ライフサイエンスコーパス: rhizosphere

1 ceted role of the natural product within the rhizosphere.

2 ogical crust, root-attached, and the broader rhizosphere.

3 ting a greater capacity to mobilize P in the rhizosphere.

4 e chemistry and microbial composition of the rhizosphere.

5 tion of a beneficial rhizobacterium in their rhizosphere.

6 ferent bacterial assemblages in the root and rhizosphere.

7 industrial waste and a good colonizer of the rhizosphere.

8 mical cycles through interactions within the rhizosphere.

9 gnificantly promote mineral evolution in the rhizosphere.

10 vacuole, thereby limiting carbon loss to the rhizosphere.

11 lanacearum in microcosms and in tomato plant rhizosphere.

12 s to physical constraints present within the rhizosphere.

13 portion of their assimilated carbon into the rhizosphere.

14 interact with other organisms that share the rhizosphere.

15 pread in animal intestinal tracts and in the rhizosphere.

16 mycorrhizal roots than further out into the rhizosphere.

17 negative Betaproteobacteria that inhabit the rhizosphere.

18 tion of new secreting compounds found in the rhizosphere.

19 are also involved with communication in the rhizosphere.

20 r involvement with plant interactions in the rhizosphere.

21 Al(3+), Fe(3+), and Ca(2+) phosphates in the rhizosphere.

22 athering process of Ni-bearing phases in the rhizosphere.

23 discrete zone of influence, analogous to the rhizosphere.

24 uorescens isolates from surface soil and the rhizosphere.

25 omes limited by diffusive resistances in the rhizosphere.

26 ply of recent photosynthetic products in the rhizosphere.

27 oring plants and physical impediments in the rhizosphere.

28 caps and are released individually into the rhizosphere.

29 (1)(5)N over both space and time within the rhizosphere.

30 on competition of F. oxysporum in the tomato rhizosphere.

31 IapF exhibit competitive deficiencies in the rhizosphere.

32 ts that have reduced capacity to acidify the rhizosphere.

33 or to measure ammonium concentrations in the rhizosphere.

34 es to the persistence of strain 30-84 in the rhizosphere.

35 cient use of nitrogen sources present in the rhizosphere.

36 aqueous phytotoxic root exudate in the soil rhizosphere.

37 ype determines the taxa colonizing the beech rhizosphere.

38 carbon from the below-ground tissue into the rhizosphere.

39 bioreporter showed a high signal also in the rhizosphere.

40 g the release of diffusible signals into the rhizosphere.

41 of nutrients, in particular, nitrate, in the rhizosphere.

42 ole of different molecules secreted into the rhizosphere.

43 crusts), soil below biocrusts, and the plant rhizosphere.

44 e system being significantly enriched in the rhizosphere.

45 time exhibit phylogenetic over-dispersion in rhizosphere.

46 acterial community is formed and affected in rhizosphere.

47 cronutrients due to its high fixation in the rhizospheres.

48 plant species and be correlated within plant rhizospheres.

49 nzymes in the hyphosphere (118%) than in the rhizosphere (19%).

50 eater increase of N-releasing enzymes in the rhizosphere (215% increase) than in the hyphosphere (36%

51 abolomic analyses of the pea (Pisum sativum) rhizosphere, a suite of bioreporters has been developed

52 At the ecosystem scale, the rhizosphere accounted for c. 50% and 40% of the total ac

53 Transgenic plants displayed an enhanced rhizosphere acidification capacity consistent with the a

54 s, photoassimilate production and transport, rhizosphere acidification, and expression of sugar-induc

55 capacity and to play a role in root growth, rhizosphere acidification, and iron reductase activity i

56 h decreases of pH in the range achievable by rhizosphere acidification.

57 This study highlights the key role of the rhizosphere activity in Zn release in soil and demonstra

58 This indicates that the rhizosphere activity of A. capillaris mobilized Zn from

59 thousands of living cells into the incipient rhizosphere, also secretes a complex mixture of proteins

60 ognizing plant signal molecules in the plant rhizosphere and activating a regulon on the tumor-induci

61 ent, but increased both acidification of the rhizosphere and activity of the ferric chelate reductase

62 The communities of fungi and bacteria in the rhizosphere and bulk soil from the field experiment were

63 s in fungal and bacterial populations of the rhizosphere and bulk soil were associated with the devel

64 communities differ to a great degree between rhizosphere and bulk soils, regardless of the tree speci

65 is unclear how these plants access Fe in the rhizosphere and cope with high soil pH.

66 a survey of novel approaches to studying the rhizosphere and emerging opportunities to direct future

67 plants to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of pla

68 two geochemically distinct bulk soils and in rhizosphere and endophytic compartments prepared from ro

69 The maize rhizosphere and endosphere alpha-diversity was higher th

70 unity members, to release gallic acid in the rhizosphere and exacerbate the noxiousness of P. austral

71 eries related to molecules secreted into the rhizosphere and how they affect plant productivity, eith

72 ones acting as a signal to the fungus in the rhizosphere and lipochito-oligosaccharides acting as fun

73 elled in three ecological niches (bulk soil, rhizosphere and nodule) with a focus on the role of each

74 luded that sensing of six amino acids in the rhizosphere and perhaps extracellular peptides is couple

75 s are colonized on their surfaces and in the rhizosphere and phyllosphere by a multitude of different

76 In parallel greenhouse experiments, rhizosphere and phyllosphere microbiota of con- and hete

77 t plant species acquire Fe by acidifying the rhizosphere and reducing ferric to ferrous Fe prior to m

78 consecutive, selection of bacteria from the rhizosphere and root compartments.

79 n their extent of domestication and assessed rhizosphere and root endosphere bacterial and fungal com

80 the genomes of 33 strains isolated from the rhizosphere and root nodules of a particular bean variet

81 ed CO2 and O3 (eCO2 and eO3) the endosphere, rhizosphere and soil were sampled from soybeans under eC

82 that glutamate was rapidly depleted from the rhizosphere and that most (1)(5)N was captured by rhizob

83 actions of plants with microorganisms in the rhizosphere and the efficiency of nutrient acquisition.

84 ities involved in C, N, and P cycling in the rhizosphere and unplanted soil.

85 he soil, facilitate nutrient uptake from the rhizosphere, and participate in symbiotic plant-microbe

86 ty structure was analyzed in unplanted soil, rhizosphere, and plant roots by 454-pyrosequencing of th

87 re key players in acquisition of Pi from the rhizosphere, and their regulation is indispensable for t

88 Biotic interactions in the rhizosphere are biologically important, and although man

89 ons between plants and microorganisms in the rhizosphere are complex and varied.

90 ent changes with other microorganisms in the rhizosphere as a key step for understanding nutrient flo

91 f the detectable pore space (> 5 mum) in the rhizosphere, as compared with the no-hair mutants.

92 nces of taxa between bulk soil and the maize rhizosphere, as well as between fields.

93 Consequently, 318 rhizosphere-associated Pseudomonas fluorescens strains w

94 cture of root-associated EcM fungi, soil and rhizosphere bacteria) were used to analyse relationships

95 es to determine lineage-specific controls on rhizosphere bacteria.

96 ive mutualistic interactions may occur among rhizosphere bacteria; we identified quorum-based signall

97 r, in their natural environment, such as the rhizosphere, bacteria live in spatially structured open

98 lineage is crucial for determination of both rhizosphere bacterial communities and plant fitness.Envi

99 However, lineage and not rhizosphere bacterial communities dictate individual pla

100 Introduced P. australis rhizosphere bacterial communities have lower abundances

101 host lineage is crucial for determination of rhizosphere bacterial communities in Phragmites australi

102 The effect of hairy root transformation on rhizosphere bacterial communities was largely similar to

103 Neither root nor rhizosphere bacterial communities were affected by the e

104 OSR cropping frequency had no effect on rhizosphere bacterial communities.

105 ntify bacterial taxa and evaluate changes in rhizosphere bacterial communities.

106 to evaluate the influence of plant roots on rhizosphere bacterial communities.

107 ss, root tissue density, N concentration and rhizosphere bacterial community structure.

108 Here, we characterized the rhizosphere bacterial diversity of 27 modern maize inbre

109 select specific taxa and functions in their rhizosphere based on the soil conditions and their nutri

110 Symbiotic associations in the rhizosphere between plants and microorganisms lead to ef

111 compete for nutrients in soil and the plant rhizosphere but can also form a beneficial symbiosis wit

112 not change the microbial communities in the rhizosphere, but altered the soil communities where hybr

113 The Q8r1-96 T3SS was expressed in the rhizosphere, but mutants lacking a functional T3SS were

114 t heating reduced respiration from roots and rhizosphere by 25%.

115 n addition, GB03 causes acidification of the rhizosphere by enhancing root proton release and by dire

116 t heating reduced respiration from roots and rhizosphere by ~25%.

117 s in soil and sediment hotspots, such as the rhizosphere, by simultaneous observation of anionic and

118 e show that higher plant diversity increases rhizosphere carbon inputs into the microbial community r

119 of the organic acid, citrate, into the soil rhizosphere, chelating Al(3+) ions and thereby imparting

120 that enables the collection and analysis of rhizosphere chemicals from different plant species.

121 Rhizosphere chemistry is the sum of root exudation chemi

122 hat the method is suitable for profiling the rhizosphere chemistry of Zea mays (maize) in agricultura

123 bacteria with higher organisms - leading to rhizosphere colonization and modulating the virulence of

124 upregulated over fivefold (p </= 0.05) upon rhizosphere colonization and root adhesion respectively.

125 d throughout the symbiotic interaction, from rhizosphere colonization to differentiated mycorrhizas,

126 to investigate the degree to which root and rhizosphere communities were influenced by vertical tran

127 vasion resistance relationships in bacterial rhizosphere communities.

128 at act as semiochemicals and shape microbial rhizosphere communities.

129 unication among the different members of the rhizosphere community.

130 es are enriched in the bacteria found in the rhizosphere compared to the bulk soil.

131 ccharides in root exudates are important for rhizosphere competence in the insect pathogen Metarhiziu

132 in root exudate and were greatly reduced in rhizosphere competence on grass roots.

133 a functional T3SS were not altered in their rhizosphere competence.

134 essions in their growth response to physical rhizosphere constraints and competition.

135 Furthermore, the rhizosphere contained several organic molecules that wer

136 med on the roots of wetland plants and their rhizospheres create environmental conditions favorable f

137 We found that few of the plant species' rhizospheres demonstrated distinct stoichiometric proper

138 r watering, whereas it did not change in the rhizosphere, despite its much higher water retention.

139 A wide range of rhizosphere diazotrophic bacteria are able to establish

140 By identifying how rhizospheres differ among plant species, we can better a

141 er, the reduced availability of sugar in the rhizosphere due to SWEET2 activity contributes to resist

142 tribution and dynamics in the whole seagrass rhizosphere during experimental manipulation of light ex

143 Here we used the model soil- and rhizosphere-dwelling organism Pseudomonas putida KT2440

144 Then, using a numerical model that combines rhizosphere effect sizes with fine root morphology and d

145 A rhizosphere effect was observed in each soil type, but a

146 one of plants, this phenomenon, known as the rhizosphere effect, is poorly understood.

147 nts in the growth system support a microbial rhizosphere effect.

148 n; this is a newly observed mechanism of the rhizosphere effect.

149 ates provides an abiotic contribution to the rhizosphere effect.

150 position, the ecosystem consequences of such rhizosphere effects have rarely been quantified.

151 he field prevent the addressing of real-time rhizosphere effects that regulate nutrient cycling and S

152 le carbon sources and unfavourable pH in the rhizosphere/egg-mass environment may compromise nematode

153 aphid populations on barley when the barley rhizosphere either was or was not supplemented with a rh

154 dates extend systemic defense loops into the rhizosphere, enhancing or reducing recruitment of microb

155 rial survival in highly competitive soil and rhizosphere environments.

156 nopy tree species and other biota and favors rhizosphere food web.

157 The rhizospheres from maize inbreds exhibited both a small b

158 undance taxa may significantly contribute to rhizosphere function.

159 r water balance, carbon storage, and related rhizosphere functions.

160 However, the rhizosphere fungal communities from continuously grown O

161 ranscribed spacer 2, we studied the root and rhizosphere fungal communities of A. alpina growing unde

162 domestication did affect the composition of rhizosphere fungal communities.

163 he HSP90 inhibitor monocillin I (MON) by the rhizosphere fungus Paraphaeosphaeria quadriseptata affec

164 on in other niches, including soil and plant rhizosphere habitats.

165 The rhizosphere had elevated C, N, Mn, and Fe concentrations

166 n those in surrounding soils, indicating the rhizosphere has a greater potential for interactions and

167 However, researching the undisturbed rhizosphere has proved very challenging.

168 undreds of these molecules secreted into the rhizosphere have been identified, and their functions ar

169 ugh their activities as root exudates in the rhizosphere; however, it is now clear that they have man

170 The microbiota colonizing the rhizosphere (immediately surrounding the root) and the e

171 th O2 microsensors or partial mapping of the rhizosphere in close contact with a planar O2 optode.

172 and Anaeromyxobacter) became dominant in the rhizosphere in macrophyte and macrophyte-SMFC treatments

173 Initially known for their role in the rhizosphere in stimulating the seed germination of paras

174 on and role of C-containing compounds in the rhizosphere, in particular those involved in chemical co

175 MA secretion in the rhizosphere increased beneficial rhizobacteria Bacillus

176 ation of acidophilic bacteria in the wetland rhizosphere indicate that multiple interacting processes

177 rees excreted 50% more chloride ion into the rhizosphere, indicative of increased TCE metabolism in p

178 oot tips act as local sensors that integrate rhizosphere information into global root architectural c

179 ovel decontamination strategies based on the rhizosphere interactions between plants and their microb

180 ion have received little study, particularly rhizosphere interactions, in planta transformations, and

181 s a powerful tool to approach issues of root-rhizosphere interactions, such as ion transport and nutr

182 biosynthesis, and role of waxes at the root-rhizosphere interface.

183 ilability of inorganic phosphate (Pi) in the rhizosphere is a common challenge to plants, which activ

184 The rhizosphere is a critical interface supporting the excha

185 d function of specialized metabolites in the rhizosphere is a key element in understanding interactio

186 L transport within the plant and towards the rhizosphere is driven by the ABCG-class protein PDR1.

187 he complex plant-microbe interactions in the rhizosphere is still in its infancy.

188 The rhizosphere is teemed with organisms that coordinate the

189 The rhizosphere is the zone of soil influenced by a plant ro

190 cological stoichiometry among plant species' rhizospheres is a high-resolution tool useful for linkin

191 m, the two principal nitrogen sources in the rhizosphere, is variable and many species require a bala

192 lease was visualized and analyzed on a whole rhizosphere level, which is a substantial improvement to

193 acteria and discusses their relevance to the rhizosphere lifestyle.

194 Roots and rhizosphere materials were examined by X-ray absorption

195 er and activity of E. coli O157 cells in the rhizosphere may be a consequence of them not being able

196 nd their effect on metal availability in the rhizosphere may be of larger importance for metal accumu

197 o the molecular characteristics of OM in the rhizosphere may in part be responsible for the enhanced

198 Mutualistic rhizosphere microbes of the S. ericoidesPR population ma

199 e mutualistic association between plants and rhizosphere microbes.

200 nfection and for mutualist associations with rhizosphere microbes.

201 ts to establish beneficial associations with rhizosphere microbes.

202 ns were adapted or maladapted to their local rhizosphere microbial communities by growing seedlings s

203 Root and rhizosphere microbial communities can affect plant healt

204 resses the interactions of plants with their rhizosphere microbial communities.

205 Rhizodeposits play a key role in shaping rhizosphere microbial communities.

206 r, it is uncertain if and how they influence rhizosphere microbial communities.

207 Rhizosphere microbial diversity is influenced by the phy

208 Here, we review how plants shape the rhizosphere microbiome and how domestication may have im

209 lus tremula x Populus alba) on the bacterial rhizosphere microbiome and the endosphere microbiome, na

210 iome and how domestication may have impacted rhizosphere microbiome assembly and functions via habita

211 Only the rhizosphere microbiome composition of the soybeans chang

212 s, rotation sequence had a greater effect on rhizosphere microbiome composition, with larger effects

213 The rhizosphere microbiome is pivotal for plant health and g

214 In contrast, the rhizosphere microbiome of CCR-deficient and WT poplar tr

215 ty, a previously undescribed property of the rhizosphere microbiome, appears to be a defining charact

216 its surrounding microbiology, the so-called rhizosphere microbiome, through the creation of specific

217 the toposequence, we identified a core beech rhizosphere microbiome.

218 e primarily water-limited, compared with the rhizosphere microbiota that were co-limited by nutrients

219 s suggest that phyllosphere microbiota, like rhizosphere microbiota, can potentially mediate plant sp

220 Rhizosphere networks were substantially more complex tha

221 omonas fluorescens on C and N cycling in the rhizosphere of a common grass species under eCO(2).

222 ment of specific bacterial taxa found in the rhizosphere of a given plant species changes with differ

223 efficiently colonizes the leaf surfaces and rhizosphere of a range of plants.

224 Bacteria that inhabit the rhizosphere of agricultural crops can have a beneficial

225 imaging of chemical microenvironments in the rhizosphere of aquatic plants at high spatiotemporal res

226 ession leading to increased MA titers in the rhizosphere of Arabidopsis (Arabidopsis thaliana).

227 (i) In the rhizosphere of E. pithyusa, Zn was found to exist in dif

228 fication of the nitrate concentration in the rhizosphere of experimental plants, a calibration curve

229 noculation with Ni-resistant bacteria in the rhizosphere of L. emarginata had no significant effect o

230 -activated citrate exudation response at the rhizosphere of maize roots.

231 onging to the genus Trichoderma colonize the rhizosphere of many plants, resulting in beneficial effe

232 ment to analyze bacterial communities in the rhizosphere of P. australis stands from native, introduc

233 The cultivar effect was also evident in the rhizosphere of plants grown in compost, which suggests t

234 a ambifaria is generally associated with the rhizosphere of plants where it has biocontrol effects on

235 acterial communities in the phyllosphere and rhizosphere of plants, a more detailed understanding of

236 . fluorescens SBW25 that is expressed in the rhizosphere of sugar beet plants.

237 thering of a Ni-bearing mineral phase in the rhizosphere of the Ni-hyperaccumulator Leptoplax emargin

238 mposition, are significantly enhanced in the rhizospheres of diverse vegetation types.

239 The rhizosphere OM molecules generally had (1) greater overa

240 of CO(2) effects on enzyme activities in the rhizosphere only.

241 total reduction of Cr(VI) to Cr(III) in the rhizosphere or just after uptake in the fine lateral roo

242 Trees and their associated rhizosphere organisms play a major role in mineral weath

243 ed prokaryotic and fungal communities in the rhizosphere, phyllosphere, leaf and root endosphere, as

244 To this end, they release into the rhizosphere phytotoxic substances that inhibit the germi

245 e compare the temporal changes to the intact rhizosphere pore structure during the emergence of a dev

246 This 'rhizosphere pore structure' and its impact on associated

247 with concomitant phosphate release into the rhizosphere porewater.

248 t growth-promoting bacteria and fungi in the rhizosphere prime the whole plant body for enhanced defe

249 obal change may hinge on the balance between rhizosphere priming and SOM protection, and highlight th

250 The rhizosphere priming effect (RPE) is a mechanism by which

251 The model accurately predicted rhizosphere processes and C-N dynamics across a gradient

252 Collectively, our results indicate that rhizosphere processes are a widespread, quantitatively i

253 in future research include the influence of rhizosphere processes on uptake, determining mechanisms

254 Soil microbial H2 uptake was correlated with rhizosphere respiration rates (r = 0.8, P < 0.001), and

255 in Rsoil likely reflected increased root and rhizosphere respiration rather than increased microbial

256 Finally, we propose that "soil-rhizosphere-rhizoplane-endophytes-plant" could be consid

257 , we assembled protein-coding reads from the rhizospheres (RHZ) of two arid land grasses.

258 operties at the tissue, organ, organism, and rhizosphere scales.

259 These images of the poplar rhizosphere showed evidence for symbiotic sharing of nut

260 ) composition and microbial communities of a rhizosphere soil (primarily an oxidized environment) to

261 ococcal strain of bacteria that grows in the rhizosphere soil around the coca plant and has been foun

262 Rhizosphere soil fractions tightly associated with roots

263 Rhizosphere soil inoculum from the S. ericoidesPR popula

264 nt microhabitats at the soil-root interface: rhizosphere soil, rhizoplane, and endorhizosphere.

265 ehensive metabolite profiling of non-sterile rhizosphere soil, which represents a technical advance t

266 ntargeted metabolic profiling of non-sterile rhizosphere soil.

267 ot interior), rhizoplane (root surface), and rhizosphere (soil close to the root surface), each of wh

268 me activity from soil adjacent to root tips (rhizosphere), soil adjacent to hyphal tips (hyphosphere)

269 ue to the inherent heterogeneity of the rice rhizosphere soils, deployment of DGT in dried and homoge

270 the physical and chemical properties of the rhizosphere, some of which are determined by the genetic

271 rescent coumarins that are released into the rhizosphere, some of which possess Fe(III)-mobilizing ca

272 trient ratios and components of below-ground rhizosphere stoichiometry predominantly differed between

273 as fluorescens Q8r1-96 represents a group of rhizosphere strains responsible for the suppressiveness

274 In the case of the rhizosphere, temperature, pH, and the presence of chemic

275 signals obtained from various sources in the rhizosphere that give an indication of the nutrient stat

276 nt roots play a dominant role in shaping the rhizosphere, the environment in which interaction with d

277 osure to high ammonium concentrations in the rhizosphere, the high-affinity ammonium transporters (AM

278 Recent research has shown that the rhizosphere, the zone near plant roots, in wetlands is e

279 ed the main bacterial taxa of burnt holm-oak rhizosphere, then we obtained an isolate collection of t

280 ive and subvert the acidic conditions of the rhizosphere to an important signal that initiates and di

281 umulated to sufficient concentrations in the rhizosphere to induce zoospore encystment and thereby de

282 rate their below-ground tissue and immediate rhizosphere to prevent sulfide intrusion from the surrou

283 Plants engineer the rhizosphere to their advantage by secreting various nutr

284 The rhizospheres under the C4 grass B. dactyloides exhibited

285 O2 distribution and dynamics in the seagrass rhizosphere upon environmental changes and thereby ident

286 ntial nutrients iron and phosphorus in their rhizosphere via multiple biogeochemical pathways.

287 es mobilize phosphorus and iron within their rhizosphere via plant-induced local acidification, leadi

288 The soybean rhizosphere was enriched in Proteobacteria and Bacteroid

289 However, the influence of cultivar in the rhizosphere was the opposite to that in the phyllosphere

290 wed that Zn availability in the flooded rice rhizospheres was greatly diminished compared to that of

291 ng soils, plants and microbes inhabiting the rhizosphere, we hypothesized that soil nutrient and micr

292 Using intact plant species-specific rhizospheres, we examined soil C : N : P, microbial biom

293 ding 11 dominant phyla (>1%) in E. splendens rhizosphere were presented.

294 itu deployments of DGT in flooded paddy rice rhizospheres were compared with a laboratory DGT assay o

295 situ expression of these antibiotics in the rhizosphere where bacterial cells naturally colonize roo

296 t interior of healthy plants, as well as the rhizosphere, which consists of soil particles firmly att

297 In the rhizosphere, which includes plant roots and the surround

298 ecreased pathogen colonization in the banana rhizosphere, which plays an important role in the manage

299 KT2440, a competitive coloniser of the maize rhizosphere with plant-beneficial traits.

300 n of ZnS (enriched in light isotopes) in the rhizosphere with subsequent Zn(2+) sorption on the root