ライフサイエンスコーパス: ribosomal RNA gene

1 n analyses of other data sets (e.g., the 18S ribosomal RNA gene).

2 hain reaction (PCR) assays targeting the 16S ribosomal RNA gene.

3 focused on the MPa adhesion gene and the 16S ribosomal RNA gene.

4 mplification and sequencing of bacterial 16S ribosomal RNA gene.

5 abundant in the nontranscribed region of the ribosomal RNA gene.

6 n and sequencing of the V4 region of the 16S ribosomal RNA gene.

7 d by 454-pyrosequencing of the bacterial 16S ribosomal RNA gene.

8 identity was confirmed by sequencing the 16s ribosomal RNA gene.

9 on was confirmed using sequencing of the 16S ribosomal RNA gene.

10 eq sequencing of the V4-V5 region of the 16S ribosomal RNA gene.

11 ag sequencing of the V3-V5 region of the 16S ribosomal RNA gene.

12 n, and infant stool by sequencing of the 16S ribosomal RNA gene.

13 h-throughput sequencing of the bacterial 16S ribosomal RNA gene.

14 terial levels by quantitative PCR of the 16S ribosomal RNA gene.

15 3 hypervariable region of the bacterial 16 s ribosomal RNA gene.

16 in the H. pylori chromosome but numerous in ribosomal RNA genes.

17 ibosomal DNA to repress the transcription of ribosomal RNA genes.

18 unction with phylogenies that track with the ribosomal RNA genes.

19 o the Roche Amplicor PCR assay targeting 16s ribosomal RNA genes.

20 gulated at the level of transcription of the ribosomal RNA genes.

21 ated through the sequencing of small subunit ribosomal RNA genes.

22 uencing of the V1-V3 region of bacterial 16S ribosomal RNA genes.

23 geting the Rpd3L/Sin3L complex for silencing ribosomal RNA genes.

24 sequences of the mitochondrial small subunit ribosomal RNA gene (16S rDNA; rns).

25 nd mitochondrial gene, the large-subunit 16S ribosomal RNA gene (16S), showed little deviation from n

26 Complete small subunit ribosomal RNA gene (18S rDNA) sequence analysis was used

27 Acanthamoeba into genotypes based on nuclear ribosomal RNA gene (18S rDNA, Rns) sequences.

28 F1 prevents antisense transcription over the ribosomal RNA genes, a process which we here show to be

29 ealed by the highly fragmented mitochondrial ribosomal RNA genes also appears to have originated at t

30 16S ribosomal RNA gene amplicon pyrosequencing and HPV DNA t

31 easured, and microbiota were analyzed by 16S ribosomal RNA gene amplicon pyrosequencing.

32 n of fecal microbiota were determined by 16S ribosomal RNA gene amplicon sequencing, and metabolite p

33 In human beings, 16S ribosomal RNA gene analyses showed an increased proporti

34 16S ribosomal RNA gene analysis demonstrated that dusp6-defi

35 ed by sequencing the V3/V4 region of the 16S ribosomal RNA gene and by hierarchical clustering.

36 PCR) amplification of the P. jirovecii mtLSU ribosomal RNA gene and immunofluorescence microscopy (IF

37 By applying metabolomic and metagenomic (16S ribosomal RNA gene and whole-genome shotgun sequencing)

38 o genomes, (iv) pairwise identity of the 16S ribosomal RNA genes and (v) pairwise identity of an addi

39 within the 14,100 basepairs (bp) are the two ribosomal RNA genes and 13 protein coding genes typical

40 ng nested polymerase chain reaction (PCR) of ribosomal RNA genes and a novel assay that amplifies a c

41 to the internal promoter element of the 5 S ribosomal RNA genes and acts as a positive transcription

42 rn blots probed with chloroplast and nuclear ribosomal RNA genes and end-labeled restriction fragment

43 ith RNA Polymerase I, associates with active ribosomal RNA genes and is required for serum-induced ac

44 e blocks and functional elements such as the ribosomal RNA genes and the centromeres, are largely ina

45 ts with data sets of sequenced bacterial 16S ribosomal RNA genes and total-faecal-community DNA.

46 primers were used to amplify regions of 16S ribosomal RNA genes, and amplicons were sequenced using

47 bosomal DNA, the mating type locus, tRNA, 5S ribosomal RNA genes, and genes that are highly transcrib

48 and tRNA(Ile) located downstream of the two ribosomal RNA genes, and upstream of where they are typi

49 s in the nontranscribed spacer 3' of the 35S ribosomal RNA gene are important to the polar arrest of

50 of nucleotide substitution in mitochondrial ribosomal RNA genes are described and applied in a phylo

51 All 13 protein-coding genes and the two ribosomal RNA genes are of similar sizes to those found

52 Ribosomal RNA genes are organized in tandem arrays calle

53 and meiotic recombination between the tandem ribosomal RNA gene array (rDNA).

54 Microbiologists utilize ribosomal RNA genes as molecular markers of taxonomy in

55 ntact animals exposed to 5-HT identified the ribosomal RNA genes as PARP-dependent effector genes.

56 unique sites in the small and large subunit ribosomal RNA genes (as of February 2002).

57 ined the cytosine methylation content of the ribosomal RNA genes at the two nucleolus organizer regio

58 IA-dependent transcription of the Xenopus 5S ribosomal RNA gene but not TFIIIA-independent transcript

59 protein that regulates expression of the 5 S ribosomal RNA gene by binding specifically to the intern

60 We also show that repression of ribosomal RNA genes by JHDM1B is dependent on its JmjC d

61 nded dramatically owing to the sequencing of ribosomal RNA genes cloned from environmental DNA.

62 rial lineage that contains SAR11 and related ribosomal RNA gene clones was among the first groups of

63 h altered frequencies of DSBs (including the ribosomal RNA gene cluster) are known targets of Sir2p d

64 e highly repeated, highly self-similar human ribosomal RNA gene clusters as sentinel biomarkers for d

65 ually all bacteria have the highly expressed ribosomal RNA genes co-directional with replication.

66 quencing of a 284-basepair region of the 16S ribosomal RNA gene confirmed that the sequence is closel

67 multaneous visualization of two sets of four ribosomal RNA genes confirms tetraploidy of this clone.

68 o determine the extent of human variation in ribosomal RNA gene content (rDNA) and patterns of rDNA c

69 e Carl Woese reported in PNAS how sequencing ribosomal RNA genes could be used to distinguish the thr

70 ased procedure, PCR amplification of the 16S ribosomal RNA gene coupled with very deep sequencing of

71 The most abundant class of bacterial ribosomal RNA genes detected in seawater DNA by gene clo

72 There are 55 putative genes: three ribosomal RNA genes, eight transfer RNA genes, 22 protei

73 D2 in the methylation-mediated inhibition of ribosomal RNA gene expression.

74 inds the promoter and coding regions of most ribosomal RNA genes, facilitating transcription and poss

75 r 1alpha and the mitochondrial small subunit ribosomal RNA genes for F. oxysporum strains from banana

76 (20 out of 36), or PCR amplification of the ribosomal RNA gene from feces with T. foetus-specific pr

77 Culture-independent surveys based on ribosomal RNA genes from deep-sea hydrothermal deposits

78 d rRNA assembly tool, REAGO (REconstruct 16S ribosomal RNA Genes from metagenOmic data).

79 Previous studies indicated that ribosomal RNA genes from one parental origin are epigene

80 f the hypervariable regions V1-V3 of the 16S ribosomal RNA gene had greater accuracy than sequencing

81 A 16S ribosomal RNA gene has been sequenced from Heliobacteriu

82 DNA sequencing of the ribosomal RNA genes has been used to identify these para

83 Bichir mitochondrial protein-coding and ribosomal RNA genes have greater sequence similarity to

84 Although Micromonas isolates have high 18S ribosomal RNA gene identity, we found that genomes from

85 on was identified with sequencing of the 16S ribosomal RNA gene in breast milk, areolar skin, and inf

86 o the intergenic spacer (IGS) of the 18S.25S ribosomal RNA genes in potato.

87 Ribosomal RNA genes in sequenced DNA of natural ferns, t

88 lear development the Tetrahymena thermophila ribosomal RNA gene is excised from micronuclear chromoso

89 Regulation of ribosomal RNA genes is a fundamental process that suppor

90 transcriptional initiation of fission yeast ribosomal RNA genes is dependent on the core ribosomal R

91 or allopolyploids, often one parental set of ribosomal RNA genes is transcribed and the other is sile

92 in, we sequenced bacterial 16S small-subunit ribosomal RNA genes isolated from the inner elbow of fiv

93 oughput sequencing after construction of 16S ribosomal RNA gene libraries.

94 ver, we find that transcribed regions of the ribosomal RNA gene loci exhibit rapid exchange of H3/H4

95 lysis, have been developed to detect the 23S ribosomal RNA gene mutations that confer resistance to a

96 a real-time PCR assay for detecting the 16S ribosomal RNA gene of M. tuberculosis.

97 port the pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana

98 We sequenced the 18S ribosomal RNA gene of seven isolates of the enigmatic ma

99 The 16S ribosomal RNA gene of the hyperthermophilic nitrogen fix

100 amine genetic variation in the small subunit ribosomal RNA gene of three bipolar planktonic foraminif

101 Small subunit ribosomal RNA genes of Archaea were amplified from soil

102 ibed spacer (ITS) regions separating nuclear ribosomal RNA genes of Chlorophytes has improved the fid

103 lymerase chain reaction assays targeting 16S ribosomal RNA genes of Gardnerella vaginalis, Lactobacil

104 , we sequenced the mitochondrial 12S and 16S ribosomal RNA genes of males and females from the Arizon

105 Results of this study also showed the two ribosomal RNA genes of the three species had very limite

106 iption factor TFIIIA, which regulates the 5S ribosomal RNA genes of Xenopus laevis.

107 Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG) is a procedure that sorts rRN

108 Archaea, and Eukarya characterized by their ribosomal RNA gene phylogenies and genomic features.

109 Phylogenetic analyses using multiple ribosomal RNA genes place this clade with Rozella, the p

110 ribosomal RNA genes is dependent on the core ribosomal RNA gene promoter and is stimulated by an upst

111 SL1, essential for Pol I recruitment to the ribosomal RNA gene promoter, also has an essential postp

112 ntial for preinitiation complex formation at ribosomal RNA gene promoters in vitro.

113 protein, localizes in nucleoli and binds to ribosomal RNA gene promoters to help repress rRNA genes.

114 Microbiomes were analyzed with 16S ribosomal RNA gene pyrosequencing together with quantita

115 We performed 16S ribosomal RNA gene quantitative polymerase chain reactio

116 accharomyces cerevisiae, the tandem array of ribosomal RNA genes (RDN1) is a target for integration o

117 genetic element that maps within an X-linked ribosomal RNA gene (rDNA) array of D. melanogaster.

118 e probes needed for analyzing populations of ribosomal RNA gene (rDNA) clones by hybridization experi

119 y demonstrated that the core promoter of rat ribosomal RNA gene (rDNA) contains an E-box-like sequenc

120 The 45S and 5S ribosomal RNA gene (rDNA) loci were simultaneously visua

121 omic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequences.

122 community genomic DNA, amplification of 16S ribosomal RNA genes (rDNA) and subsequent examination of

123 The 35S ribosomal RNA genes (rDNA) are organized as repeated arr

124 ly demonstrated that the expression of human ribosomal RNA genes (rDNA) in normal and cancer cells is

125 en the two proteins could explain the shared ribosomal RNA genes (rDNA) phenotypes.

126 enesis requires accelerated transcription of ribosomal RNA genes (rDNAs).

127 new simulation framework for generating 16S ribosomal RNA gene read counts that may be useful in com

128 tructed with phylogenetic markers, including ribosomal RNA gene regions and other highly conserved ge

129 Next-generation sequencing of 16S ribosomal RNA gene regions was used to characterize the

130 Sequencing of 16S ribosomal RNA genes revealed a relative abundance of Bac

131 sponding to active transposons, CRISPR loci, ribosomal RNA genes, rolling circle origins of replicati

132 RNA polymerase I of only one parental set of ribosomal RNA genes (rRNA genes).

133 cox1-3, nad1-6, nad4L, atp6 and cob) and two ribosomal RNA genes (rrnL and rrnS), but the atp8 gene w

134 Further, the hypothesis that ribosomal RNA gene "satellite association" induced by in

135 Ribosomal RNA gene sequence data indicate the presence o

136 The 16S ribosomal RNA gene sequence of an unknown organism was o

137 al phyla were identified only from their 16S ribosomal RNA gene sequence.

138 n and phylogenetic analysis of small-subunit ribosomal RNA gene sequences allow microbes to be identi

139 was to provide a reference collection of 16S ribosomal RNA gene sequences collected from sites across

140 Bacterial 16S ribosomal RNA gene sequences from each sample were ampli

141 Bacterial 16S ribosomal RNA gene sequences from each sample were ampli

142 We examined 13,355 prokaryotic ribosomal RNA gene sequences from multiple colonic mucos

143 ed a network-based analysis of bacterial 16S ribosomal RNA gene sequences from the fecal microbiota o

144 Our analysis of 16S ribosomal RNA gene sequences obtained from 20 distinct s

145 ature analyses of these cloned small subunit ribosomal RNA gene sequences revealed a cluster of Archa

146 xonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed across multi

147 s of polymerase chain reaction-amplified 16S ribosomal RNA gene sequences.

148 th chronic constipation and evaluated by 16S ribosomal RNA gene sequencing (average, 49,186 reads/sam

149 production data together with small subunit ribosomal RNA gene sequencing and biogeochemical data in

150 iota composition was characterized using 16S ribosomal RNA gene sequencing and culture.

151 16S ribosomal RNA gene sequencing characterized the microbio

152 16S ribosomal RNA gene sequencing detected diverse bacterial

153 nciples, study design, and a workflow of 16S ribosomal RNA gene sequencing methodology, primarily for

154 Analysis of 16S ribosomal RNA gene sequencing of cervicovaginal lavage c

155 n of gut microbiota was determined using 16S ribosomal RNA gene sequencing of stool samples.

156 In particular, the 16S ribosomal RNA gene sequencing technique has played an im

157 In this study, we used ribosomal RNA gene sequencing to identify the zooxanthel

158 16S ribosomal RNA gene sequencing was used to characterize t

159 22 healthy children, ages 7-12 years, by 16S ribosomal RNA gene sequencing, with an average of 54,287

160 Samples were analyzed by 16S ribosomal RNA gene sequencing.

161 uated for bacterial composition based on 16S ribosomal RNA gene sequencing.

162 the intestinal microbiota by culture and 16S ribosomal RNA gene sequencing.Among the 3161 enrolled pr

163 Sequencing of the bacterial 16S ribosomal RNA gene showed decreased bacterial diversity

164 ng of the hypervariable V3 region of the 16S ribosomal RNA gene showed members of the families of Lac

165 n of genes encoding known virulence factors, ribosomal RNA gene spacer restriction fragment length po

166 relative abundance of archaeal small subunit ribosomal RNA genes (SSU rDNA) in the subgingival crevic

167 Sequence comparisons of small-subunit ribosomal RNA genes suggest a deep evolutionary divergen

168 iopsy samples were analyzed by bacterial 16S ribosomal RNA gene survey and classified into types usin

169 Here, we use a 16S ribosomal RNA gene survey in a lake that has chemical gr

170 Recently, cultivation-independent ribosomal RNA gene surveys have indicated a potential im

171 In this study, we used pyrosequencing of 16S ribosomal RNA gene tags to compare the composition of th

172 This group accounts for 26% of all ribosomal RNA genes that have been identified in sea wat

173 ng of a variable region of the bacterial 16S ribosomal RNA gene to characterize the bacterial communi

174 DNA and targeted sequencing of bacterial 16S ribosomal RNA genes to gain an understanding of how micr

175 We used transcribed portions of ribosomal RNA genes to identify several transcriptionall

176 Ribosomal RNA gene transcription by RNA polymerase I (Po

177 nscription factor IIIA (TFIIIA) activates 5S ribosomal RNA gene transcription in eukaryotes.

178 Ribosomal RNA gene transcription, co-transcriptional pro

179 lant hybrids is the uniparental silencing of ribosomal RNA gene transcription, or nucleolar dominance

180 omerase IIalpha in RNA polymerase I-directed ribosomal RNA gene transcription, which drives cell grow

181 other fungi, with substantial reductions of ribosomal RNA genes, transporters, transcription factors

182 Genome sequence information that would allow ribosomal RNA gene trees to be related to broader patter

183 ng protocol that produces reads spanning 16S ribosomal RNA gene variable regions 1 and 2 ( approximat

184 The V3-V5 region of the bacterial 16S ribosomal RNA gene was amplified and pyrosequenced, resu

185 Bacterial DNA was isolated, and the 16S ribosomal RNA gene was amplified and sequenced.

186 containing the Xenopus borealis somatic 5 S ribosomal RNA gene was used as a model system to determi

187 The Xenopus borealis somatic 5S ribosomal RNA gene was used as a model system to determi

188 n vivo topological domain size for the human ribosomal RNA genes was estimated between 30,000 and 45,

189 e nucleolar organizer regions (NORs) and the ribosomal RNA genes was examined by Southern analysis an

190 Using amplicon sequencing of the 16S ribosomal RNA gene, we found that when seagrass meadows

191 -cell diversity of the usually conserved 16S ribosomal RNA gene, we suggest that gene conversion occu

192 By sequencing 16S ribosomal RNA genes, we show that a longitudinal selecti

193 taining clusters of transcriptionally active ribosomal RNA genes, we studied the binding of angiogeni

194 ranscribed spacer 2 and the D2 region of 28S ribosomal RNA gene were sequenced and fungi identified.

195 -PCR) analysis and pyrosequencing of the 16S ribosomal RNA gene were used to analyze the diversity of

196 Fragments of 16S ribosomal RNA genes were detected by polymerase chain re

197 equences aligning to Balamuthia mandrillaris ribosomal RNA genes were identified in the CSF by MDS.

198 allo-HSCT at engraftment were analyzed; 16S ribosomal RNA genes were sequenced and analyzed from eac

199 f angiogenin to the intergenic spacer of the ribosomal RNA gene where many of the transcription regul

200 to bind to enhancer regions upstream of the ribosomal RNA genes, which are clustered at NORs.

201 By combining pyrosequencing of 18S ribosomal RNA genes with data on multiple environmental