ライフサイエンスコーパス: script

1 new ones easily added via a provided Python script.

2 ng in a graphical user interface and a batch script.

3 ndrick mass defect plots and a "nontarget" R script.

4 utational string search with a custom Python script.

5 nded, personalized, and structured interview script.

6 models to analyze the structure of the Indus script.

7 tial dependencies between signs in the Indus script.

8 ng nodes and illustrate its use with example scripts.

9 nome database, web front end, API and server scripts.

10 d in hearing individuals reading sound-based scripts.

11 out by bioinformatics experts, using one-off scripts.

12 which can now be accessed via dedicated Perl scripts.

13 goDB, HTML/Javascript and various bash shell scripts.

14 gration of JABAWS services into conventional scripts.

15 xisting databases using internally developed scripts.

16 probe intensities using customized fluidics scripts.

17 de, example files, a brief manual and helper scripts.

18 We introduce here our community metrics as R scripts.

19 are difficult to streamline or integrate in scripts.

20 tware, implemented in Java with supporting R scripts.

21 view information can be queried using SPARQL scripts.

22 allowing integration with other programs or scripts.

23 d available as a set of easily implemented R scripts.

24 iPython and (ii) script-based, using Python scripting.

25 We argue that a change in script across primes and targets provides optimal condit

26 all interfering RNA-mediated knockdown of DC-SCRIPT affected the cytokine response upon TLR stimulati

27 that besides nuclear receptor regulation, DC-SCRIPT also modulates activation of NF-kappaBp65 after T

28 oding dendritic cell-specific transcript (DC-SCRIPT; also known as ZNF366).

29 e interface allows for easy integration into scripted analyses, and is able to handle large datasets

30 pite a structured interprofessional rounding script and a well-established electronic health record,

31 Code, R script and documentation are available under the Artisti

32 Coexpression of DC-SCRIPT and GR is shown in human monocyte-derived DCs, an

33 An RVS R script and instructions can be found at strug.research.s

34 FunGAP is written in Python script and is available in GitHub.

35 ry evaluated performance with a standardized script and mobile touch-screen data collection.

36 rovides an intermediate level between simple scripting and complete workflow management tools.

37 An automated protocol, available for scripting and driving the graphical user interface (GUI)

38 ipes and perform packing experiments through scripting and graphical user interfaces at http://cellPA

39 GeIST uses a combination of Bash shell scripting and Perl.

40 ides a command-line interface for users with scripting and programming needs to incorporate or extend

41 atistics, pipeline-compatible automation via scripting and the ability to completely customize and/or

42 for the main program as well as various Perl scripts and a fully documented Perl API to facilitate po

43 ublic use; the package includes installation scripts and a set of helper tools.

44 We also added scripts and a step-by-step tutorial for visualizing each

45 rface, an API for direct data access by Ruby scripts and access to feature data stored in BAM files.

46 evelopers to quickly write VBS data analysis scripts and is a unique resource among tools for VBS.

47 calls are available at http://bit.ly/1g8XqRt scripts and miscellaneous data at https://github.com/lh3

48 TURNIP comprises a suite of Perl scripts and modules that facilitates the resolution of m

49 little modification to existing sequential R scripts and no expertise in parallel computing.

50 d hoc and requires the development of custom scripts and pipelines, making it problematic for biomedi

51 including wrappers for bash data management scripts and PLINK-1.9 to minimize computational time.

52 Software tools, scripts and result data are available at http://faculty.

53 Supplementary files, scripts and sample data are available at http://tools.ca

54 Files, scripts and supplementary data are available from http:/

55 Scripts and Supplementary Material can be found at http:

56 CAESAR scripts and test data can be downloaded from http://visi

57 ious open source software packages, in-house scripts, and Docker containers to analyze and process si

58 various formats, including PyMOL and RasMol scripts, and Position-Specific Scoring Matrices (or amin

59 We have stored the software, scripts, and processed data in a publicly accessible rep

60 cking data using LSRanalyze or custom MATLAB scripts; and implementation of validation controls.

61 each lesion to be treated using the Eclipse Scripting Application Programming Interface, (b) determi

62 The TAP-k web server and downloadable Perl script are freely available at http://www.ncbi.nlm.nih.g

63 R scripts are at http://www.soph.uab.edu/Statgenetics/Peop

64 All data as well as our evaluation scripts are available at http://msbi.ipb-halle.de/msbi/c

65 , documentation, example diagrams and Groovy scripts are available at http://PathVisio.org/wiki/PathV

66 R scripts are available at http://publichealth.lsuhsc.edu/

67 Source code and accompanying Python scripts are available at http://shendurelab.github.io/MI

68 ource code, documentation and initialization scripts are available at http://simbioms.org.

69 The Perl and R scripts are available at http://www.framinghamheartstudy

70 Algorithm scripts are available at the Gardner Lab website.

71 The database, models and associated scripts are available for download from the ftp site.

72 Open source (GNU Public License) PERL scripts are available for download from the New York Bot

73 Source code, compiled code and R and Python scripts are available from http://thebrain.bwh.harvard.e

74 trol files, documentation and accessory Perl scripts are available from the website.

75 The MALTAB and Python scripts are available in the Supplementary Material.

76 The R scripts are available on demand from the authors.

77 mentation, user manual, example datasets and scripts are available online at http://code.google.com/p

78 Perl and HYPHY scripts are available upon request from the authors.

79 Availability: The TandTRAQ Perl scripts are freely available for download at http://www.

80 Although Perl scripts are perfectly suited for processing large volume

81 The R scripts are provided in File 3 in Supplementary Material

82 Custom-made scripts are provided, as well as sample datasets to perm

83 Server-side scripts are written in PHP and leverage R and a MySQL da

84 a single and fast approach using a filtering script as a means of prioritizing sample processing of d

85 ve identified the DC-specific transcript (DC-SCRIPT) as an NR coregulator, suppressing type I steroid

86 Genre scripts, as defined in the target article, leave higher-

87 The tool includes an automated and simple "scripting at the click of a button" functionality that e

88 An in-house developed script automatically processed large data files to gener

89 Execution of the script automatically yields the sequence of the final mo

90 PyRosetta scripts available at www.bioinfo.rpi.edu/bystrc/download

91 s: (i) interactively, using iPython and (ii) script-based, using Python scripting.

92 erogeneous clones of HSC with epigenetically scripted behaviors.

93 The use of a standardized script by novice instructors to facilitate team debriefi

94 The MetaMapp scripts can be accessed at http://metamapp.fiehnlab.ucda

95 e is implemented in PERL, and the associated scripts can be downloaded from github.com, and online do

96 put files, analysis parameters, and executed scripts can be downloaded, EzArray provides maximum repr

97 A suite of test scripts can now be used to learn the core functionality

98 A customized script, coded in Matlab, was used to manually segment an

99 We demonstrate that DC-SCRIPT coexists with GR in protein complexes and functio

100 nsistency (primed vs unprimed), and quality (script concordance) were assessed.

101 nsistency (primed vs unprimed), and quality (script concordance) were assessed.

102 < 0.001), and decision quality was superior (script concordance: attendings = 90%, residents = 78.3%,

103 < 0.001), and decision quality was superior (script concordance: attendings = 90%, residents = 78.3%,

104 eractions between diagnostic group, sex, and script condition were observed in multiple brain regions

105 Scripts created for the experimentation are available at

106 Resuscitation Education Using Simulation and Scripted Debriefing (EXPRESS) network simulation program

107 Scripted debriefing showed greater improvement in knowle

108 in common languages, such as R; (iii) select script-defined calculation options through a graphical u

109 The R scripts demonstrate how calls to existing R packages for

110 A tutorial, user's manual and sample scripts demonstrating usage are also available on the we

111 ships between DWTPs and WWTPs, with a python script designed to perform a network analysis by hydrolo

112 edure is implemented as CotQuest, a suite of scripts designed for use with the statistics package SAS

113 MADS+ scripts, documentations and annotation files are availab

114 We used a script-driven imagery task consisting of narratives of b

115 ipants were engaging in brief individualized script-driven imagery trials of stress, alcohol cues, an

116 pproximating a time when we see the earliest scripts elsewhere in Mesoamerica.

117 The hypothesis that the script encodes language has recently been questioned.

118 qPigscripts use the Hadoop-based distributed scripting engine Apache Pig, which automatically paralle

119 ogether, our results indicate that the Indus script exhibits rich synactic structure and the ability

120 s pipeline integrates a hybrid of customized scripting, existing utilities and machine learning in or

121 learn, and sometimes requires programming or scripting experience from its users.

122 expertise in these software and command line scripting experience on Unix platforms, besides possessi

123 strate IL-4 to be the dominant factor for DC-SCRIPT expression in human monocyte-derived DCs.

124 Matlab script files are available from the author.

125 iscussion was stimulated by a semistructured script focused on their perceived barriers to eye care a

126 The script for automated integration is fast and adaptable t

127 We provide an R script for graphical visualization and statistical analy

128 uality gold standard data set, and a scoring script for mutation extraction systems have been made pu

129 The script for QCS calculation is available at http://prodat

130 ily reused for other data and a small driver script for reproducing all results presented here.

131 A new script for the recognition of halogenated compounds base

132 The script for TR calculation is included in Supplementary M

133 asily counted manually or using an automated script for user-independent assay readout.

134 experience, (2) a command line interface for scripting for a scientist with some programming experien

135 ftware suite is a collection of Perl and PHP scripts for designing, annotating and visualizing genome

136 ful for disease outbreak investigations, and scripts for downloading and parsing data from NCBI BioSa

137 Scripts for installation and configuration on Linux are

138 freely available and encompasses stand-alone scripts for isolated application and evaluation as well

139 Polysolver or HLAminer combined with custom scripts for mutant peptide identification and NetMHCpan

140 The scripts for performing evaluations are available upon re

141 s used to assess responses to individualized scripts for stress, drug/alcohol cue and neutral-relaxin

142 Creating re-usable scripts for the SGE is a common challenge.

143 ow to interact with SeqDepot and Perl/Python scripts for use with local processing pipelines.

144 Most modules in RSeQC take advantage of R scripts for visualization, and they are notably efficien

145 Software code (programs and scripts) for processing the Populus ChIP-seq data are pr

146 The software is a command line perl script freely available as open source.

147 nt by MZmine 2 followed by a homemade Python script freely available to the community that clears the

148 searchers with powerful batch-processing and scripting functionality, and an extensible platform with

149 ed health advisers who followed standardised scripts generated by interactive software.

150 ant difference at baseline in nonscripted vs scripted groups for MCQ (P = .87), BAT (P = .99), and CP

151 plement our algorithm in a suite of software scripts (Haploscribe).

152 indicate little plasticity of epigenetically scripted hematopoietic stem/progenitors.

153 The perl script implementing the described method is called EDUT

154 A uniform data analysis script implementing the protocol was executed by each of

155 R-scripts implementing EVORA are available from CRAN (www.

156 Programs and scripts implementing the methods described in this manus

157 expression, suggesting a primary role for DC-SCRIPT in the regulation of IL-10 production.

158 were analyzed using SAMTOOLS and custom Perl scripts in conjunction with BLAST searches and available

159 Implementation of debriefing scripts in resuscitation courses may help to improve lea

160 some Indo-European languages and alphabetic scripts in scientific literature.

161 ng-Embracing model reserves a role for genre scripts in the hedonic valuation of negative emotion in

162 mind in the eyes, olfactory identification, scripted interaction), and safety and tolerability in a

163 METAL provides a rich scripting interface and implements efficient memory mana

164 The MR-Tandem Python script is Apache licensed and available as part of the I

165 The complete ready-to-run script is available as supplemental material.

166 Availability and Implementation: A GPL PERL script is available for download.

167 The proposed script is based on the recognition of a generic halogena

168 An R script is freely available for download at http://www2.i

169 The Perl script is freely available from ftp://ftp.sanger.ac.uk/p

170 ntrolling GR function and GILZ expression DC-SCRIPT is potentially involved in the balance between to

171 DC-specific transcript (DC-SCRIPT) is a protein expressed by DCs and has been demon

172 the package, including MySQL schema creation scripts, is available at ftp://cggc.agtec.uga.edu/Oxford

173 Silencing of IL-10 in DC-SCRIPT knockdown DCs rescued IL-12 expression, suggestin

174 Moreover, DC-SCRIPT knockdown DCs showed enhanced phosphorylation, ac

175 ecreased TLR-mediated IL-10 production in DC-SCRIPT knockdown DCs.

176 shown in human monocyte-derived DCs, and DC-SCRIPT knockdown enhances GR-dependent upregulation of G

177 ole in TLR-induced IL-10 production after DC-SCRIPT knockdown.

178 The use of a simple scripting language and an object-oriented scheme facilit

179 pabilities at the cost of learning a complex scripting language which is used to specify these models

180 f image recognition tools provided by Sikuli scripting language, while handling of their physical cou

181 va viewer for 3D structures, with a powerful scripting language.

182 hical user interface (GUI), using the Python scripting language.

183 statistical analysis, is often performed in scripting languages like R, Perl, and Python.

184 le pathway analysis directly within the same scripting languages used for primary data analyses.

185 mplemented in C++, is easily executed within scripting languages used in the bioinformatics community

186 alysis tool PathVisio available from various scripting languages will benefit researchers.

187 ork allows everything from image formats, to scripting languages, to visualization to be extended by

188 y usage requiring special consideration from scripting languages.

189 We argue that, in film genre scripts, lower-level stylistic features lend access to m

190 nd other sites in West Asia reveals that the script may have been used to express different content i

191 Database files and scripts maybe downloaded from http://seqdepot.net/downlo

192 A second script measured the average RNFL thickness along the pap

193 The tool additionally provides a flexible scripting mechanism to handle complex queries.

194 lp features and is ideal for beginners while script-mode is best suited for algorithm development.

195 DC-SCRIPT mRNA expression in the immune system was confined

196 of DCs with TLR ligands further increased DC-SCRIPT mRNA expression, suggesting a role in DC maturati

197 Zip file with all peptide feature files and scripts needed to generate the tables and figures in thi

198 a stand-alone computer program that reads a script of commands to represent complex macromolecules,

199 osts, all the while following the life cycle script of plant-associated bacteria.

200 The library generates a script of TeX macro commands for the vector graphics lan

201 The script of the ancient Indus civilization remains undecip

202 In the meantime, the scripts of the methods are available on request from the

203 In this study, we analyzed the effect of DC-SCRIPT on GR activity.

204 d, requiring manual data handling and custom scripting on a case-by-case basis.

205 Cloud (EC2) nodes and store private data and scripts on Amazon's Simple Storage Service (S3) with use

206 arty software packages and sometimes further scripting or computer programming.

207 who wish to efficiently adapt their existing scripts or pipelines.

208 t or statistical software without additional scripts or proprietary components.

209 MutationFinder can be used as a stand-alone script, or imported by other applications.

210 and then analyzed according to a package of scripts (OSA) that reorients the SPECT brain volume to t

211 Most scripts performed by patients with progressive supranucl

212 The model, provided as an annotated Matlab script, predicts the Veff as a function of physical-chem

213 up facilitator used open-ended questions and scripted probes from a written guide.

214 criptional network underlying this carefully scripted process is not well understood.

215 en the user-friendly software needed and the scripting/programming infrastructure often employed for

216 ge, we show for the first time endogenous DC-SCRIPT protein expression in human DCs both in vitro and

217 DC-SCRIPT protein is detected early upon differentiation of

218 and monitors web services according to test scripts provided by the their administrators.

219 A cloning strategy expressed as a pydna script provides a description that is complete, unambigu

220 s (i.e. template matching fingerprinting and scripting) providing highly informative chemical signatu

221 nalysis procedures and full automation using scripts, QSoas features a very powerful data fitting int

222 The script remains undeciphered, despite a large number of a

223 ypes and the genomic region of interest, the script retrieves all corresponding single nucleotide pol

224 he linguistic hypothesis by showing that the script's conditional entropy is closer to those of natur

225 A custom script segmented the RNFL; the fovea and optic nerve cen

226 pport measures or usual support measures and scripted serial telephone calls (16 calls during 96 week

227 This demonstrates that DC-SCRIPT serves an important role in regulating GR functio

228 ly, 'micrographia' and 'lack of decrement in script size' are also more common in progressive supranu

229 smaller than 50% of the control group's mean script size, was present in 75% of patients with progres

230 anuclear palsy did not exhibit decrements in script size.

231 The software (scripts, source code and binaries) is copyrighted but fr

232 contrast, in languages with nonalphabetical scripts, such as Mandarin Chinese, individual speech sou

233 physicians.DESIGN, SETTING, AND PARTICIPANTS Scripted telephone calls were placed to every dermatolog

234 hic and socioeconomic data were obtained via scripted telephone questionnaires.

235 y a physician assistant and assessed using a scripted template.

236 We also describe a MATLAB script that automates the data analysis.

237 de a freely available and open source python script that can be used to analyze raw read data or read

238 First, we developed a custom script that can detect intergenic regions of the S. pyog

239 rson with the use of a standardized clinical script that differed by insurance status.

240 odified X!Tandem C++ executable and a Python script that drives Hadoop clusters including Amazon Web

241 odified X!Tandem C++ executable and a Python script that drives Hadoop clusters including Amazon Web

242 t using ANSI terminal color; SScolor, a Perl script that generates static HTML pages; and Raton, an A

243 ave uncovered about 3,800 short samples of a script that was used throughout the civilization.

244 e report the development of a set of R-based scripts that allow for pre- and postprocessing of raw LC

245 PyMOL and Chimera scripts that colorize reactive groups on residues that a

246 hers to quickly develop simple, yet powerful scripts that enable complex genomic analyses.

247 ts across a cohort is often done with ad hoc scripts that must be re-written for every new project.

248 OP provides an increasing number of built-in scripts that perform simulations ranging from implementa

249 ently reviewed and analyzed by custom MATLAB scripts that segment single-cell contours and extract qu

250 emi-automated methods, including Linux-based scripts, that simplified the process while minimizing th

251 gulatory points and discussing how they help script the fate of pluripotent stem cells.

252 Third, the nestagg script to aggregate results of the individual runs into

253 be downloaded by the user together with an R-script to compute the enrichment of SNPs/variants in sel

254 BayesTraits by M. Pagel and A. Meade, and a script to configure and repeatedly launch it by D. Barke

255 An R script to find the time point with the minimal temporal

256 A bash shell script to perform the sequential trimming and mapping pr

257 A bash shell script to perform the sequential trimming and mapping pr

258 g triggered by contact closure relays, and a script to retrieve the data.

259 Second, the nestrun script to run a given command using each set of paramete

260 to address this issue by using a debriefing script to standardize debriefings.

261 d to handle large datasets, includes related scripts to facilitate high-throughput phylogenomic analy

262 Supplementary material and MATLAB scripts to implement the methods described in this artic

263 ss, scientists must write frequently complex scripts to perform these tasks.

264 In addition, the workflow uses Beanshell scripts to reconcile mismatches of data between services

265 Our pipeline uses custom scripts together with external assembly, mapping and var

266 Pymol scripts together with PDB files allow movies of individu

267 oped and validated the semi-automatic MATLAB script TracMouse for unbiased detection of video-recorde

268 The time course of cross-script translation priming and repetition priming was ex

269 All training data, test data, and scripts used are available from the SpiderP website.

270 The extracted resource data, the scripts used for network generation and the resulting ne

271 All the data and scripts used in the work are available at http://dlab.cl

272 All data and scripts used in this correction have been made available

273 and prediction scores for test-cases, and R scripts used in this work are provided as part of the Su

274 documentation, tutorial material and all the scripts used to generate the data described in this pape

275 g threshold capillary pressure field and the scripts used to generate them are provided, but the appr

276 An example of MATLAB scripts used to implement the methods described in this

277 Scripts used to perform our analysis are available at ht

278 ization metaphor: Colorstock, a command-line script using ANSI terminal color; SScolor, a Perl script

279 tition priming was examined in two different scripts using a combination of the masked priming paradi

280 ented in the PHP Symfony2 framework with TCL scripts using the CACTVS toolkit.

281 PRTPrimer is available in two forms: a Perl script (version 5.14 and higher) that can be run from th

282 Four scripted videos of a bad news conversation were created

283 Epock C++ source code, Python analysis scripts, VMD Tcl plugin, documentation and installation

284 e randomized to 1 of 4 arms: permutations of scripted vs nonscripted debriefing and high-realism vs l

285 Once developed, the script was applied to the identification of organohaloge

286 The script was used to search for select novel polyfluorinat

287 Programs/scripts we developed/used in the study are available at

288 Uniform statistical analysis scripts were run locally.

289 to attain competency in reading orthographic scripts which encode the sound properties of spoken lang

290 e as well as all the custom-written computer scripts, which can be modified according to specific exp

291 ular interactions typically requires writing scripts, which impacts the non-specialist accessibility

292 bs to customize their Luminex analyses using scripting while still presenting users with a single, gr

293 A Perl script with e-Driver and the files to reproduce the resu

294 for running analyses and sharing data and R scripts with others.

295 peaks were rapidly assigned by use of a Perl script, with a mass-matching tolerance of 200 ppm.

296 We present eLAMP, a PERL script, with Tk graphical interface, that electronically

297 grated as remotely executed tasks in locally scripted workflows.

298 ocessing, curve fits, and algorithms through scripts written in common languages, such as R; (iii) se

299 of quantitative data by combining the use of scripts written in the R programming language with tools

300 Scripts, written in Perl and R, for simulating short rea