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1 the nonspecific cleavage domain of the FokI restriction enzyme.
2 is gap are substrates for Alu I, a blunt end restriction enzyme.
3 igestion with DpnII but not against the DpnI restriction enzyme.
4 tracycline-controlled expression of the SacI restriction enzyme.
5 uced either by HO endonuclease or the I-SceI restriction enzyme.
6 d with methylation-sensitive and insensitive restriction enzymes.
7 still no structural information on Type III restriction enzymes.
8 complexes and also with discussion of type I restriction enzymes.
9 endonucleases to function analogously to DNA restriction enzymes.
10 uperior accuracy and without the need to use restriction enzymes.
11 re of DNA sequences within the nucleosome to restriction enzymes.
12 kb DNA ladders when digested with two common restriction enzymes.
13 single combined cluster analysis of multiple restriction enzymes.
14 not require any restriction sites or use of restriction enzymes.
15 sk that rarely can be achieved using type-II restriction enzymes.
16 milarities between this and other classes of restriction enzymes.
17 e breakage of the P-O3' bond, in common with restriction enzymes.
18 r conditions compare favourably with type II restriction enzymes.
19 ragments are generated using frequent cutter restriction enzymes.
20 e limited in resolution by their reliance on restriction enzymes.
21 repeat as demonstrated by an increase in the restriction enzyme accessibility and in the size of DNA
22 e further substantiated by the findings of a restriction enzyme accessibility assay and TSA-stimulate
25 apping dynamics is associated with increased restriction enzyme accessibility of histone-bound DNA af
29 tiplex assay was applied to the detection of restriction enzymes activities as well as base excision
30 Therefore, PstII has characteristic Type III restriction enzyme activity as exemplified by EcoPI or E
31 -molecule amplification; introduction of the restriction enzymes affected both the rate and the "fate
36 he isolated DNA is suitable for digestion by restriction enzymes, amplification by PCR and Southern b
40 , which interrogates DNA methylation via the restriction enzyme analysis of PCR-amplified bisulfite t
41 nd circulation periods were characterized by restriction enzyme analysis of viral DNA and select gene
42 n of methylation using methylation-sensitive restriction enzyme analysis or focused on single-copy ge
47 ique that involves cutting the genome with a restriction enzyme and isolating the targeted sequences.
48 representations from a methylation-sensitive restriction enzyme and its methylation-insensitive isosc
49 he chromatin is solubilized, digested with a restriction enzyme and ligated at low DNA concentration
50 y was used to test this model for the EcoRII restriction enzyme and provide direct visualization and
51 The HMW DNA is digested using an appropriate restriction enzyme and size-fractionated using pulsed-fi
53 which is greatly influenced by the choice of restriction enzyme and the frequency at which it can cut
54 n is structurally similar to classic Type II restriction enzymes and contains the endonuclease cataly
55 ecific factors, including selectivity of DNA restriction enzymes and fragmentation method, as well as
56 present a model for restriction by type III restriction enzymes and highlight the similarities betwe
57 going molecular cloning steps and the use of restriction enzymes and ligases necessary in other avail
58 bout recognition and cleavage sites for both restriction enzymes and methyltransferases as well as co
59 samples digested with methylation sensitive restriction enzymes and mock digested are then transform
64 among the most important characteristics of restriction enzymes and their corresponding methylases,
66 was first digested by methylation-sensitive restriction enzymes and then precipitated by methyl-bind
67 ins how ArdA can bind and inhibit the Type I restriction enzymes and we demonstrate that 6 different
68 r enzymes that change DNA supercoiling (e.g. restriction enzymes) and are suitable for use in a high-
69 and at high resolution the DSBs induced by a restriction enzyme, and we characterize their impact on
70 some structural insights into the working of restriction enzymes, and offers some preliminary data ne
71 tors of terminases, helicases, translocating restriction enzymes, and protein translocases possess a
72 se superfamily of proteins that include many restriction enzymes, and the structure of the active sit
73 plied to study both protein and nucleic acid restriction enzymes, and was demonstrated to accurately
74 s when we use data generated using different restriction enzymes, and when we reconstruct structures
76 the reduction in genomic complexity with the restriction enzymes approach, genotyping-by-sequencing.
79 nded an observed association, using a custom restriction-enzyme assay to analyze the DNA in 158 sampl
80 y, using a combination of Sanger sequencing, restriction enzyme assays and targeted deep sequencing.
82 prototypical DNA-binding protein, the PvuII restriction enzyme, at microfluidic-encapsulated, DNA-mo
83 uplex is substituted by RNA we find that six restriction enzymes (AvaII, AvrII, BanI, HaeIII, HinfI a
84 ng prevents endonuclease activity by type II restriction enzymes BamHI, EcoRI and SalI, and inhibitio
87 The slow evolution and engineering of new restriction enzymes calls for alternative strategies to
89 native strategies to design novel and unique restriction enzymes capable of binding and digesting spe
90 e-wide analyses of DNA modifications rely on restriction enzymes capable of digesting genomic DNA at
91 ses are consistent with the observation that restriction enzymes caused extensive DNA cleavage in the
93 ble-strand breaks (DSBs) created in vitro by restriction enzyme cleavage in or near CGG*CCG or CTG*CA
94 ion sites can be highly biased by the use of restriction enzyme cleavage of genomic DNA, which is a l
95 hod, differences due to polymorphisms at the restriction enzyme cleavage sites are also observed betw
97 s available for the systematic evaluation of restriction enzyme combinations that can enrich for cert
99 eover, we show in silico that cuRRBS-defined restriction enzymes consistently out-perform MspI digest
100 or exposure of chromatin-sensitive sites to restriction enzymes could be used to detect this reorgan
101 Thus, germline expression of mitochondrial restriction enzymes creates a powerful selection and has
103 sing confocal Raman spectra, S1 nuclease and restriction enzymes demonstrated that the structural dif
104 Zinc finger nucleases (ZFNs) are engineered restriction enzymes designed to target specific DNA sequ
105 ysis with hemoglobin is demonstrated through restriction enzyme detection, and an enhancement in sens
106 were screened for the c.828+3A>T mutation by restriction-enzyme digest, single-strand conformational
107 ntional cloning requires the purification of restriction-enzyme-digested vectors prior to the ligatio
109 h no physical ends detected by sequencing or restriction enzyme digestion analysis, and lacked a cos
110 bisulfite sequencing, methylation sensitive restriction enzyme digestion and array-based detection t
111 Standard BioBrick assembly normally involves restriction enzyme digestion and ligation of two BioBric
112 (scCGI-seq), combining methylation-sensitive restriction enzyme digestion and multiple displacement a
113 on and adduct bypass and a slightly modified restriction enzyme digestion and post-labeling assays re
114 ntrol modules capable of mutation sensing by restriction enzyme digestion and real-time on-chip micro
115 d from an avian erythroleukemia cell line by restriction enzyme digestion and released from the nucle
116 A real-time RT-PCR pyrosequencing assay, a restriction enzyme digestion assay, and direct sequencin
117 using polymerase chain reaction followed by restriction enzyme digestion by investigators blinded to
118 for this hypothesis, we assessed, by using a restriction enzyme digestion coupled with LC-MS/MS metho
119 to pro-B cell lines and HS1 is accessible to restriction enzyme digestion exclusively in normal pro-B
121 de polymorphism (SNP) assay based on PCR and restriction enzyme digestion or sequencing of the amplif
123 onverted to an expression vector by a simple restriction enzyme digestion with MfeI (to "drop-out" th
124 ucts can be used directly for sequencing and restriction enzyme digestion without further purificatio
125 f the region encompassing the polymorphisms, restriction enzyme digestion, and detection of fragments
128 enic epitope, as reported by diagnostic NciI restriction enzyme digestion, DNA sequencing, and wester
129 formation of the tetrahedron was verified by restriction enzyme digestion, Ferguson analysis, and ato
130 renal carcinoma cell lines was assessed with restriction enzyme digestion-coupled PCR and bisulfite g
137 oint mutations uses nested PCR combined with restriction enzyme digestions, which is laborious and ti
138 comprehensive database of information about restriction enzymes, DNA methyltransferases and related
139 comprehensive database of information about restriction enzymes, DNA methyltransferases and related
148 EcoP15I is the prototype of the Type III restriction enzyme family, composed of two modification
150 ific DNA nucleases produced by fusion of the restriction enzyme FokI endonuclease domain (FN) with th
151 TS-4 was analyzed with methylation-sensitive restriction enzymes, followed by polymerase chain reacti
152 Lastly, we show that a proper choice of restriction enzyme for the optical map may substantially
155 ots can be released by simple digestion with restriction enzymes for subsequent characterization by s
156 target, queries over 1.3 M independent NspI restriction enzyme fragments in the 200 bp to 1100 bp si
158 this approach include facile amplification, restriction enzyme-free library generation, and a signif
159 d-type levels of homologous recombination at restriction enzyme-generated breaks but is deficient in
161 t this is a reliable method to detect active restriction enzyme genes in newly sequenced genomes, the
163 ngle-insert cloning of DNA fragments without restriction enzymes has traditionally been achieved usin
167 e developed HiCap, which combines a 4-cutter restriction enzyme Hi-C with sequence capture of promote
169 e performed a previously reported assay, the restriction enzyme hotspot mutation assay (IgkappaREHMA)
171 in structure of the MHRE exhibited increased restriction enzyme hypersensitivity and enhanced histone
173 and breaks (DSBs) induced by a site-specific restriction enzyme, I-SceI or by ionizing radiation (IR)
176 he expression of > 600 genes was affected by restriction enzymes in cells lacking PT, including induc
177 al mechanism of PT-dependent DNA cleavage by restriction enzymes in the face of partial PT modificati
178 , we report that both ionizing radiation and restriction enzymes increase the frequency of microhomol
180 Efficient cleavage of these 100-mers by a restriction enzyme indicates that the DNA adopts a nativ
181 A and render nucleosomal DNA accessible to a restriction enzyme, indicative of a chromatin-remodeling
182 y promote large-scale genomic deletions from restriction enzyme-induced DSBs; third, they are require
185 (MSCC) with the HpaII methylation-sensitive restriction enzyme is a cost-effective method to pinpoin
189 several algorithms and modules, updated the restriction enzyme library, added batch processing capab
191 ed an artificial population consisting of 12 restriction enzyme marker mutants of Cucumber mosaic vir
195 The procedure consists of three steps: a restriction enzyme-mediated ligation of an adapter to th
196 bisulfite conversion, methylation-sensitive restriction enzymes, methyl-binding proteins and anti-me
198 tation (MeDIP-seq) and methylation-sensitive restriction enzyme (MRE-seq) sequencing data to predict
199 ombined MeDIP-seq with methylation-sensitive restriction enzyme (MRE-seq) sequencing for comprehensiv
200 A is digested by the methylation-insensitive restriction enzyme MspI to generate short fragments that
202 ning the use of designed ZFNs and commercial restriction enzymes, multiple plant expression cassettes
207 ted bacterial DNA, samples are fragmented by restriction enzymes or sonication, then thermocycled in
210 he use of methylation-sensitive isoschizomer restriction enzyme pairs and/or sodium bisulfite treatme
214 use a genetic reversion assay to show that a restriction enzyme, PspGI, protects cytosines within its
215 use model expressing a mitochondria-targeted restriction enzyme, PstI or mito-PstI, to damage mitocho
217 t mapping method that combines 5hmC-specific restriction enzyme PvuRts1I with a 5hmC chemical labelin
218 ifies the ATP hydrolysis scheme for Type III restriction enzymes, questions remain as to why multiple
219 modification genes and an adjacent putative restriction enzyme (RE) operon likely form a restriction
220 lecular manipulation methods, we investigate restriction enzyme reactions with double-stranded (ds)DN
222 e allele read frequency, strain specificity, restriction enzyme recognition site changes and flanking
225 on a user-defined template, (3) selection of restriction-enzyme recognition sites in the spacer betwe
227 erases generating 3-OH and 5-P ends, but one restriction enzyme (restriction glycosylase) excises unm
231 ation of chromosomal DNA with McrBC and DpnI restriction enzymes, single-stranded cDNA (ss-cDNA) liga
232 ed representation sequencing approach called Restriction Enzyme Site Comparative Analysis (RESCAN) to
235 The ELAN method uses judicious choice of restriction enzyme sites coupled with simultaneous diges
236 plified by flanking primers that can include restriction enzyme sites for inserting the product into
237 rimarily occurs within two consecutive HpaII restriction enzyme sites in a tissue-specific manner, mo
238 ever, Clustal DNA alignments identified AFLP restriction enzyme sites that were undigested in the tis
240 with single UV lesion surrounded by multiple restriction enzyme sites, we demonstrate in vitro that D
241 230 bp DNA segment containing five pairs of restriction enzyme sites, which can be used to produce a
242 f the cloned gmr genes in vivo and suggest a restriction enzyme specific for sugar modified HMC DNAs.
243 ification (RT-LAMP), and linear degradation (restriction enzymes) starting with hepatitis C viral RNA
244 0's DNA is resistant to cutting with several restriction enzymes, suggesting DNA modification, but de
245 sites including options for the selection of restriction enzyme suppliers, and (4) output files desig
246 ral and regulatory chromatin interactions by restriction enzyme targeting and two-step proximity liga
251 inc finger nucleases (ZFNs)-hybrid synthetic restriction enzymes that can be specifically designed to
252 SfiI is a member of a growing family of restriction enzymes that can bind and cleave two DNA sit
254 ctivity following BAC digestion with several restriction enzymes that cleaved different sets of genes
259 al that BsrDI and BtsI belong to a family of restriction enzymes that possess two catalytic sites: a
260 The structure of AgeI is similar to the restriction enzymes that share in their target sites a c
261 loci encoding type IV methylation-dependent restriction enzymes that target DNA containing C5-methyl
262 ures offer a rare opportunity to compare two restriction enzymes that work on exactly the same DNA su
264 many recombinases, transcription factors and restriction enzymes, the importance of non-specific DNA
265 he BcgI endonuclease exemplifies a subset of restriction enzymes, the Type IIB class, which make two
266 age threshold for permeation of DNA bound to restriction enzymes through a nanopore that is associate
268 ation of random fragmentation and a type III restriction enzyme to derive a densely covering sgRNA li
269 situ DNase Hi-C obviates the dependence on a restriction enzyme to digest chromatin, instead relying
272 me that expresses a mitochondrially targeted restriction enzyme to induce tissue-specific homoplasmy
274 be combined with the nuclease domain of FokI restriction enzyme to produce TAL effector nucleases (TA
275 ave developed modification-dependent type IV restriction enzymes to defend the cell from T4-like infe
276 samples, reduces genome complexity by using restriction enzymes to divide the genome into fragments
277 ures of DGS include (1) use of high-frequent restriction enzymes to fractionate the genome into small
278 hich micrococcal nuclease is used instead of restriction enzymes to fragment chromatin, enabling nucl
279 We leverage codon degeneracy and type IIs restriction enzymes to generate orthogonal ligation link
280 method of genome reduction that employs two restriction enzymes to generate overhangs in opposite or
282 tion analysis, in which OTU DUBs are used as restriction enzymes to reveal linkage type and the relat
283 ubsequent restriction analysis with a single restriction enzyme, Tsp5091, yielded distinct RFLP patte
284 protein can be purified and forms an active restriction enzyme upon addition of restriction subunits
285 genomic DNAs treated with four endonuclease restriction enzymes using both chamber and droplet dPCR
288 G2-C-G3-C-C recognition sequence of the NarI restriction enzyme were compared, using the oligodeoxynu
289 ease C gene of H. pylori and Sau-3 and Hha I restriction enzymes were used for polymerase chain react
292 esearch on zinc finger proteins and the FokI restriction enzyme (which revealed a bipartite structure
294 ining numerous pores, allowing the access of restriction enzymes while preventing the DNA from physic
297 analysis by analyzing the cleavage sites of restriction enzymes within exon 1 of the AR gene and fou
298 PFGE profiles were generated by use of six restriction enzymes (XbaI, BlnI, SpeI, SfiI, PacI, and N
299 roved T-vector system takes advantage of the restriction enzyme XcmI to generate a T-overhang after d
300 q to determine the frequency and spectrum of restriction-enzyme-, zinc-finger-nuclease-, and RAG-indu
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