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1 the very rapid increase in the level of RpoS sigma factor.
2 anscription of sigR, encoding an alternative sigma factor.
3 n fits a cavity between the beta subunit and sigma factor.
4 bN functions as a sigma(BldN) -specific anti-sigma factor.
5 ti-sigma factor is controlled to release the sigma factor.
6 pendent on sigma(E), an alternative ECF-type sigma factor.
7 ation and dissociation of the RNA polymerase sigma factor.
8 so called RpoS), the general stress response sigma factor.
9 romoter that is controlled by an alternative sigma factor.
10 out displacement of the promoter recognition sigma-factor.
11 show a protein interacting with the NCR of a sigma-factor.
12 ia requires specific promoter recognition by sigma factors.
13 s (TCSs) and extracytoplasmic function (ECF) sigma factors.
14 ing a unique network topology of interacting sigma factors.
15 and are involved in the interaction with the sigma factors.
16 ctors called extracytoplasmic function (ECF) sigma factors.
17 esent the largest and most diverse family of sigma factors.
18 anisms, but not to more diverged alternative sigma factors.
19 gene expression regulated by nuclear-encoded sigma factors.
20 , including two putative RpoH ("heat shock") sigma factors.
21 egion characteristic of a new family of anti-sigma factors.
22 cialized stress responses involving multiple sigma factors.
23 d by a cascade of alternative RNA polymerase sigma factors.
24 omprises 41 direct interactions among all 13 sigma factors.
25 ii) distinct communities containing multiple sigma factors.
26 ologous promoters by expressing heterologous sigma factors.
27 s selectively to group 1 and certain group 2 sigma-factors.
28 (NCR), which is present only in housekeeping sigma-factors.
29 ree of susceptibility varies among different sigma-factors.
32 r coupling of asymmetric septum formation to sigma factor activation and identifies a surface involve
34 ve feedback regulation insulates alternative sigma factor activity from competition with the housekee
35 algT, rpoN, and rpoD caused minor changes in sigma factor activity, resulting in remodeling of the re
36 KinB regulates virulence through the global sigma factor AlgU, which plays a key role in repressing
38 ve in the polar flagellum biosynthesis FliAP sigma factor also outcompeted WBWlacZ but not to the sam
39 RNAP in vivo and in vitro, independently of sigma factor and away from the main nucleic-acids-bindin
40 otein, PhyR, which functions as an anti-anti-sigma factor and regulates transcription of genes requir
41 idy arises through mutation of the mucA anti-sigma factor and subsequent activation of the AlgU regul
42 a sequence-specific interactions between the sigma factor and the promoter DNA while moving downstrea
43 ompetition between principal and alternative sigma factors and hence the transcription profile of the
45 ons is established between DNA, RNAP and the sigma-factor and the formation of functional RPo occurs
46 strain (SigB is the only functional group 2 sigma factor) and down-regulated in the DeltasigB strain
47 was initiated by the degradation of its anti-sigma factor, and was accelerated in a dual positive fee
50 by a mechanism distinct from that of classic sigma factor antagonists (anti-sigma factors), which bin
51 de regulation of kinases, generation of anti-sigma factor antagonists, and regulation of circadian cl
52 ough proteolysis of three transmembrane anti-sigma factors, anti-SigK, -L, and -M, but there are also
62 ing about 14 extracytoplasmic function (ECF) sigma factors, are affected by oxidative stress, and one
66 The complex reveals an unprecedented anti-sigma factor binding mode: upon PhyR(SL) binding, NepR f
67 ent growth conditions is nearly static, with sigma factor binding profiles almost invariant to enviro
68 cription requires recognition of appropriate sigma-factors by the core enzyme (core2: alpha2betabeta'
69 ance mechanisms using a group of alternative sigma factors called extracytoplasmic function (ECF) sig
70 gs establish a mechanism whereby the primary sigma factor can exert direct effects on the composition
74 ring competence development, the alternative sigma factor ComX is activated, which in turn, initiates
77 ivating sigma(70) -dependent and alternative sigma factor-dependent genes required for stress surviva
78 onally regulates the general stress response sigma factor differently than what was described for oth
84 Conversely, significant changes in specific sigma factor expression were only observed upon adaptati
87 PbifA promoter is dependent on the flagellar sigma factor FliA, and positively regulated by ppGpp and
88 ivity from competition with the housekeeping sigma factor for RNA polymerase and allows multiple stre
94 tuberculosis pathogenesis, we targeted a key sigma factor gene, sigL, activated in mycobacterium-infe
95 egions to different transcription factor and sigma-factor genes, resulting in perturbations that span
97 s shape the response of comX, an alternative sigma factor governing expression of the late competence
99 o code for the pathogen's only annotated ECF sigma factor, homologous to RpoE, known in Escherichia c
100 ulated through sequestration by cognate anti-sigma factors; however, for most systems, it is not know
101 alignments of CsrR orthologs and other anti-sigma factors identified a CsrR-specific region characte
102 We present the first analysis of an ECF15 sigma factor in a vector-borne human pathogen and conclu
104 of SigV, an extracytoplasmic function (ECF) sigma factor in E. faecalis, and that the deletion of si
110 ulatory interactions between M. tuberculosis sigma factors in an E. coli model system, validation of
111 pe purine synthesis in Bacteria and complete sigma factors in Archaea similar to those in Bacteria.
112 Despite the central role of alternative sigma factors in bacterial stress response and virulence
113 Other suppressors highlight the roles of ECF sigma factors in counteracting the deleterious effects o
117 ork was to determine the role of alternative sigma factors in the stress response of V. parahaemolyti
118 haracterized by activation of RNA polymerase sigma factors, including the late-expressed sigma(G).
119 iloti genome encodes 14 of these alternative sigma factors, including two putative RpoH ("heat shock"
120 polymerase (RNAP) binding to a promoter, the sigma factor initiates DNA strand separation and capture
121 RNA polymerase (RNAP) holoenzyme containing sigma factor initiates transcription at specific promote
123 eria is often mediated by alternative sigma (sigma) factors interacting with core RNA polymerase.
125 it is not known how the activity of the anti-sigma factor is controlled to release the sigma factor.
128 d and the hydrolysis of periplasmic CSS anti-sigma factors is widely observed, we hypothesize that cl
129 codes sigma(V), an extracytoplasmic function sigma factor, is induced by lysozyme, which damages the
132 bridges between the Rip1 PDZ domain and anti-sigma factor M (Anti-SigM), a Rip1 substrate, but not An
134 ytoplasmic function sigma factor (MibX)/anti-sigma factor (MibW) complex and an additional transcript
135 a pathway-specific extracytoplasmic function sigma factor (MibX)/anti-sigma factor (MibW) complex and
137 Here we report the role of a predicted anti-sigma factor, MSMEG_6129 and a predicted eukaryotic like
138 a mechanism whereby proteolysis of the anti-sigma factor MucA leads to active sigma(22) allowing P.
139 ered to the cytoplasmic membrane by the anti-sigma factor MucA that inhibits alginate production.
141 growth of S. coelicolor and studies in three sigma factor mutant strains demonstrated that three of t
142 loroplast transcription in photoreceptor and sigma factor mutants under controlled light regimes in A
143 s governed by an alternative transcriptional sigma factor named sigma(S) (RpoS) that associates with
144 e organized into three regulons based on the sigma factor needed for their transcription (RpoD [sigma
146 uding the sigma factor sigma(EcfG), its anti-sigma factor NepR, and the anti-anti-sigma factor PhyR.
147 ter crescentus, including sigma(T), its anti-sigma factor NepR, the anti-anti-sigma factor PhyR, and
151 he operational, and functional states of the sigma factor network in Geobacter sulfurreducens, reveal
152 he interplay between different levels of the sigma factor network organization is fundamental to char
153 Analysis of the operational state of the sigma factor network shows a highly modular structure wi
156 point mutations in genes encoding the major sigma factor of RNA polymerase (sigA), a cell shape-dete
157 Because extracytoplasmic function (ECF) sigma factors often regulate adaptation to environmental
160 egulation and coregulation of sigma and anti-sigma factor pairs, provides structural information that
161 ), its anti-sigma factor NepR, the anti-anti-sigma factor PhyR, and the transmembrane sensor kinase P
164 ic event, which is widespread among CSS anti-sigma factors, produces two distinct domains that intera
165 economical and exquisite control of the ECF sigma factor protein level for the proper cell different
166 nction sigma factor (PspX), its cognate anti-sigma factor (PspW), and a transcriptional activator (Ps
167 atory proteins: an extracytoplasmic function sigma factor (PspX), its cognate anti-sigma factor (PspW
168 hibits the expression of the iron-starvation sigma-factor PvdS, thereby repressing the production of
170 or in RNA polymerase holoenzyme to a group 2 sigma factor redirects transcription when cyanobacteria
171 omponent signal transduction and alternative sigma factor regulation to control transcription of gene
174 an uncharacterized extracytoplasmic function sigma factor regulon, an event that has been reported to
180 that a previously unstudied B. quintana ECF sigma factor, RpoE, is involved in the transition from t
181 the extracytoplasmic function RNA polymerase sigma factor RpoE2 consensus sequences displayed a sharp
182 The rpoN mutant, which lacks the alternative sigma factor RpoN (sigma(54)), accumulated high levels o
183 Neisseria elongata as a model, we show that Sigma factor RpoN (sigma(54)), Integration Host Factor,
189 The stationary phase/general stress response sigma factor RpoS (sigma(S)) is necessary for adaptation
190 increased expression of the stress response sigma factor RpoS and many of its targets in stationary
191 trikingly, overproduction of the alternative sigma factor rpoS and of the regulatory gene gadE result
193 n Borrelia burgdorferi (Bb), the alternative sigma factor RpoS plays a central role during Bb's adapt
194 the stationary phase by the stationary-phase sigma factor RpoS, which was also reduced dramatically u
200 s partially mediated by the stationary phase sigma factor, RpoS, which was also shown to positively r
201 its anti-sigma factor RsbW and the anti-anti-sigma factor RsbV plays a critical role in shaping the n
202 RsbU and RsbP phosphatases or the anti-anti-sigma factor RsbV, all of which contribute to posttransl
203 f the phosphorylation state of the anti-anti-sigma factor RsbV, and in vitro transcription assays, in
204 y of the synthesis rates of sigmaB, its anti-sigma factor RsbW and the anti-anti-sigma factor RsbV pl
206 is, that in an eep deletion mutant, the anti-sigma factor RsiV is only partially degraded after lysoz
210 the proteins purified, the SigT cognate anti-sigma factor RstA ranked the top with the most total ind
214 tants that were defective in each of the six sigma factor (SIG) genes that encode proteins utilized b
215 ion of genes for the nuclear encoded plastid sigma-factors, SIG1-6, which code for components of the
217 on a consensus sequence for the housekeeping sigma factor SigA and an A+T-rich upstream element for R
219 cile orthologue of the flagellar alternative sigma factor SigD (FliA; sigma(28)) mediates regulation
226 structure of RbpA and identify the principle sigma factor sigma(A) and the stress-induced sigma(B) as
228 stress response (GSR) system, including the sigma factor sigma(EcfG), its anti-sigma factor NepR, an
229 of the alternative extracytoplasmic function sigma factor sigma(EcfG), which redirects transcription
230 e of genes, including the forespore-specific sigma factor sigma(F) and the mother cell-specific sigma
231 roduced under the control of the sporulation sigma factor sigma(F) to create a negative feedback loop
235 lus subtilis extracytoplasmic function (ECF) sigma factor sigma(M) is inducible by, and confers resis
236 rA utilizes its hydrophobic core to bind the sigma factor sigma(R) preventing its association with RN
237 led by the major stationary phase and stress sigma factor sigma(S) (RpoS), and also indirectly regula
238 he rpoS gene, which encodes a general stress sigma factor sigma(S), as a model system, and show that
240 to facilitate competition of the alternative sigma factor sigma(X) for access to core polymerase.
241 ubtilis, the extracytoplasmic function (ECF) sigma factors sigma(M) , sigma(W) and sigma(X) all contr
242 ng domains to activate the mRNAs of both the sigma-factor sigma(S) and the RicI protein, a previously
245 ed for formation of a complex with the major sigma factor (sigma(A)) and reaction with NO disassemble
246 ng elevated expression of the general stress sigma factor (sigma(B)) regulon, which is required for C
247 nt signal transduction (TCS) and alternative sigma factor (sigma) regulation to control transcription
248 showed a decrease in binding affinity to the sigma-factors (sigma(70), sigma(32) and sigma(38)) compa
249 in triggering dissociation of the alternate sigma factor, sigma(28), from a nonfunctional sigma(28)-
250 coli, the HSR is regulated by an alternative sigma factor, sigma(32) , which is encoded by the rpoH g
256 enus Streptococcus depends on an alternative sigma factor, sigma(X), for coordinated synthesis of 23
257 by two distinct classes of sequence-specific sigma factors, sigma(70) or sigma(54), that differ both
258 cific activation of the sporulation-specific sigma factors, sigma(H) (early), sigma(F), sigma(E), sig
259 on of a member of the ECF30 subfamily of ECF sigma factors, sigma(V) in Bacillus subtilis, is control
264 coelicolor, the protein stability of an ECF sigma factor SigT, which is involved in the negative reg
265 ComRS pheromone circuit and the alternative sigma factor SigX and infer that transformation is even
266 by increasing expression of the alternative sigma factor SigX, which in turn allows expression of co
268 fascinating biological problems (alternative sigma factors, sporulation, swarming, biofilm formation,
271 s that of tcdR, which encodes an alternative sigma factor that activates tcdA and tcdB expression.
274 of a catalytic core enzyme in complex with a sigma factor that is required for promoter-specific tran
275 e 5'-triphosphate of the nascent RNA and the sigma factor that may function to stabilize the short RN
277 RsrA is an archetypal zinc-binding anti-sigma factor that responds to disulfide stress in the cy
278 esults explain how Crl distinguishes between sigma factors that are largely homologous and activates
280 a widespread mechanism involves alternative sigma factors that redirect transcription toward specifi
282 of the best-studied examples of alternative sigma factors: the sigmaB network that controls the gene
283 ma factors), which bind directly to a target sigma factor to prevent its association with RNA polymer
284 concerning the light environment by a single sigma factor to regulate chloroplast transcription.
285 gative regulator of RpoE that sequesters the sigma factor to regulate gene expression based on condit
287 or RNA polymerase and allows multiple stress sigma factors to function simultaneously with little com
289 ce of unstructured omega, the association of sigma-factors to the core is less efficient, suggesting
290 finities of three different Escherichia coli sigma-factors to the same core RNAP with variations in t
291 AS-regulated extracytoplasmic function (ECF) sigma factor, to couple the secretory activity of the T3
292 atory categories-including stress-associated sigma factors, transcription factors, and toxin-antitoxi
293 plasmic function (ECF) family of alternative sigma factors: VP0055, VP2210, VP2358, VP2578, and VPA16
294 We have demonstrated here that one such sigma factor, VP2578, a homologue of RpoE from Escherich
295 aled that the protein degradation of the ECF sigma factor was initiated by the degradation of its ant
296 ching from housekeeping factors to alternate sigma-factors when the organism senses a change in its p
298 at of classic sigma factor antagonists (anti-sigma factors), which bind directly to a target sigma fa
300 promoter escape model using a two-component sigma factor YvrI and YvrHa from Bacillus subtilis that
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