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1 a GRN model for embryonic development in the sea urchin.
2 ms including the mouse, frog, zebrafish, and sea urchin.
3 ggesting cdk2 involvement in this process in sea urchin.
4 whose fertilization occurs externally, like sea urchins.
5 e stable state by increasing diet breadth in sea urchins.
6 columnals, changed in step with diversity of sea urchins.
7 focussing on abundant macroalgae and grazing sea urchins.
8 temporal regulation of PLCgamma and SFK1 in sea urchins.
9 nfect marine animals such as farmed fish and sea urchins.
10 the GRN for the same embryonic territory of sea urchins.
11 fertilization and reproductive isolation of sea urchins.
16 we found in the responses of Padina spp. and sea urchin abundance at several vent systems increases c
18 e performed a structure-function analysis of sea urchin Alx1 using a rescue assay and identified a no
20 complete ancestral TPC gene family from the sea urchin and demonstrate that all three isoforms local
21 rison of the regulation of foxa orthologs in sea urchin and in Caenorhabditis elegans shows that foxa
23 rom one to three days after fertilization of sea urchin and sea star (total of 22,670,000 reads).
24 that 47 and 38 known miRNAs are expressed in sea urchin and sea star, respectively, during early deve
26 Although invagination of the archenteron in sea urchins and dorsal closure in Drosophila are known t
28 ryos of the echinoderms, especially those of sea urchins and sea stars, have been studied as model or
29 ritories have evolved different functions in sea urchins and sea stars, this subcircuit is part of an
30 lain some of the distinctions between modern sea urchins and the much more disparate groups of forms
31 echinoderms, Strongylocentrotus purpuratus (sea urchin) and Patiria miniata (sea star) are excellent
33 ns in the digestive tracts of the mouse, the sea urchin, and the nematode and in the chordate notocho
34 in embryos of Strongylocentrotus purpuratus sea urchins, and observe a sequence of three mineral pha
35 ing plate addition pattern characteristic of sea urchins, and that application of the Bertalanffy gro
36 provide strong support for the idea that the sea urchin ANE regulatory state and the mechanisms that
37 , we show that during early development, the sea urchin ANE territory separates into inner and outer
43 re synthesized with both the nanorod and the sea-urchin-arm dimensions controlled by Co/Fe ratios.
45 y trophic replacement of herbivorous fish by sea urchins at low biomass and the accumulation of slow-
46 other deuterostomes, including ascidians and sea urchins, but no nodal orthologue has been reported i
49 ological inhibition of the Arp2/3 complex in sea urchin coelomocytes, cells that possess an unusually
52 binding motifs is significantly depressed in sea urchins compared with sea star, but both motif types
55 d tropical systems the abundances of grazing sea urchins declined dramatically along CO2 gradients.
56 ggers a trophic cascade leading to increased sea urchin densities and decreased macroalgal biomass.
57 ll treatments to examine the extent to which sea urchin density and macroalgal biomass were related t
59 tionships between: (1) lobster abundance and sea urchin density, and (2) sea urchin density and macro
63 sive work over the last decades in echinoid (sea urchins) echinoderms has led to the characterization
65 nist potency for release of Ca(2+)-ions from sea urchin egg homogenates and in potency for competitio
66 zido-NAADP was shown to release calcium from sea urchin egg homogenates at low concentration and to c
68 itors for ex vivo and in vitro treatments of sea urchin eggs and isolated cortices and cortical vesic
69 in a systematic manner, we place individual sea urchin eggs into microfabricated chambers of defined
71 ing NAADP-evoked Ca(2+) signaling, including sea urchin eggs, human cell lines (HEK293, SKBR3), and m
73 y in the primordial germ cells (PGCs) of the sea urchin embryo (Strongylocentrotus purpuratus) is qui
74 pability occurs at early gastrulation in the sea urchin embryo and requires activation of early speci
75 amental discoveries that originated with the sea urchin embryo as an experimental system are used to
79 rior neuroectoderm (ANE) of the deuterostome sea urchin embryo expresses many of the same transcripti
81 strulation the ectodermal territories of the sea urchin embryo have developed an unexpectedly complex
83 d interference to demonstrate that the early sea urchin embryo integrates information not only from W
85 rmation of the calcified endoskeleton of the sea urchin embryo is a valuable experimental system for
87 age labelling studies have shown that in the sea urchin embryo model system, descendants of the veg1
89 urrent gene regulatory network (GRN) for the sea urchin embryo pertains to pregastrular specification
90 ll micromeres to the coelomic pouches in the sea urchin embryo provides an exceptional model for unde
93 it activated early in the development of the sea urchin embryo reveal a sequence of encoded "fail-saf
94 idal ciliated band (CB) of the postgastrular sea urchin embryo surrounds the oral ectoderm, separatin
95 hese data strongly support the idea that the sea urchin embryo uses an ancient anterior patterning sy
96 ion process in the vegetal half of the early sea urchin embryo using Boolean models with continuous-t
97 terized gene regulatory network (GRN) in the sea urchin embryo was used to identify the transcription
98 is afforded by the oral ectoderm GRN of the sea urchin embryo where cis-regulatory evidence, experim
99 we describe a general methodology using the sea urchin embryo, a material of choice because of the l
101 diator of oral ectoderm specification in the sea urchin embryo, and indirectly, of aboral ectoderm sp
102 fully applied to regulatory processes in the sea urchin embryo, but it is generally applicable to any
104 The well-known regulative properties of the sea urchin embryo, coupled with the recent elucidation o
105 are formed at the fifth cell division of the sea urchin embryo, illustrate many typical features of p
112 ry networks (GRNs) that control pregastrular sea urchin embryogenesis to reveal the gene regulatory f
116 ABC transporter activity during formation of sea urchin embryonic cells necessary for the production
120 irectly to the CUB (Complement 1r/s, Uegf [a sea urchin embryonic protein] and BMP1) domains of BMP1
122 aggregated late blastula- and gastrula-stage sea urchin embryos according to the regulatory states ex
123 AV) and secondary (oral-aboral) (OA) axes of sea urchin embryos are established by distinct regulator
127 overy that some of the pharyngeal neurons of sea urchin embryos develop de novo from the endoderm.
128 d dorsal-ventral (DV) axes, respectively, of sea urchin embryos during cleavage and early blastula st
129 the result of early specification processes, sea urchin embryos eventually form various mesodermal ce
132 onstrates that pantropic retroviruses infect sea urchin embryos with high efficiency and genomically
133 opic retroviruses as a transduction tool for sea urchin embryos, and demonstrates that pantropic retr
135 PS NPs in several human cell lines, also in sea urchin embryos, differences in surface charges and a
140 , whole-mount fruit fly embryos, whole-mount sea urchin embryos, whole-mount zebrafish larvae, whole-
147 an essential node of the well-characterized sea urchin endomesoderm gene regulatory network (GRN).
149 Another seven T and two complement C1r/C1s, sea urchin epidermal growth factor, and bone morphogenet
150 effects of OA on the skeleton of "classical" sea urchins (euechinoids), but the impact of etching on
151 t showed that the embryos of the New Zealand sea urchin (Evechinus chloroticus) are the most sensitiv
152 rosophila embryo and the endomesoderm in the sea urchin, even though the respective subcircuits are c
156 boratory observations indicate that cidaroid sea urchins feed on live stalked crinoids, leaving disti
157 ryo-electron tomography of Chlamydomonas and sea urchin flagella to answer long-standing questions an
159 es to primary mesenchyme cells (PMCs) during sea urchin gastrulation, although the relative contribut
163 eralization of embryonic spicules and of the sea urchin genome have identified several putative miner
164 ion of the regulatory genes predicted by the sea urchin genome project and shown in ancillary studies
165 cithotrophic (nonfeeding) development in the sea urchin genus Heliocidaris is one of the most compreh
167 ndance and biomass among lobster (predator), sea urchins (grazer), and macroalgae (primary producer)
169 r signs of biological disturbance (primarily sea urchin grazing) and increased recovery rates of the
172 In temperate reefs, the grazing activity of sea urchins has been responsible for the destruction of
173 ating in the early development of euechinoid sea urchins have revealed that little appreciable change
175 sons of functional and expression studies in sea urchin, hemichordate and chordate embryos reveal str
176 ion of different shaped (spherical, rod, and sea-urchin) heteroatom-doped fluorescent carbon nanopart
177 d echinoderms Paracentrotus lividus Lamarck (sea urchin), Holothuria forskali Chiaje (sea cucumber),
179 over, current flagellar model systems (e.g., sea urchin, human sperm) contain accessory structures th
180 strate that the binding of PIP(2) to SpIH, a sea urchin hyperpolarization-activated cyclic nucleotide
183 hese seedlings were preferred by herbivorous sea urchins in feeding trials, which could potentially c
184 s for the genes and messages from individual sea urchins indicates that these two sequence sets have
189 the development of the embryonic skeleton in sea urchins is an important model for understanding the
190 We investigated the manner in which the sea urchin larva takes up calcium from its body cavity i
191 iously uncharacterized putative orthologs in sea urchin larvae and detected expression for twelve out
194 city by regulating arm length in pre-feeding sea urchin larvae in response to food availability.
196 nexpected findings from the immune system of sea urchin larvae potentially provide insights into immu
198 d biogenic (extracted from California purple sea urchin larval spicules, Strongylocentrotus purpuratu
200 om the polyhedral Co-Fe-O nanoparticles) and sea-urchin-like Co-Fe-P (from the cubic Co-Fe-O nanopart
206 terminus (found in basal species such as the sea urchin) mediates direct catalytic activation of NADK
207 briefly compare the observed dynamics in the sea urchin model to a version that applies to the fly em
216 s a macroevolutionary response to changes in sea urchin predation pressure and that it may have set t
218 uenced herbivore feeding behavior, yet while sea urchins preferred nutrient-enriched seagrass tissue
220 AG1 proteins, Transib transposase and purple sea urchin RAG1-like, have a latent ability to initiate
221 otinic acid 5-position are recognized by the sea urchin receptor, albeit with a 20-500-fold loss in a
226 Mesozoic diversity changes in the predatory sea urchins show a positive correlation with diversity o
227 ent studies in naked mole rat and long-lived sea urchins showed that these species do not alter their
229 of skeletal development, the newly expanded sea urchin skeletogenic GRN will provide a foundation fo
230 y transcription factors that function in the sea urchin skeletogenic mesoderm are co-expressed in the
232 Mg2+ content and protective function of the sea urchin skeleton will play out in a complex way as gl
235 us purpuratus and Lytechinus variegatus, two sea urchin species whose ancestors diverged approximatel
236 all available bindin sequences for two other sea urchin species, S. pallidus and S. droebachiensis.
237 self-inactivation strategy to both insert a sea urchin-specific enhancer and disrupt the endogenous
239 uctural arrangements of Ribbon proteins from sea urchin sperm flagella, using quantitative immunobioc
240 oscopy and optochemical techniques, we track sea urchin sperm navigating in 3D chemoattractant gradie
242 ent observations of flagellar counterbend in sea urchin sperm show that the mechanical induction of c
248 e precursors to calcite (CaCO3) formation in sea urchin spicules, and not proto-aragonite or poorly c
249 most abundant occluded matrix protein in the sea urchin spicules, SM50, stabilizes ACC . H(2)O in vit
250 present a comprehensive analysis of an adult sea urchin spine, and in revealing a complex, hierarchic
251 OA on fertilization success in the Antarctic sea urchin Sterechinus neumayeri using pH treatment cond
253 and antioxidant activity of gonads from the sea urchin, Stomopneustes variolaris, inhabiting the coa
254 , including two exons and one intron, in the sea urchin Strongylocentrotus intermedius represented by
256 changed with the discovery of a gene in the sea urchin Strongylocentrotus purpuratus (phylum Echinod
257 os homologs are present in the genome of the sea urchin Strongylocentrotus purpuratus (Sp), and each
260 l cells missing (gcm) regulatory gene of the sea urchin Strongylocentrotus purpuratus is first expres
261 ible for skeletogenesis in the embryo of the sea urchin Strongylocentrotus purpuratus is restricted t
262 apacity of the ecologically important purple sea urchin Strongylocentrotus purpuratus to adapt to OA,
263 ch contrasts with previous findings from the sea urchin Strongylocentrotus purpuratus where L-type an
265 os homologs are present in the genome of the sea urchin Strongylocentrotus purpuratus, all of which a
270 axis orientations in the tooth of the purple sea urchin ( Strongylocentrotus purpuratus ), using high
273 patterns of genome-wide selection in purple sea urchins (Strongylocentrotus purpuratus) cultured und
275 The Sp185/333 gene family in the purple sea urchin, Strongylocentrotus purpuratus, consists of a
277 ork during early embryogenesis of the purple sea urchin, Strongylocentrotus purpuratus, is well descr
279 extant, morphologically distinct, echinoid (sea urchin) subclasses, Euechinoidea and Cidaroidea, whi
280 h research on indirect-developing euechinoid sea urchins suggests strong conservation of GRN circuitr
288 The Nkx5/HMX family is highly conserved from sea urchins to humans, with known roles in neuronal and
290 posed a genetically homogenous population of sea urchins to two very different trophic environments o
291 NAADP have molecular masses smaller than the sea urchin TPCs, and antibodies to TPCs do not detect an
292 l mineralogy, thickness, and strength in the sea urchin Tripneustes gratilla reared in all combinatio
295 primary sequences of drug binding domains of sea urchin versus murine ABCB1 by mutation of Sp-ABCB1a
298 lsulfatase insulator (ArsI) derived from the sea urchin, which has conserved insulator activity throu
299 ce and predation rate of P. helianthoides on sea urchins will likely decrease with future warming.
300 ncluding Drosophila, Caenorhabditis elegans, sea urchin, Xenopus, chick, and mouse has begun to illum
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