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1 nvolves the active site and, indirectly, the saddle.
2 orphyrin conformations: planar, ruffled, and saddled.
3 , the porphyrin core is found to be severely saddled.
7 an otherwise normal pattern of dorsal orange saddles and lateral blotches, our results indicate that
8 s ligands with DFT retain the characteristic saddling and ruffling only if the protein matrix is take
9 constant Gaussian curvature (spherical caps, saddles, and cones) or zero mean curvature (Enneper's su
10 hese orthonormal deformations, which include saddling (B2u), ruffling (B1u), doming (A2u), waving (Eg
11 The melting then rapidly accelerates as the saddle between the two domes gets lower, producing nine
14 ocatheter prototype with lithographed double-saddle coils at the distal tip was deflected with real-t
16 grees ), illustrating the flexibility of the saddle conformation and its dependence on the packing.
17 also shows the macrocycle to be in a mainly saddled conformation, but with a significant ruffled com
18 ImH) complex shows the macrocycle to be in a saddled conformation, with the ligands in perpendicular
19 nalized derivatives in crown-crown and crown-saddle conformations, as well as in complexes with water
20 rown conformer of TTPC was observed, a crown-saddle conformer of TAAC was also assigned in aqueous so
22 tions and experiments, we study how the bulk saddle deformations of each hole interact to create defe
23 region known to be sensitive to ruffling and saddling deformations, as well as increased vibrational
24 etween the N-terminal domain and DNA for the saddle diminishes the DNA binding affinity of the full-l
29 dle; these are located in regions with local saddle geometry to minimize the nematic distortions and
31 vature-positive for spheres and negative for saddles-has proven a versatile tool to guide the self-as
35 espectively; P<0.05 versus preischemia), APM-saddle horn distance increased in Control (1.0+/-1.2 mm;
36 ng; P.001), only slightly decreased the PPM-"saddle horn" distance (0.3+/-0.3 mm reduction; P.03), an
37 smaller versus pre-cinching; P.001), and PM-"saddle horn" distances (0.9+/-0.7 and 1.0+/-0.8 mm reduc
38 apillary muscle from the midseptal annulus ("saddle horn") was greater in CIMR(+) animals: 6.5+/-3.2
39 r (PPM) PM tips and the mid-septal annulus ("saddle horn") were calculated from 3-D marker coordinate
40 d posterior PM tips and mid-septal annulus ("saddle horn") were calculated from the 3-dimensional (3D
41 llary muscle tip distances to midseptal MA ("saddle horn"), and distance of each leaflet marker to th
46 data suggest that the predominant process is saddle inversion accompanied by simultaneous rotation of
51 individual hemes and show that ruffling, not saddling, is the dominant factor influencing the frequen
52 ts were within 95-98% of human estimates; at Saddle Island, the model estimated 894 seals compared to
53 TBP does not bind DNA using its TATA-binding saddle, it does photocross-link to a 22-bp sequence that
56 ine-rich domain of BCMA and BAFF-R both have saddle-like architectures, which sit on the horseback-li
59 lometers across, but there is a 10-kilometer saddle-like depression with attributes of a large degrad
62 R out-of-plane vibrational mode gamma(15), a saddling-like mode that is strong in the wild-type enzym
63 thalpy of unfolding approaches zero near the saddle making the unfolding largely invisible to DSC und
66 rges are well-defined mathematical events: a saddle-node and homoclinic bifurcation, respectively.
68 it occurs through a type of bifurcation - a saddle-node bifurcation - that possesses an intrinsic ir
69 ether occur when the system passes through a saddle-node bifurcation as the probe position is varied.
70 slowing down, 2) the scaling laws suggest a saddle-node bifurcation governing slowing down, and 3) t
71 e is a dynamical threshold, resulting from a saddle-node bifurcation mainly determined by IK1 and INC
75 furcation, and the competition model has two saddle-node bifurcations (in which case the system exhib
80 The structure shows the prototypical beta-saddle of LAGLIDADG homing endonucleases that is contrib
82 cated on the top surface and the DNA-binding saddle of the C-terminal domain differs between TBP and
84 is, on the surface opposite the DNA-facing "saddle" of TBP) and onto the side of the first TBP repea
88 Amplicon sequencing of several independent saddle pattern mutants from different genetic background
89 regions of two Clark isolines having similar saddle phenotypes mediated by CHS siRNAs but different g
96 of activation from the initial state to the saddle point in PEL and the following step of relaxation
97 r, it has become increasingly clear that the saddle point of the free-energy surface in most reaction
98 However, the C(s) symmetric second-order saddle point on the B3LYP energy surface is only 0.3 kca
104 conical intersection structures and relevant saddle point structures are presented for the reactions
108 screte eigenstates (e.g. Dyson's disordered, saddle point, and metabolically active toy cell states).
114 plane N-inversion correspond to second-order saddle points (SOSP) on the potential energy surface.
115 -from the ground state, through intermediate saddle points and finally to the configurations of separ
116 y surface (such as multiple minima, valleys, saddle points and ridges) that correspond to characteris
117 tive energetic accessibility of the reaction saddle points and the D0/D1 conical intersection seams.
118 c alveolar flow--characterized by stagnation saddle points associated with alveolar vortices--governs
119 ectronic dispersion whose miniband edges and saddle points can be reached by electrostatic gating.
120 frequencies corresponding to the first-order saddle points corresponding to endo-TS1 and exo-TS1 allo
123 n seam of the two lowest states and reaction saddle points located on the shoulders of this seam.
124 in the atomic displacements and stresses at saddle points of the potential energy landscape, we show
126 are predicted to be second- or higher-order saddle points that lie more than 40 kcal/mol higher than
128 unction has multiple intermediate states and saddle points, and is hence a "rough" free energy landsc
129 the structural resemblances of both types of saddle points, significant differences are found in term
133 appears to reflect a dual origin: a strongly saddled porphyrin skeleton, which alleviates electrostat
135 gh ominous in appearance, most patients with saddle pulmonary embolism are hemodynamically stable and
142 tion, increased height (P<0.001), and deeper saddle shape (ratio of height to intercommissural diamet
143 s increased, a long flat lamina deforms to a saddle shape and/or develops undulations that may lead t
149 l significant nonplanar distortions (i.e., a saddle shape) and remarkably large Stokes-shifted emissi
150 (P<0.0001) indicating flattening of annular saddle shape, redundant leaflet surfaces (P<0.0001), gre
151 The p180C adopts an elongated asymmetric saddle shape, with a three-helix bundle in the middle an
154 MD versus FED display poorer contraction and saddle-shape accentuation in early systole and abnormal
157 ion with early-systolic area contraction and saddle-shape deepening contributing to mitral competency
158 loss of early-systolic area contraction and saddle-shape deepening despite similar magnitude of vent
159 ural diameter ratio, which appraises annular saddle-shape depth) were measured throughout the cardiac
160 P, ZnTTFP, and CuTTFP revealed that a severe saddle-shape distortion was observed with the dithiole r
161 ions the CLEC-2N structure face down in the "saddle"-shaped binding site which lies between the aggre
162 n=12), rigid, complete St Jude Medical rigid saddle-shaped (n=12), Carpentier-Edwards Physio (n=12),
163 ramework structure consists of unprecedented saddle-shaped [Be(12)(OH)(12)](12+) rings connected thro
165 ble band (COS; n=12), St Jude complete rigid saddle-shaped annuloplasty ring (RSA; n=10), Carpentier-
166 , strains increased significantly with rigid saddle-shaped annuloplasty ring, Carpentier-Edwards Phys
169 double belt structures with the same general saddle-shaped conformation of both our previous molecula
172 the individual lipid leaflets have the same saddle-shaped curvature as the hypothetical stalk-interm
173 of FliN from Thermotoga maritima revealed a saddle-shaped dimer formed mainly from beta strands.
174 bridization change in the former case versus saddle-shaped distortion originating from conflicting in
175 tween the domains and are perpendicular to a saddle-shaped DNA binding surface, formed by two four-st
179 ), it has been proposed that D-shaped versus saddle-shaped mitral annulus (MA) segmentation is more b
182 eling analysis which (1) identified a common saddle-shaped nucleophilic region on the surfaces of bot
188 siological three-dimensional shapes, but not saddle-shaped rigid rings or flexible bands, increase AM
192 two active centers that bind pterins, and a saddle-shaped surface that resembles nucleic acid bindin
193 lication and fusion events have produced the saddle-shaped TBP molecule, with its two direct-repeat s
194 l dimerization domain of SIP sits across the saddle-shaped upper surface of Siah1, with two extended
195 nt stimulation, we discovered characteristic saddle-shaped VF* maps that were in excellent agreement
197 TA, which appeared to be different from the "saddle-shaped" mitral annulus, suggesting an annuloplast
198 lipid bilayers is sensitive to kappa(m), the saddle splay (Gaussian curvature) elastic modulus of the
199 edge, this is the first determination of the saddle splay (Gaussian) modulus in a lipid system consis
200 o only marginally stable against spontaneous saddle splay deformation, which is incompatible with lon
201 eory is extended to account for nonvanishing saddle splay modulus within lipid monolayers and perturb
203 for measuring M, the ratio of the Gaussian (saddle splay) elastic modulus to the bending elastic mod
204 ic membranes: defensins selectively generate saddle-splay ("negative Gaussian") membrane curvature in
205 membranes by generating topologically active saddle-splay ("negative Gaussian") membrane curvature th
206 ase higher than that of the L(d) phase and a saddle-splay (Gauss) modulus difference with the Gauss m
209 we show that the requirement for generating saddle-splay curvature implies that a decrease in argini
211 s of the spontaneous twist, we determine the saddle-splay elastic constant for chromonic liquid cryst
212 For toroidal droplets, we find that the saddle-splay energy screens the twisting energy, resulti
213 ene polymers increased the amount of induced saddle-splay membrane curvature and broadened the range
216 f the system, in the vicinity of an unstable saddle steady state that separates the basins of attract
217 bution of a ruffled component in the overall saddled structure compared to all other complexes in thi
218 ationary points-successive minima, joined by saddles-that rise monotonically in energy from basin bot
221 mplex models and big data we anticipate that saddle-transitions will be encountered frequently in the
222 mandibular, full-thickness, alveolar ridge, saddle-type defects following surgical implantation of r
224 ntly encounter an additional non-bifurcative saddle-type mechanism leading to critical transitions.
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