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1 sults from X?Tandem, an open-source proteome search engine.
2 ainst the NCBInr database using the ProFound search engine.
3 hrough a standard web browser using a simple search engine.
4 mary search engine and EMBASE as a secondary search engine.
5 e been significant improvements to the Genew search engine.
6 ed query capability provided by the LION SRS search engine.
7 ware is written in C ++ and uses OR-Tools CP search engine.
8 abstract of the manuscripts using the PubMed search engine.
9  still lacks a fast and interactive all-atom search engine.
10 r peptide matching using Apache Lucene-based search engine.
11 nd submitted for peptide identification to a search engine.
12 content of figures and used it in our figure search engine.
13 rom nearly 200,000 distinct hosts, excluding search engines.
14 gy screening performed by sequence alignment search engines.
15 cost a lot of computational time of database search engines.
16 structure of the Web and for building better search engines.
17 ere collected from medical and nonscientific search engines.
18 lly in a format that is inaccessible to text search engines.
19                                          The search engine achieves significant improvements in query
20 tation of movements (e.g., [1-3]), just like search engines affect memory [4].
21                                 A text-based search engine allows efficient searching of compounds ba
22                                          The search engine allows one to search over SWISS-PROT and G
23              We present an update of the EBI Search engine, an easy-to-use fast text search and index
24 ch was conducted using PubMed as the primary search engine and EMBASE as a secondary search engine.
25 S describe recent improvements to the PubMed search engine and outline plans for the future, includin
26                               Internet-based search engine and social media data may provide a novel
27                               Internet-based search engine and social media data may reflect the occu
28 ides the data expansion, we also updated the search engine and visualization tools.
29                    ProSight PTM is the first search engine and Web environment for identification of
30 table now supports state-of-the-art database search engines and a convenient command line interface f
31           Accessing health information using search engines and simple search terms is not efficient.
32                            While general Web search engines and specialized information retrieval (IR
33                   The integrated maps, a SNP search engine, and a Java-based tool for viewing candida
34 ed a new relational database and an improved search engine, and all programs have been rewritten.
35  Candidate structures retrieved with the MTS Search Engine appear in a report window providing formul
36 terature is a major challenge since existing search engines are not designed to search literature for
37                           Automated database search engines are one of the fundamental engines of hig
38                                              Search engines are provided to allow users to easily que
39  a rat kidney protein sample and the SEQUEST search engine as an example.
40 ill also be included in SRS, BLAST and FASTA search engines at the European Bioinformatics Institute.
41  identifies protein sequences using database search engines, at the core of which is a score that mea
42                  In this study, we develop a search engine, AutoMass, to automatically assign ion ser
43  Entrez provides two major analysis tools, a search engine based on sequence and structure 'neighbori
44 C-termini of tryptic peptides, and second, a search engine (based on the Morpheus algorithm) optimize
45 -mediated AR and NAR with MEDLINE and PubMed search engine between January 1966 and December 2014.
46                            On the down side, search engines bias the traffic of users according to th
47 ble to be selected and applied from a single search engine binary.
48                                  Algorithmic search engines bridge the gap between large tandem mass
49                             Our query-driven search engine, called SPELL, is available at http://func
50                        In computer science a search engine can be improved by considering networks of
51                          Improved literature search engines can save researchers time and effort by m
52                        Several new web-based search engines combine searches of sequence similarity a
53 by small margins, our results suggest that a search engine company has the power to influence the res
54 lly large in countries dominated by a single search engine company.
55         To our knowledge, all existing MS/MS search engines compute scores individually between a giv
56  still in their early days and that multiple search engines could be used to reduce individual biases
57 ll experiment meta-data, and exposes data to search engine crawlers (Semantic Agents) such as Google
58 e estimation of disease prevalence in online search engine data (e.g., Google Flu Trends (GFT)) has r
59 stimation (B-SHADE), is introduced to reduce search engine data bias from a geographical perspective.
60 knowledge, this is the first study to reduce search engine data bias levels through the use of rigoro
61                         While the utility of search engine data for disease surveillance has been dem
62                                     Internet search engine data has the potential to be an efficient,
63  Trends allows the download of de-identified search engine data, which has been used to demonstrate t
64 s by combining traditional disease data with search engine data.
65 ntify and reduce biases that are embedded in search engine data.
66                                           A 'search engine' derived from these motif descriptors corr
67 ransform mass spectrometry, beginning with a search engine developed "in house" that generates a hypo
68 tions are mainly due to the problem that the search engines do not effectively deal with multi-term q
69 ate than the ad-hoc models generally used by search engines (e.g., SEQUEST) and, surprisingly, approa
70  citations identified by the text similarity search engine eTBLAST.
71  Image Finder (YIF) is a publicly accessible search engine featuring a new way of retrieving biomedic
72 ed data; and (v) a keyword-based Google-like search engine for finding the needed information intuiti
73         Here, we present GeNemo, a web-based search engine for functional genomic data.
74                This approach provides a good search engine for high-throughput epistasis analyses.
75                              FACTA is a text search engine for MEDLINE abstracts, which is designed p
76                        Conceptually, it is a search engine for PPIs analogous to PubMed for scientifi
77 o our knowledge, this is the first real-time search engine for protein structure comparison.
78 upole-FT hybrid mass spectrometer, and a new search engine for querying a custom database.
79 was developed as a freely available database search engine for the proteomics research community.
80                Our results indicate that the search engines for analyzing ETD derived MS/MS spectra a
81 KEGG and Predictome databases as well as two search engines for coexpressed genes/proteins using data
82 ng short phrases encased in direct quotes to search engines for exact matches would be optimal for bo
83 significance to protein identifications from search engines for mass spectrometric data.
84 t query of the draft sequence with the blast search engine found only one new beta-defensin gene (DEF
85 ster of Controlled Clinical Trials (CENTRAL) search engines from January 1, 1990 through March 8, 201
86 so available and a sensitive structure-aided search engine, FUGUE, can be used to search the database
87 mic data resources, we have developed a fast search engine, GEMINI, that uses a genomic profile as a
88                            Unlike text-based search engines, GeNemo's searches are based on pattern m
89 2004 until 2012, we draw on records from the search engine Google and online encyclopedia Wikipedia a
90                                     The SCOP search engine has also been updated, and a set of links
91 relational database, BIOMOLQUEST: A powerful search engine has been built using this database as a ba
92 o expand the functionality of the rrnDB, the search engine has been redesigned to allow database sear
93 the Internet, with sophisticated algorithmic search engines, has made accessing information as easy a
94                                              Search engines have become key media for our scientific,
95                                          New search engines have been implemented to combine sequence
96 literature was conducted using the following search engines: http://www.google.com; Thomson's ISI Web
97                                      The MTS Search Engine identifies unknowns quickly and efficientl
98 ptides and analyzed by MALDI-MS using mascot search engine, immunoprecipitation, immunoblotting, and
99                                          The search engine implements the K-score algorithm, generati
100  built the Suns program: a real-time, atomic search engine integrated into the PyMOL molecular visual
101                                  The BioText Search Engine is a freely available Web-based applicatio
102                                          The search engine is a work in progress, and more functional
103 d records and a 'tools' section where an MS1 search engine is currently implemented.
104 ptide pre-screening technique for MSMS-based search engines is validated by using PFSM with Mascot an
105 hmic control to give a chemical 'real-space' search engine leading to the discovery and isolation of
106 e sequence identification by common database search engines, MAGIC generates in silico spectra by ove
107 e to a variety of attitudes and beliefs, the search engine manipulation effect.
108            It is a standalone version of the search engine of the popular Dali server.
109                                     Entrez's search engine offers several tools to assist biologist u
110 8, 2016, to March 25, 2016, using the Google search engine on the Chrome and Internet Explorer web br
111                        There is currently no search engine or tool that can analyze pathway images, e
112 echnologically relevant applications such as search engines or pattern recognition circuits, and open
113 escribed here could be used to optimize some search engine parameters before human evaluation.
114                                          The search engine parses the database and returns hits that
115 ts three types of query terms in the updated search engine: PDB or NDB identifier, nucleotide sequenc
116     This allowed use of an open-modification search engine, Popitam, to interpret the tandem mass spe
117 nterests explains the observed mitigation of search engines' popularity bias.
118                      We describe the protein search engine "ProFound", which employs a Bayesian algor
119                        To this end, Entrez's search engine provides several powerful features: (i) li
120                         To this end Entrez's search engine provides three powerful features.
121                        To this end, Entrez's search engine provides three powerful features: (i) Link
122 ased influenza surveillance system that uses search engine query data to estimate influenza activity
123 ir searching behavior in addition to the way search engines rank pages.
124                           We present the EBI Search engine, referred to here as 'EBI Search', an easy
125 000 references extracted from eight clinical search engines, related to pain and analgesia, agitation
126                                          The search engine reports LPI scores for match partners as w
127                                        While search engine results can easily be combined to increase
128                             As most sequence search engines return results even for 'unmatchable' spe
129 , and then select the relevant file when the search engine returns a set of results.
130                                              Search engines running on MEDLINE abstracts have been wi
131                 Less than one quarter of the search engine's first pages of links led to relevant con
132                                 The existing search engines such as PubMed, however, have limitations
133  identifications generated by an appropriate search engine, such as SEQUEST, refined with high resolu
134 hput experiments, mass spectrometry database search engines, such as MASCOT provide a ranked list of
135  the SNP Function Portal includes a powerful search engine that accepts different types of genetic ma
136 hensive resource for curated gene sets and a search engine that accumulates biological knowledge for
137                       Currently, there is no search engine that can retrieve specific figure types.
138           To our knowledge, this is the only search engine that can simultaneously support global and
139 ntions have unambiguous names, and to have a search engine that identifies all trials that meet a use
140 ess this problem, we present MedEvi, a novel search engine that imposes positional restriction on occ
141 ccessible for download and can work with any search engine that interprets ETD data of N-linked glyco
142 a general fashion to produce a very powerful search engine that is capable of locating members of a g
143               We present a sequence database search engine that is specifically designed to run effic
144 on from the Hammerhead docking system with a search engine that relies on a surface-based molecular s
145 eatures are implemented in Interrogator, the search engine that runs behind the Pro ID, Pro ICAT, and
146           To assist this task, we designed a search engine that uses a compact database to quickly id
147                             GEMINI is a fast search engine that uses a query genomic profile to searc
148  hardware realization of a parallel database search engine that, when running on a Xilinx Virtex 2 FP
149                    The PIR web site features search engines that use sequence similarity and database
150  emphasis is given to the bias introduced by search engines, the nature of scientific content encount
151 sequence tags was performed by two different search engines: the ProteinInfo program from the Protein
152 tion of peptides is performed using multiple search engines, their output combined and validated usin
153              We subsequently used the PubMed search engine to identify any scientific studies evaluat
154 e mass spectrometry using UPLC-QTOF and PLGS search engine to substantiate the confidence level of th
155 R-Tandem adapts the popular X!Tandem peptide search engine to work with Hadoop MapReduce for reliable
156                Using traditional query-based search engines to manually collect relevant materials is
157 he Names of Known Organisms and will develop search engines to mine the vast quantities of biodiversi
158 mology screening utilizes sequence alignment search engines to recognize homologs.
159 zes Solr/Lucene, a high-performance scalable search engine, to quickly query large data collections.
160                     PubMed and Ovid were the search engines used.
161                               In this study, search engine user content was identified by surveying s
162  resource locators (URLs) from each of eight search engines using the search term "melanoma" were ret
163                           The most effective search engine utilized model-driven exhaustive search an
164                                            A search engine was developed to retrieve tables and figur
165 5 health Web sites and content provided by 1 search engine was evaluated by 34 physicians using struc
166                                  A PSI-BLAST search engine was implemented to help users identify tem
167 rage and recency of the major World Wide Web search engines was analyzed, yielding some surprising re
168                          Accessibility of 14 search engines was assessed using a structured search ex
169                             Using the PubMed search engine, we conducted an observational study of tr
170                              By using online search engines, we found potential miRNA response elemen
171 acterial behavior and developing image-based search engines, we were able to identify fundamental app
172           Internet searches using the Google search engine were performed to identify the websites of
173                         Both Ovid and PubMed search engines were queried with a particular focus on h
174                                        These search engines were used in conjunction with the sequenc
175 latform-independent and is applicable to any search engine which outputs a single score for a peptide
176 NE is a web-based gene-specific genomic data search engine, which allows users to search over 5.9 mil
177 ll of 84% in the top 100 returned genes as a search engine, which improves the discovery engine by 12
178                             The conformation search engine, which is notable for its high speed and i
179 ia organism pages, genome browsers and BLAST search engines, which are implemented via the open-sourc
180 g behaviour in the form of queries to online search engines, which are submitted by millions of users
181                             In addition, the search engine will provide two types of related images:
182                                     A simple search engine with a graphical user interface is provide
183                                     A simple search engine with a graphical user interface is provide
184 g chemical, sequence and 3D data in a single search engine with a range of search and visualisation o
185 ients identified by two widely used Internet search engines with large indexes.
186 4.1.46 or GPS with Mascot engine was used as search engines with SwissProt or IPI human as the databa
187  identified in March 2000 using ten Internet search engines with the search term "Personal Medical Re
188  searches to include text archived by online search engines would drastically increase comparison abi

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