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1 families, except for the highly-abundant roo retrotransposon.
2 ells but affecting a different repertoire of retrotransposons.
3 esis of MIWI2 piRNAs, and de-represses LINE1 retrotransposons.
4 hich is conserved among retroviruses and LTR-retrotransposons.
5 mposition that can lead to the activation of retrotransposons.
6 d harbors features characteristic of non-LTR retrotransposons.
7 iately cotranscribed with their flanking LTR retrotransposons.
8 rate through conserved mechanisms to contain retrotransposons.
9 nal retrocopies flanked by discontinuous LTR retrotransposons.
10 rnal deletions of large long terminal repeat retrotransposons.
11 ag protein of all orthoretroviruses and some retrotransposons.
12 lasticity, was "domesticated" from Ty3/Gypsy retrotransposons.
13 NA, three-quarters of which are derived from retrotransposons.
14 er-reporter gene constructs with and without retrotransposons.
15 es, papillomaviruses, hepatitis B virus, and retrotransposons.
16 n, and may silence abundant A-genome-derived retrotransposons.
17 the OAS-RNase L system in the restriction of retrotransposons.
18 ate immune response against retroviruses and retrotransposons.
19 ion as a suppressor of structurally distinct retrotransposons.
20 enable primates to respond to newly emerged retrotransposons.
21 tion strategies used by long terminal repeat retrotransposons.
22 ilencing, imprinting, and the suppression of retrotransposons.
23 ed high rates of sequence diversification in retrotransposons.
24 ots") on foreign genomes such as viruses and retrotransposons.
25 stage embryos, including MERVL and ERVL-MaLR retrotransposons.
26 pe 1 (HIV-1) and the mobility of LTR/non-LTR retrotransposons.
27 rotransposons with three out of ten examined retrotransposons (1a11, lambda-olt 2-1 and xretpos(L)) b
28 ed from many of the 4000 copies of ERV-9 LTR retrotransposons acted by a similar cis mechanism to mod
29 es (Piwi) proteins are known for suppressing retrotransposon activation in the mammalian germline.
31 e beginning of development and indicate that retrotransposon activation is integral to the developmen
34 zebrafish models, we show that p53 restricts retrotransposon activity and genetically interacts with
35 d among all retroviruses and even some yeast retrotransposons, although the reason for this conservat
36 ribution of long interspersed element (LINE) retrotransposon and their potential to mediate NAHR.
37 nts revealed widespread induction of Class I retrotransposons and activation of cytoplasmic DNA viral
38 as well as epigenetic changes, especially in retrotransposons and heterochromatin, although the mecha
40 y which DNA methylation is maintained at LTR retrotransposons and imprinted genes during developmenta
42 AID / APOBEC hotspots have a large impact on retrotransposons and non-mammalian viruses while having
43 ecific classes of long terminal repeat (LTR) retrotransposons and organize into large loci (>50 kbp)
45 A regulatory network mediated by piRNAs with retrotransposons and pseudogenes as regulatory sequences
47 Dbr1 is also involved in the propagation of retrotransposons and retroviruses, although the precise
48 is composed of highly repetitive centromeric retrotransposons and satellite repeats that are highly v
50 se of other researchers have made clear that retrotransposons and the genomic plasticity they permit
51 tantly, we also identify putative autonomous retrotransposons and very recent transpositions of a TRI
52 eteriously mutating invading retroviruses or retrotransposons and, in the case of AID, changing antib
53 et1 was strongly bound to the SET1 mRNA, Ty1 retrotransposons, and noncoding RNAs from the ribosomal
54 a unique target to specifically inhibit LTR-retrotransposons, and tRF-targeting is a potentially hig
55 posons transfer horizontally more often than retrotransposons, and unveil phylogenetic relatedness an
56 the human-specific subfamily of LINE-1 (L1) retrotransposon are highly polymorphic across individual
68 Long interspersed nuclear element-1 (L1) retrotransposons are mobile repetitive elements that are
76 ical bird lineages exclusively share a novel retrotransposon, AviRTE, resulting from horizontal trans
77 RVs), also called long terminal repeat (LTR) retrotransposons, begins with transcription by RNA polym
79 ied Copia25 in Coffea canephora, a new plant retrotransposon belonging to the Ty1-Copia superfamily.
82 members of the L1 (LINE-1) clade of non-LTR retrotransposons can be deleterious, the L1 clade has re
85 mammalian endogenous retrovirus-related ERVL retrotransposon class on gene expression in the germline
86 pansion limits the activity of newly emerged retrotransposon classes, and this is followed by mutatio
87 Long interspersed element-1s (L1) are mobile retrotransposons comprising 17% of the human genome.
88 y population of chromosomally integrated LTR retrotransposons consisting of pairwise recombination pr
91 region of Arabidopsis thaliana COPIA78/ONSEN retrotransposons contains heat-responsive elements (HREs
92 RNA molecules into the human genome by LINE retrotransposons, contributing to the approximately 50%
93 ycomb protein EZH2 and RNA made from B2 SINE retrotransposons controls stress-responsive genes in mou
96 retrotransposons than DNA transposons and as retrotransposon copy number in both rice and maize genom
97 nH3 are colonized by the centromere-specific retrotransposon CR2 at a rate that would result in centr
98 However, the identity of KZNF genes battling retrotransposons currently active in the human genome, s
100 imprinted retrotransposon-like 1 (Rtl1) is a retrotransposon-derived gene that has evolved a function
108 other apicomplexan has been found to possess retrotransposons, Eimeria is home to a family of chromov
109 NA methylation with particular enrichment at retrotransposon elements associated with their transcrip
112 illion years ago when the L1PA3-subfamily of retrotransposons escaped ZNF93's restriction through the
114 rt interspersed nuclear elements (SINEs) are retrotransposons evolutionarily derived from endogenous
116 n has been shown, the mechanisms controlling retrotransposon expression in early embryos are still no
117 n early embryos and the proper regulation of retrotransposon expression is essential for normal devel
118 genomic approach to address whether specific retrotransposon families play a direct role in chromatin
119 apidly evolved to repress these two distinct retrotransposon families shortly after they began to spr
122 indicates Arc originated from the Ty3/Gypsy retrotransposon family and was "domesticated" in higher
123 ied transposition bursts of a heat-activated retrotransposon family in Arabidopsis We recorded a high
124 rized an antisense (AS) promoter in mouse L1 retrotransposons for the first time, oriented antiparall
125 tly transposes in P. patens, being the first retrotransposon from a vascular plant reported to transp
127 has been used to mine potentially active L1 retrotransposons from the reference genome sequences of
128 nding may represent the birth of an emerging retrotransposon gene that can adopt various fates, as it
129 mbination of gene-disruption platforms (Tnt1 retrotransposons, hairpin RNA-interference constructs, a
131 Long interspersed element 1 (LINE-1 or L1) retrotransposons have generated one-third of the human g
132 family designated "Tyba" and by centromeric retrotransposons (i.e., CRRh) occurring as genome-wide i
133 al, we identify that the insertion of an LTR-retrotransposon in its 11(th) intron results in a consid
134 he ms2 mutant has acquired a terminal-repeat retrotransposon in miniature (TRIM) element in its promo
135 reas the presence of LINE in P2 or gypsy LTR retrotransposon in P3 reduced expression of the reporter
138 resent the only currently active, autonomous retrotransposon in the human genome, and they make major
139 LINE-1 (or L1) is an autonomous non-LTR retrotransposon in the human genome, comprising 17% of i
141 HT-TREBS to study DNA methylation changes at retrotransposons in a locus-specific manner in multiple
143 the DNA methylation pattern of 4799 IAP LTR retrotransposons in embryonic stem, somatic and Neuro2A
145 aintaining the genome stability by silencing retrotransposons in germline tissues- where piRNAs were
146 refully annotated, full-length Sirevirus LTR retrotransposons in maize, we show that their silencing
150 ions, we also found patterns of unrestrained retrotransposons in p53-driven mouse and human cancers.
152 were primarily associated with the LTR/Gypsy retrotransposons in the heterochromatin flanking the cen
153 acute stress can regulate the expression of retrotransposons in the rat hippocampus via an epigeneti
157 ys a key role in limiting the propagation of retrotransposons including Long Interspersed Element-1 (
158 periments revealed that activation of LINE-1 retrotransposons increases the expression of IFNbeta and
161 we identify the mutation in this strain as a retrotransposon insertion in the Clcc1 gene, which encod
162 Using a positional cloning strategy and a retrotransposon insertion line, we identify two novel al
163 lop legume genetics resources, > 21 700 Tnt1 retrotransposon insertion lines have been generated.
165 nd HONE1 do not have a HeLa cell-specific L1 retrotransposon insertion, suggesting that these three H
166 s, L1s) are responsible for over one million retrotransposon insertions and 8000 processed pseudogene
168 q, a computational framework that identifies retrotransposon insertions from sequencing data, to whol
169 jor source of genetic variation, and somatic retrotransposon insertions have been reported in cancer.
171 ation of conservation patterns of these four retrotransposon insertions in several rice accessions im
172 e exome data and discovered 35 novel somatic retrotransposon insertions into exonic regions, includin
173 e screenings for phylogenetically diagnostic retrotransposon insertions involving the representatives
174 ment across tumor types suggest that somatic retrotransposon insertions may represent an important cl
176 germline polymorphisms, we find 810 somatic retrotransposon insertions primarily in lung squamous, h
177 nce long interspersed element-1 (LINE-1, L1) retrotransposon insertions selectively in the human geno
178 s of 250 families, including complex indels, retrotransposon insertions, and interchromosomal events.
183 he disease is the spontaneous insertion of a retrotransposon into the 3' untranslated region (3'UTR)
184 entas and that protein encoded by the LINE-1 retrotransposon is upregulated in hypomethylated trophec
188 escribe the propensity for a gibbon-specific retrotransposon (LAVA) to insert into chromosome segrega
190 ing overexpression of proximal microRNAs and retrotransposon-like 1 (Rtl1) were associated with HCC.
194 zation (e.g. the clustering of telomeres and retrotransposon long terminal repeats (LTRs)) were obser
195 r between DNMT1 and DNMT3a/3b in suppressing retrotransposon long terminal repeats and long intersper
198 e duplication and dispersed duplications via retrotransposons may have played pivotal roles in the ex
199 methylation reprogramming genes and in LINE1 retrotransposons may play important roles in downstream
206 ish models, we found that diverse classes of retrotransposons migrate to the germ plasm, a specialize
210 this large-scale, comprehensive analysis of retrotransposon movement across tumor types suggest that
213 ssion of the transcriptome that includes Tf2 retrotransposons, noncoding RNAs, and regulators of deve
216 throblasts, lncRNAs transcribed from the LTR retrotransposons of ERV-9 human endogenous retrovirus ac
220 In the mouse, long terminal repeat (LTR)-retrotransposons, or endogenous retroviruses (ERV), acco
221 how that post-translational regulation of L1 retrotransposons plays a key role in maintaining trans-g
224 e transcriptional program with innovation at retrotransposon promoters, and establish a basis for ani
225 sites demonstrated significant overlap with retrotransposons, providing evidence for the long-standi
226 repressive histone modifications to silence retrotransposons, rather than DNA methylation as in diff
227 A new study provides evidence that LINE-1 retrotransposons regulate chromatin dynamics and are ess
231 satellite repeat (Ss1) and several Ty3/gypsy retrotransposon-related repeats (Ss166, Ss51, and Ss68).
235 PP2A complex, demonstrating a role of URI in retrotransposon repression, a key function previously de
236 nic stem cells, transcriptional silencing of retrotransposons requires KAP1 (also known as TRIM28) an
237 To our knowledge, this is the first Gag-like retrotransposon restriction factor described in the lite
238 long interspersed nuclear elements (LINE-1) retrotransposons, resulting in increased LINE-1 mRNA.
240 tive chromatin states separated by extensive retrotransposon-rich regions that are associated with ab
243 and in vivo functional analyses reveal that retrotransposon sequences in the 3' UTR of mRNAs are tar
245 Pnldc1 mutant mice exhibit disrupted LINE1 retrotransposon silencing and defect in spermiogenesis.
246 is reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-oc
247 Thus, RNA interference through gene and retrotransposon silencing previously encountered in Aply
248 ing RNA) ribonucleoproteins (piRNPs) enforce retrotransposon silencing, a function critical for prese
249 l regulatory roles in mammalian development, retrotransposon silencing, genomic imprinting, and X-chr
253 e consists of repetitive elements, including retrotransposons, some of which are transcribed after fe
256 evolutionary scenarios received considerable retrotransposon support, leaving us with a network of af
257 to limit this risk by expressing a cohort of retrotransposon-suppressing genome-defence genes whose s
258 ndem repeat-Alu (SINE-VNTR-Alu), subfamily-E retrotransposon (SVA-E) inserted into CASP8 intron 8.
259 the widespread occurrence and importance of retrotransposons, systematic studies to reveal the exten
260 plicing and are evolutionary predecessors of retrotransposon, telomerase, and retroviral RTs as well
262 show that insertion of the fission yeast LTR retrotransposon Tf1 is guided by the DNA binding protein
263 TE-lincRNAs were more often derived from retrotransposons than DNA transposons and as retrotransp
266 elements, or SINEs, are an abundant class of retrotransposons that are transcribed by RNA polymerase
269 rapid amplification of long terminal repeat retrotransposons that occurred 38 million years ago in
273 we show that the tobacco (Nicotiana tabacum) retrotransposon Tnt1 efficiently transposes in P. patens
275 epresents a fitness strategy adopted by some retrotransposons to ensure transgenerational propagation
276 , and this is followed by mutations in these retrotransposons to evade repression, a cycle of events
279 , the host eventually finds a way to repress retrotransposon transcription and prevent further insert
280 not only controls the accumulation of Gypsy retrotransposon transcripts but also regulates the splic
282 hat the primordial germline is a hideout for retrotransposon transcripts, providing early access to f
283 ermediate products of Tn7 and retroviral and retrotransposon transposition, and may hint at a common
286 similar to that of Saccharomyces cerevisiae retrotransposons Ty1 and Ty3, which assemble virus-like
287 exameric lengths found in the unique XDP SVA retrotransposon using luciferase reporter constructs.
288 fusion points between the mRNAs and the LTR retrotransposons, we identified shared short similar seq
290 BEL/Pao-like long-terminal repeat (LTR) retrotransposons were annotated from the highly adaptabl
291 ociated with centromere, 45S rDNA, knob, and retrotransposons were found among groups, revealing glob
292 The majority of these elements derive from retrotransposons, which expand throughout the genome thr
293 inately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining per
294 es, they may be involved in the silencing of retrotransposons, which in brain have critical roles in
295 primarily by proteins encoded by LINE-1 (L1) retrotransposons, which mobilize in pluripotent cells ea
296 nce searches and PCR analyses show that this retrotransposon with LTRs (Long Terminal Repeats) is wid
297 , we observe a dynamic expression pattern of retrotransposons with three out of ten examined retrotra
298 ense insertion of a SINE-VNTR-Alu (SVA)-type retrotransposon within an intron of TAF1 This unique ins
299 f ASAR6 map to the antisense strand of an L1 retrotransposon within ASAR6 RNA, deletion or inversion
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