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6 hacid subfamily Delphacinae based on nuclear ribosomal and mitochondrial DNA sequences of four geneti
7 oretic analysis shows that compared to other ribosomal antibiotics, MTM and PKM prevent synthesis of
8 fficiency of this synthesis, suggesting that ribosomal architecture has been shaped by evolutionary p
9 brought to our current understanding of the ribosomal assembly process in bacteria using previous de
10 of G3BP1 do not occur solely through RNA or ribosomal binding but require both the RRM and RGG domai
13 ighly preferred specimen orientation, and of ribosomal biogenesis intermediates, which adopt moderate
14 and the target of rapamycin (TOR)-regulated ribosomal biogenesis pathway, which might underlie a cel
16 Despite robust inhibition of the dynamic ribosomal biogenesis response to IGF-1, myotube diameter
18 perones on protein folding and show that the ribosomal chaperone trigger factor acts as a mechanical
21 ation and (iii) dissociates post-termination ribosomal complexes that are devoid of the nascent pepti
22 have identified mutations in genes encoding ribosomal components in Mycobacterium smegmatis that con
24 nd RF2 induces conformational changes in the ribosomal decoding centre that are similar to those seen
25 es of the nucleobases, and the mechanisms of ribosomal decoding contributed to the position-dependent
27 al footprints on coding sequences, 5' leader ribosomal densities, distribution of ribosomes along cod
28 erns of apoptosis and associated dynamics of ribosomal disassembly, calcium overload and mitochondria
29 y elevated H3.3 occupancy, including the 45S ribosomal DNA (45S rDNA) loci, where loss of ATRX result
30 liana, 45S rRNA genes are found in two large ribosomal DNA (rDNA) clusters and little is known about
31 etrotransposons, and noncoding RNAs from the ribosomal DNA (rDNA) intergenic spacers, consistent with
32 lar mechanisms for SUMO-dependent control of ribosomal DNA (rDNA) silencing through the opposing acti
33 plify nucleolar targeting of FGFR2, activate ribosomal DNA (rDNA) transcription and delay differentia
36 ves of silencing loss in the heterochromatic ribosomal DNA during the early phases of aging, followed
38 nscribed spacer (ITS) as one part of nuclear ribosomal DNA is one of the most extensively sequenced m
39 ernal transcribed spacer (ITS) region of the ribosomal DNA is the conventional marker region for fung
41 rk of Theaceae based on plastome and nuclear ribosomal DNA sequence data, the temporal history of the
42 munity production, with high-throughput 18 S ribosomal DNA sequencing to elucidate the relationship b
44 ynthesis, ribonucleotide levels, and affects ribosomal DNA stability, leading to the formation of a n
46 omponents fail to assemble in the absence of ribosomal DNA, whereas the thermodynamically driven comp
47 components differ in their requirements for ribosomal DNA; the two actively assembling components fa
49 biophysical modeling, we determined that the ribosomal footprint extends 13 nucleotides into the N-te
50 ture overlaps or partially overlaps with the ribosomal footprint, the free energy to unfold only the
51 translational response, including density of ribosomal footprints on coding sequences, 5' leader ribo
54 d of the gag gene performing a programmed -1 ribosomal frameshift event to enter the overlapping pol
55 d related alphaviruses utilize programmed -1 ribosomal frameshifting (-1 PRF) to synthesize the viral
58 shift/slippage site, which is important for ribosomal frameshifting, is shown here to limit reverse
63 le variable (V) regions of the bacterial 16S ribosomal gene, to interrogate microbial profiles in ter
64 mosomes combined with cytogenetic mapping of ribosomal genes and Hox paralogs and with microsatellite
65 xecuted, the suppression of transcription of ribosomal genes and upregulation of lineage-specific fac
66 . pulchra mitochondrial genome contains both ribosomal genes, 21 tRNAs, but only 11 protein-coding ge
69 immunogenic peptide within the mycobacterial ribosomal large subunit protein RplJ, encoded by the Rv0
74 nascent peptides that remain stalled in 60S ribosomal particles due to a dysfunction in translation
77 protein synthesis and they also serve in non-ribosomal pathways for regulation and signaling metaboli
81 ons that upregulate transcription of the non-ribosomal peptide synthetase gene required for nidulanin
82 ved in the posttranslational modification of ribosomal peptides, and transferases from various biosyn
84 ion reveals that ubiquitylation of defective ribosomal products is rate limiting in generating class
87 abortive RNA in initiation from short-lived ribosomal promoter OCs are well described by a quantitat
90 most often due to heterozygous mutations in ribosomal protein (RP) genes that lead to defects in rib
93 -dependent upregulation of mitochondrial 37S ribosomal protein 1/ATP-binding cassette subfamily C mem
94 logical culture, nucleic acid amplification, ribosomal protein characterization, and genome sequencin
96 RNA molecules dominate the mass and why the ribosomal protein content is divided into 55-80 small, s
97 gulates nutrient-dependent downregulation of ribosomal protein encoding RNAs, leading to the redistri
98 cation of CD4(+) T cell responses to defined ribosomal protein epitopes expands the range of antigeni
99 ignature, which is associated with defective ribosomal protein function and linked to the erythroid l
100 t of cells appears to decouple expression of ribosomal protein genes from the environmental stress re
101 bundant class of intron-containing RNAs (the ribosomal protein genes) to Mer1-regulated transcripts.
102 dates identified in this search included two ribosomal protein genes, RPL35a and RPL23, and ferredoxi
103 p of human disorders most commonly caused by ribosomal protein haploinsufficiency or defects in ribos
106 conventional organelles, colocalize with the ribosomal protein L22, and cluster the WNK signaling pat
108 iptomic analyses show progressive changes in ribosomal protein levels and mitochondrial function as e
109 ities were also correlated with the cellular ribosomal protein levels, thereby suggesting that mRNA p
110 ppressed the expression of the mitochondrial ribosomal protein MRPS10 and reduced 12S ribosomal RNA (
112 LARP4 is a posttranscriptional regulator of ribosomal protein production in mammalian cells and sugg
113 duration of feast and the allocation of the ribosomal protein reserve to maximize the overall gain i
116 binds within the carboxy-terminal domain of ribosomal protein S1 (RpsA) and inhibits trans-translati
120 rt novel immunosuppressive properties of the ribosomal protein S19 (RPS19), which is upregulated in h
124 IL-7 treatment increased levels of phospho-ribosomal protein S6 in HIV-specific CD8 T cells, sugges
125 of mammalian target of rapamycin complex 1, ribosomal protein S6 kinase 1, and eukaryotic translatio
126 lular signal-regulated kinase) and S6K-RPS6 (ribosomal protein S6 kinase-ribosomal protein S6) axes.
127 es expressed higher levels of phosphorylated ribosomal protein S6 than paired fibroblasts from normal
130 olecular dynamics simulations show that each ribosomal protein switches the 16S conformation and damp
133 ere we report that ubiquitination of the 40S ribosomal protein uS10 by the E3 ubiquitin ligase Hel2 (
134 s mediated by an interaction with a specific ribosomal protein, RACK1, and that an increase in cytopl
137 folding and local autonomy of assembly with ribosomal proteins (rProteins), and that the rProtein an
138 ation in eukaryotes created paralog pairs of ribosomal proteins (RPs) that show high sequence similar
139 rocess that involves the ordered assembly of ribosomal proteins and numerous RNA structural rearrange
141 e nuclear import of approximately 80 nascent ribosomal proteins and the elimination of excess amounts
145 ble for import can maintain the stability of ribosomal proteins by neutralizing unfavorable positive
146 control that involves the ubiquitination of ribosomal proteins by the E3 ubiquitin ligase Hel2/RQT1.
147 osomes drive cell growth, but translation of ribosomal proteins competes with production of non-ribos
151 munoprecipitates with RNA polymerase I, with ribosomal proteins RPL26 and RPL24, and with components
153 osomes involves the hierarchical addition of ribosomal proteins that progressively stabilize the fold
155 le molecule FRET to show how combinations of ribosomal proteins uS4, uS17 and bS20 in the 16S 5' doma
157 ransferase center, and stable association of ribosomal proteins with rRNA surrounding the polypeptide
159 d iPSS in the polycistronic operons encoding ribosomal proteins, and the majority upstream and proxim
160 on and metabolism, as well as those encoding ribosomal proteins, DNA and histone-modifying enzymes an
161 er acetylation occupancy and lower levels of ribosomal proteins, including those involved in ribosome
162 ncing of Rps19, but not several other tested ribosomal proteins, indicating distinct cellular respons
164 lision in vivo resulted in ubiquitination of ribosomal proteins, suggesting that collision is sensed
165 that encode translation machinery, including ribosomal proteins, was upregulated during the T cell cl
171 ocesses: RNA processing; gene transcription; ribosomal proteins; protein degradation; and metabolism
172 nd yUtp23/hUTP23 are essential for early pre-ribosomal (r)RNA cleavages at sites A0, A1/1 and A2/2a i
174 results, the proximity of the 3' end to the ribosomal recruitment site of the mRNA could induce a fe
175 S RNA binding domain and G3BP1 RNA (RRM) and ribosomal (RGG) binding domains showed that sigmaNS asso
177 2 domains of the large subunit (LSU) nuclear ribosomal RNA (nrRNA) gene and by morphological characte
178 e in ribosome biogenesis, functioning in pre-ribosomal RNA (pre-rRNA) processing as a component of th
181 ite-specific endonucleolytic cleavage in 25S ribosomal RNA (rRNA) adjacent to the c loop of the expan
182 unit has been built de novo and includes 15S ribosomal RNA (rRNA) and 34 proteins, including 14 witho
183 tuberculosis (Mtb) possess species-specific ribosomal RNA (rRNA) expansion segments and ribosomal pr
184 ial ribosomal protein MRPS10 and reduced 12S ribosomal RNA (rRNA) expression, suggesting mitochondria
185 gal molecular diversity (small subunit (SSU) ribosomal RNA (rRNA) gene sequences) in field samples.
186 d-collected Helicoverpa zea larvae using 16S ribosomal RNA (rRNA) gene sequencing and matrix-assisted
189 een studied in detail, little is known about ribosomal RNA (rRNA) structural rearrangements that take
190 enesis and identified a role for this GEF in ribosomal RNA (rRNA) synthesis that is mediated by Rac1
191 tes with Grc3-Rat1-Rai1 to process precursor ribosomal RNA (rRNA), yet its mechanism of action remain
193 ogenome contained 13 protein coding genes, 2 ribosomal RNA and 22 transfer RNA genes, and a control r
195 nomic units were pyrosequenced targeting 16S ribosomal RNA and volatile organic compounds determined
196 The probe incorporated into the bacterial ribosomal RNA decoding site, fluorescently reports antib
197 complete nuclear transcriptome, including a ribosomal RNA degradation procedure that minimizes pre-r
198 to the most-likely IDs, (iii) comprehensive ribosomal RNA filtering for accurate mapping of exogenou
199 emistry to detect mucin 2, as well as by 16S ribosomal RNA fluorescence in situ hybridization, transc
200 n of fecal microbiota were determined by 16S ribosomal RNA gene amplicon sequencing, and metabolite p
202 By applying metabolomic and metagenomic (16S ribosomal RNA gene and whole-genome shotgun sequencing)
204 xonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed across multi
207 -cell diversity of the usually conserved 16S ribosomal RNA gene, we suggest that gene conversion occu
211 cox1-3, nad1-6, nad4L, atp6 and cob) and two ribosomal RNA genes (rrnL and rrnS), but the atp8 gene w
212 ng nested polymerase chain reaction (PCR) of ribosomal RNA genes and a novel assay that amplifies a c
214 sponding to active transposons, CRISPR loci, ribosomal RNA genes, rolling circle origins of replicati
215 cale features of ribosomes-such as why a few ribosomal RNA molecules dominate the mass and why the ri
216 modulation factor (PA3049), is required for ribosomal RNA preservation during prolonged nutrient sta
217 nd organism viability because of its role in ribosomal RNA processing and protein synthesis, which is
218 identified a 3' to 5' exoribonuclease, RRP6 (ribosomal RNA processing protein 6), as a CELF1-interact
219 ts derived from healthy individuals and that ribosomal RNA production increases with age, indicating
220 that host-derived RNAs, most prominently 5S ribosomal RNA pseudogene 141 (RNA5SP141), bound to RIG-I
222 heral blood mononuclear cells as well as 16S ribosomal RNA sequencing data from bronchoalveolar lavag
223 House dust microbiome analysis using 16S ribosomal RNA sequencing identified 202 and 171 bacteria
227 creases upstream binding factor recruitment, ribosomal RNA synthesis, ribonucleotide levels, and affe
230 is derived from Salmonella 5'-leader of the ribosomal RNA transcript and has a 'stem' structure-cont
231 F13 1A is a nucleolar protein that represses ribosomal RNA transcription and attenuates protein synth
232 nities in fecal samples were profiled by 16S ribosomal RNA-based polymerase chain reaction-temporal t
233 cRNA expression from both simulated and real ribosomal RNA-depleted (rRNA-depleted) RNA-seq datasets.
237 s that are peculiar to specific positions in ribosomal RNAs and that are stabilized by tertiary inter
238 ous studies have identified p90 subfamily of ribosomal S6 kinase (p90RSK) family kinases as key facto
239 leading to increased phosphorylation of p90-ribosomal S6 kinase (RSK) and a concomitant activation o
240 tracellular signal-regulated kinase 1/2, and ribosomal S6 kinase 1 signal transduction pathways and s
241 t extracellular signal-regulated kinase 1/2, ribosomal S6 kinase 1, or cAMP responsive element bindin
243 inhibitor, GDC-0941, targeted the downstream ribosomal S6 kinase phosphorylation to significantly sup
245 of mitogen-activated protein kinase kinase, ribosomal S6 kinase, and cyclin-dependent kinase 1/2 in
246 g p70 S6-kinase, glycogen synthase kinase-3, ribosomal S6 kinase, c-Jun, and cAMP response element bi
247 B cells was regulated by an ERK1/2- and p90 ribosomal S6 kinase-dependent mechanism, unlike in macro
248 ibition of the proteasome (by MG-132) or p90 ribosomal S6 kinases (by BI-D1870) is further increased
250 aled that the increase in phosphorylation of ribosomal S6 was mediated by BLT-1 in healthy subject ne
252 al to that of the parent yet displays better ribosomal selectivity, predictive of an enhanced therape
253 ed for allo-HCT was profiled by means of 16S ribosomal sequencing of prospectively collected stool sa
254 roteins are part of a structure known as the ribosomal stalk and help orchestrate the elongation phas
257 on were reduced, indicative of mitochondrial ribosomal stress and increased transforming growth facto
259 patients show defective rRNA processing and ribosomal stress features such as reduced proliferation,
260 neurons Zika virus (ZIKV) infection leads to ribosomal stress that is characterized by structural dis
264 nt the near-atomic structures of the Mtb 50S ribosomal subunit and the complete Mtb 70S ribosome, sol
265 the protein composition of various yeast 60S ribosomal subunit assembly intermediates has been studie
268 ganizes the assembly of the eukaryotic small ribosomal subunit by coordinating the folding, cleavage,
271 insufficiency of Mrpl40 (mitochondrial large ribosomal subunit protein 40) as a contributor to abnorm
272 serine/threonine residues in the human small ribosomal subunit protein, receptor for activated C kina
274 peptidyl-tRNA enters the P site of the small ribosomal subunit via reversible, swivel-like motions of
275 the nascent peptide exit tunnel of the large ribosomal subunit with comparable affinities, the bacter
276 elongation', 'translation factor activity', 'ribosomal subunit' and 'phosphorelay signal transduction
281 ropose that rRNAs not packaged into complete ribosomal subunits are polyadenylated by the poly(A) pol
282 ient peptide segments from the cores of both ribosomal subunits enhance RNA polymerase ribozyme (RPR)
283 neighboring proline residue resulting in 40S ribosomal subunits that were blocked from polysome forma
285 e proteins depends on interactions with both ribosomal subunits, some portion of 30S and 50S assembly
290 ed drug candidate is described that inhibits ribosomal synthesis of PCSK9, a lipid regulator consider
292 ed in critical binding interactions with the ribosomal target, is replaced by an apramycin-like dioxa
293 cts of mutations, C-terminal extensions, and ribosomal tethering on the structure and stability of th
297 iation with this motif upon emergence at the ribosomal tunnel exit requires ribosome-associated compl
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