data and assoc

128 PubChem's BioAssay database is a public repository for archiving biological tests of small molec

129 operation for more than 5 years as a public repository for archiving circular dichroism spectroscopi

130 BDSS then queries a metadata repository for curated data transfer mechanisms and opti

131 experience using the Systematic Review Data Repository for data collection and management.

132 The Cellular Phenotype Database (CPD) is a repository for data derived from high-throughput systems

133 T biosynthesis and also establish a valuable repository for deciphering various structural, rate limi

134 The GDC is (i) a data repository for downloading data that have been submitted

135 istory dataset from this study is a valuable repository for future comparisons.

136 A and thus provides a larger and more secure repository for genetic information.

137 Observatories Metadatabase is an open access repository for geographic and ecological metadata associ

138 different databases, making an international repository for glycan structures, where unique accession

139 easyGWAS is also a public data repository for GWAS data and summary statistics and alre

140 e datasets reuse, we created the JingleBells repository for immune-related scRNA-seq datasets ready f

141 PubChem is a public repository for information on chemical substances and th

142 The Biological General Repository for Interaction Datasets is an open access da

143 Submission to the MetaboLights repository for metabolomics data currently places the bu

144 t www.metabolomicsworkbench.org, is a public repository for metabolomics metadata and experimental da

145 (TCGA) and the recently added datasets from REpository for Molecular BRAin Neoplasia DaTa (REMBRANDT

146 the endoplasmic reticulum and function as a repository for neutral lipids, as well as serving in lip

147 It is a repository for parameter sets that are part of published

148 uded queries of the electronic health record repository for patients with abnormal findings and lack

149 UK Biobank is the world's largest repository for phenotypic and genotypic information for

150 Thus, Sasquatch provides a powerful tool and repository for prioritizing likely regulatory SNPs in th

151 e proteomics community by providing a stable repository for PTM experiments.

152 The FAIRDOMHub is a repository for publishing FAIR (Findable, Accessible, In

153 WormBase (www.wormbase.org) is a central repository for research data on the biology, genetics an

154 uctures and their ligands; SASBDB, a primary repository for small-angle scattering data of various ma

155 m's BioAssay database has served as a public repository for small-molecule and RNAi screening data si

156 It is a web-accessible repository for storing and sharing systems biology resea

157 ivation of inflammatory signalling and are a repository for the pattern-recognition receptor cyclic G

158 ding the scientific community with an online repository for the storage of immune gene frequencies in

159 The European Nucleotide Archive is a repository for the submission, maintenance and presentat

160 e test the hypothesis that they may act as a repository for the synthesis of new peptides.

161 ied lymphatic endothelial cells (LEC) as the repository for this antigen archival, yet LECs are unabl

162 t serves the dual-purpose of being a content repository for tRFs and a tool for the interactive explo

163 and amorphous silica represents a long-term repository for U that may provide an alternative strateg

164 Center for Biotechnology Information (NCBI) repositories: Gene Expression Omnibus (GEO) and Sequence

165 cing data are available in the genomics data repository GEO under reference series GSE81578; RNA sequ

166 eded for knowledge extraction from the major repository GEO.

167 We used the extensive information repository Google Trends to examine the digital epidemio

168 e largely encompassed within two specialized repositories, HAEMCODE and ESCODE, which are focused on

169 The volume of RNA-Seq data sets in public repositories has been expanding exponentially, providing

170 A Git repository has been set up for sharing annotated materia

171 EHR-assigned disease labels to a biospecimen repository has demonstrated that genetic associations id

172 parison with data stored in an external data repository, has made feasible the automated development,

173 ic engineering technologies, and information repositories highlight the power of the mouse for geneti

174 ical mouse-human relationships and access to repositories holding mouse models.

175 argillaceous rock considered as a potential repository host.

176 ia that ought reasonably to be met by a data repository if it is to be seen as consistent with this i

177 ts housed in the National Archives and other repositories in addition to consulting published account

178 limitations and strengths of electronic data repositories in comparison with information collected by

179 genetics and analyses of the vast phenotypic repositories in electronic health record systems and pop

180 Therefore, the design of nuclear waste repositories in salt should guard against deformation-dr

181 formation will host geological nuclear waste repositories in Switzerland.

182 nder conditions relevant for a nuclear waste repository in crystalline rock.

183 ibed here, is available in the AnalysisTools repository in the Reactome GitHub.

184 have not previously encountered the term: a repository in which useful but potentially sensitive dat

185 Big data repositories, including those for molecular, clinical, a

186 documentation and quality assessment of Data Repository information.

187 The amount of sequence information in public repositories is growing at a rapid rate.

188 vered, our ability to effectively mine these repositories is limited.

189 tient data repository and included in a data repository maintained prospectively starting June 1, 201

190 n example, we discuss how publicly available repositories may benefit data producers and end-users al

191 We call this concept the Universal Control Repository Network (UNICORN), a means to perform associa

192 The popularity of the public repository NeuroMorpho.Org demonstrates that data sharin

193 at is currently eroding the planet's richest repositories of biodiversity.

194 Here, we use repositories of cell type-specific transcriptomes to qua

195 g scientific endeavors are creating big data repositories of data from millions of individuals.

196 esis is that postreproductive females act as repositories of ecological knowledge and thereby buffer

197 Public and private repositories of experimental data are growing to sizes t

198 These studies have produced extensive repositories of genetic variation and trait measurements

199 imize the value of these models, centralized repositories of high-quality models must be established,

200 e not currently well represented in existing repositories of immune alleles.

201 tabolic network reconstructions (GENREs) are repositories of knowledge about the metabolic processes

202 E) database is one of the world-leading data repositories of mass spectrometry (MS)-based proteomics

203 database is one of the world-leading public repositories of mass spectrometry (MS)-based proteomics

204 ins indicate that they contain metal and are repositories of noble gases.

205 e availability of accurate and comprehensive repositories of TCR and Ig alleles.

206 , to April 30, 2016, in addition to the data repositories of the Centers for Disease Control and Prev

207 The immense and growing repositories of transcriptional data may contain critica

208 noblot assays, we have developed a validated repository of 438 commercially available antibodies that

209 ere, we present an update on the Genome-Wide Repository of Associations between SNPs and Phenotypes (

210 stinal Bacterial Collection (miBC), a public repository of bacterial strains and associated genomes f

211 gral link between CALADIS and the BioNumbers repository of biological quantities further facilitates

212 etwork of Cancer Genes is a manually curated repository of cancer genes derived from the scientific l

213 ienophiles and eventually generating a small repository of complex molecules, thus exemplifying how s

214 A repository of curated HTS training materials would suppo

215 ntext by reciprocal linking with dictyBase-a repository of Dictyostelium genomic data.

216 e majority of Antarctica and is an important repository of dissolved organic matter (DOM).

217 he Gene Expression Omnibus (GEO) is a public repository of gene expression data.

218 A complete repository of gene-gene interactions is key for understa

219 he DECIPHER database is an accessible online repository of genetic variation with associated phenotyp

220 l many participants to create an open-access repository of genome, health and trait data for research

221 Glycogen, the repository of glucose in many cell types, contains small

222 sicians' knowledge and skill, being a public repository of health-related information, and advocating

223 mpeting hypotheses, we constructed a massive repository of historical and archaeological information

224 on under the Bayesian framework in which the repository of historical data can be exploited to build

225 We then generated a large in silico repository of in silico granulomas coupled to lymph node

226 The fossil record is a unique repository of information on major morphological transit

227 se (COMBREX-DB; combrex.bu.edu) is an online repository of information related to (i) experimentally

228 ritical for encoding declarative memory, our repository of knowledge of who, what, where and when.

229 f sequences were generated from a historical repository of longitudinal specimens from 19 vertically

230 BioModels is a repository of mathematical models of biological processe

231 his study, hair was evaluated as a long-term repository of nerve agent hydrolysis products.

232 netic Resonance Data Bank (BMRB) is a public repository of Nuclear Magnetic Resonance (NMR) spectrosc

233 EchinoDB is a repository of orthologous transcripts from echinoderms t

234 25 training chapter-based) developed from a repository of over 2500 unique image sets of ROP.

235 GRASP is a centralized repository of publically available genome-wide associati

236 In this article, a model and a repository of radiologic CDEs is described, and three im

237 se lakes were selected for study as a likely repository of recent atmospheric perchlorate deposition.

238 asispecies in cellular reservoirs, the major repository of replication-competent HIV-1 in infected in

239 language processing system, which creates a repository of rich phenotype data linked to clinical bio

240 he RNA Structurome Database, a comprehensive repository of RNA secondary structural information that

241 We also created a public repository of sepsis gene expression data to encourage t

242 Together, we have built the TB Portals, a repository of socioeconomic/geographic, clinical, labora

243 , we established a large, publicly available repository of well-characterized leukemia and lymphoma P

244 go orthotopic engraftment, called the Public Repository of Xenografts (PRoXe).

245 lely on alloy properties available in online repositories, offer the sought-after key for accelerated

246 lack of control over the analysis tools and repositories often results in undesirable situations dur

247 on the perovskite-oriented quantum materials repository, opens new avenues for the discovery of perov

248 occur in the vicinity of a radioactive waste repository or a reprocessing plant.

249 e of this kind of data can be found in a new repository (PlanformDB) that encodes descriptions of pla

250 es and the role in this process that plasmid repositories play.

251 These protein interaction repositories provide meaningful structural information o

252 Public data repositories provide the opportunity to leverage large m

253 Furthermore, public sequencing repositories provide unique opportunities for laboratori

254 nstitute on Aging (NIA)-funded national data repository (reflecting samples collected between 1984-20

255 alized across thousands of online databases (repositories, registries, and knowledgebases).

256 The reducing conditions in a nuclear waste repository render neptunium tetravalent.

257 ong-term safety assessment for nuclear waste repositories requires a detailed understanding of actini

258 Finally, using a repository resting-state fMRI dataset, we demonstrate th

259 ext of biomedical articles in PubMed Central repository (rho = 0.62 for similarity and 0.58 for relat

260 electrons above the TC, playing an 'electron repository' role in maintaining high figure of merit ZT.

261 upport the scientists that are accessing the repository's materials and data.

262 sity of California, Irvine) Machine Learning Repository shows that RBF outperforms other popular meth

263 Such data is deposited into data repositories such as the Gene Expression Omnibus (GEO) f

264 We use large RNAi and CRISPR repositories that are publicly available to evaluate a n

265 undamental challenge is to site such data in repositories that can easily be accessed under appropria

266 a standard format upon which to base central repositories that will soon arise following the expandin

267 s a U.S. Department of Energy mined geologic repository that has been in operation since March, 1999.

268 tafluidics, an open-source, community-driven repository that hosts digital design files, assembly spe

269 FINDbase is a comprehensive data repository that records the prevalence of clinically rel

270 builds the core reference for a growing data repository that will allow inferring deviations from nor

271 s only operating deep geologic nuclear waste repository, the Waste Isolation Pilot Plant (WIPP), resu

272 gene expression samples available in public repositories, there is greater potential for discovery o

273 lished articles and parse query results from repositories to determine if the datasets remain private

274 an be integrated in the design of geological repositories to reduce pressure build-up.

275 ting models and constructed an updated model repository to document the resolution of these inconsist

276 The lack of a centralized repository to enable the efficient mining of this huge d

277 setts General Hospital Research Patient Data Repository to identify patients for the period January 1

278 ness the potential of public gene expression repositories, to develop gene expression profiles that c

279 patients from Vanderbilt University's BioVU repository treated with glucocorticoids (odds ratio [OR]

280 multi-platform R package, available on CRAN repositories under GPL-3 license.

281 tial host rocks for high-level nuclear waste repositories, under anaerobic conditions.

282 The AASK-N repository urine samples have been compromised by the ac

283 This repository uses Git; hence, it is decentralized and self

284 The Document Repository was implemented as searchable bibliographic r

285 tment of Defense Military Health System Data Repository was queried for individuals diagnosed with ca

286 m the NIH Molecular Libraries Small Molecule Repository was screened.

287 e near-field of high-level radioactive waste repositories, was investigated under anoxic conditions.

288 ry Materials (available at the CLAMMS Github repository), we present our methods and validation resul

289 extend the data types supported by community repositories, we built a prototype Image Data Resource (

290 Using this repository, we demonstrate that large studies of acute l

291 We used the Stanford Military Data Repository, which contains comprehensive medical and adm

292 Animal Matrix Database, an open-data online repository, which in its version 1.0.0 contains data on

293 Of 5704 men in the clinical data repository who were treated for AGA with finasteride, 1.

294 These Repositories will contain source information available t

295 cument access and data preparation using the Repositories will provide information resources for comp

296 The Data Repository will contain original data from source docume

297 ovations, such as the Systematic Review Data Repository, will contribute to finding trustworthy answe

298 will serve to compile a comprehensive image repository, will provide insight into physiologic varian

299 erstone of a regularly updated, high quality repository with data sharing, reproducibility, and reusa

300 one of the largest MS proteomics public data repositories worldwide.