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1 ielding a DNA:RNA hybrid and a displaced DNA single strand.
3 nique ribonuclease activity that cleaves the single-stranded 3'-end from tRNAs that contain guanine d
8 but also reporter gene expression from both single-stranded and double-stranded (self-complementary)
10 echanisms, homologous recombination (HR) and single strand annealing (SSA), and in conferring resista
12 shifted DSB repair toward highly deleterious single-strand annealing (SSA) and end-joining processes
13 d DNA ends, we addressed the contribution of single-strand annealing factors HR Rad52 and translesion
20 o 3' excision by exonuclease 1 (Exo1) from a single-strand break 5' to the mispair, excising the misp
21 mes involved in DNA base excision repair and single-strand break repair (SSBR) and is important for g
22 ith APLF joins repair scaffolds that support single-strand break repair and non-homologous end joinin
23 in XRCC1 exhibited not only reduced rates of single-strand break repair but also elevated levels of p
26 nteraction module in the regulation of a key single-strand break resection function of APE2, and also
27 etermined the kinetics and thermodynamics of single-stranded break ligation by LIG3alpha and LIG3beta
29 DP-ribosyltransferases promote repair of DNA single strand breaks and disruption of this pathway by P
30 r near-normal XRCC1 recruitment at oxidative single-strand breaks (SSBs) as indicated by the requirem
34 obases at 37 degrees C from both double- and single-stranded circular template DNA using specific pri
36 e detected for the telomere repeat TTAGGG in single-stranded configuration, showing that secondary st
40 educed graphene oxide aerogel labeled with a single strand DNA (ss-HSDNA/rGOae) modified on a rotatin
41 de experimental evidence that ComFA binds to single stranded DNA (ssDNA) and has ssDNA-dependent ATPa
42 ipment and facilitates the immobilization of single stranded DNA (ssDNA) probe sequences on a wide va
43 ed through pH-assisted thiol-gold bonding of single stranded DNA and salt aging, with preconjugated b
44 telomeric G-quadruplex DNA to complementary single stranded DNA and to telomere binding protein POT1
47 stranded MLPA products and subsequently to a single stranded DNA reporter probe bearing a HRP molecul
48 ch is able to detect hybridization of probe (single stranded DNA-ssDNA) and hybrid (double stranded D
51 t are unable to form t-loops or complex with single-strand DNA binding proteins, raising the question
52 y-mediated end-joining requires annealing of single-strand DNA ends, we addressed the contribution of
54 choice is determined by the generation of 3 single-strand DNA overhangs at the break that are initia
55 , AddAB or AdnAB) generates the requisite 3' single-strand DNA substrate for RecA-mediated strand inv
56 hannel of the N-tier and the unwound leading single-strand DNA traverses the channel through the N-ti
57 ent optical properties and biocompatibility, single-strand DNA-functionalized quantum dots have been
58 s, as well as numerous circular Rep-encoding single-stranded DNA (CRESS DNA) viral genomes, were iden
60 ate-free synthesis of high-molecular-weight, single-stranded DNA (ssDNA) and demonstrate that it proc
61 nnealase, a protein that binds complementary single-stranded DNA (ssDNA) and facilitates its annealin
62 A orchestrates these processes by binding to single-stranded DNA (ssDNA) and interacting with several
69 through the cell cytoplasm, and deliver the single-stranded DNA (ssDNA) genome to the nucleus, where
72 epsilon has greater contact with the nascent single-stranded DNA (ssDNA) of the leading strand on act
73 nerated DSB ends are processed to yield long single-stranded DNA (ssDNA) overhangs, which are quickly
74 te of cytosine deamination is much higher in single-stranded DNA (ssDNA) than in double-stranded DNA,
75 egy relies on the preferential adsorption of single-stranded DNA (ssDNA) to GO over aptamer-target co
77 tion and genomic substitution rates, RNA and single-stranded DNA (ssDNA) viruses may be important con
78 gle-stranded DNA binding protein (SSB) wraps single-stranded DNA (ssDNA) with high affinity to protec
79 (AFM) to show that Ver preferentially binds single-stranded DNA (ssDNA) with no sequence specificity
80 ate containing RNA:DNA hybrids and displaced single-stranded DNA (ssDNA), has emerged as a major sour
81 on of the DNA damage signal, accumulation of single-stranded DNA (ssDNA), sensitivity to replication
82 sitive coactivator of transcription (PC4), a single-stranded DNA (ssDNA)-binding protein, as a novel
87 PF and ERCC-XPF and show that the binding to single-stranded DNA (ssDNA)/dsDNA junctions is dependent
88 rial strategies (1) , especially small lytic single-stranded DNA (the microviruses) and RNA phages (t
90 lyzed, radical reaction process that cleaves single-stranded DNA and requires only redox-inactive met
91 nzymes, dimerization enables processivity on single-stranded DNA and results in higher levels of muta
92 exed, expanded proteomic technique that uses single-stranded DNA aptamers to assay 4783 human protein
96 Here the authors show that APOBEC3G binds single-stranded DNA as an active deaminase monomer, subs
98 nthetic sequence that mimics freshly unwound single-stranded DNA at replication fork showed that RPA
99 when recombinantly expressed had the general single-stranded DNA binding activity of RPA complexes, u
101 ralogous to the large subunit of the general single-stranded DNA binding heterotrimer replication pro
105 The nascent DNA colocalized with the VACV single-stranded DNA binding protein I3 in multiple punct
106 factor IIH prevented the accumulation of the single-stranded DNA binding protein replication protein
107 hairpin RNA (shRNA) screening, we identified single-stranded DNA binding protein replication protein
113 -CRISPR), a targeting strategy in which long single-stranded DNA donors are injected with pre-assembl
114 A double-strand breaks (DSBs) to generate 3'-single-stranded DNA facilitates DSB repair via error-fre
115 The separation and partitioning of large single-stranded DNA fragments of the homologous chromoso
116 We demonstrated that Brca2 protein prevents single-stranded DNA gap accumulation at replication fork
117 tions arise through the aberrant repair of a single-stranded DNA gap, in a process that is dependent
119 determine how they contribute to duplex and single-stranded DNA handling, and test the cellular cons
120 ded binding proteins both protect and expose single-stranded DNA has important implications for our u
122 unequivocally establishes the existence of a single-stranded DNA incorporation pathway in human cells
124 ude that ROS contribute to TLD by converting single-stranded DNA lesions into double-stranded DNA bre
125 NA hybridized to the complementary DNA and a single-stranded DNA loop, are formed in switch regions o
126 pose that these contigs correspond to linear single-stranded DNA molecules that fold onto themselves
127 olecule arrays by electrostatically adhering single-stranded DNA of gene-like length onto positively
128 ce receptor of interest is conjugated with a single-stranded DNA oligonucleotide, which hybridizes to
131 ins for Proteomics) is an approach that uses single-stranded DNA oligonucleotides to capture specific
132 and diffusion constants of several different single-stranded DNA oligonucleotides trapped in an MspA
134 fficient covalent immobilization of purified single-stranded DNA probe oligomers on cleaned gold micr
135 ine starvation leads to accumulation of both single-stranded DNA regions and intracellular ROS, and i
136 ivery of CRISPR/Cpf1 ribonucleoproteins with single-stranded DNA repair templates results in precise
137 nd resection, which generates long tracts of single-stranded DNA required for checkpoint activation a
139 gents, to prime second strand synthesis of a single-stranded DNA template and generate millions of pa
141 In the case of the ubiquitous human circular single-stranded DNA virus family Anelloviridae, there is
145 ore, the measurements of thermally denatured single-stranded DNA were carried out and the value of (G
147 eir destinations allows for a simple robot a single-stranded DNA with one leg and two foot domains fo
148 reaction (PER) cascades, which grow nascent single-stranded DNA with user-specified sequences follow
149 tional R-loops (RNA/DNA duplex and displaced single-stranded DNA) and DNA double-strand breaks (DSBs)
150 on associated with increased accumulation of single-stranded DNA, a substrate of APOBEC3A, triggering
151 bustly with specific sequences of unmodified single-stranded DNA, and we have identified five tags th
152 an essential replisome component that binds single-stranded DNA, has a role in replication-coupled n
153 sequence, the proteinosome payload (dextran, single-stranded DNA, platinum nanoparticles) is traffick
154 ese mutants compared with wild type DnaC for single-stranded DNA, suggesting that the substitutions a
155 tides, called staple strands, to fold a long single-stranded DNA, which is called a scaffold strand,
156 for deaminating cytosine bases to uracil in single-stranded DNA, with characteristic sequence prefer
157 ethods, this amplification requires only the single-stranded DNA-binding protein gp32 from bacterioph
158 nal proteins, including the telomeric repeat single-stranded DNA-binding protein Teb1 and its heterot
160 d of telomeric sequence-specific double- and single-stranded DNA-binding proteins, Taz1 and Pot1, res
161 Here, we present a study of surfactant and single-stranded DNA-wrapped SWNTs suspended in aqueous s
169 on ssDNA facilitates 5' flap cleavage near a single-strand-double strand junction while attenuating 3
172 delocalized phonon-like modes in DNA provide single-stranded "flexible hinges" to assist in loop form
174 s is formation of a heteroduplex, in which a single-strand from the broken DNA molecule pairs with a
176 processing nucleases, in order to close the single-stranded gap and terminate further resection.
179 ble-stranded DNA breaks (SSBs and DSBs), and single-stranded gaps can block progression of the DNA re
181 adruplexes formed by folding of GGG(TTAGGG)3 single strands in buffered solutions containing Na(+) ca
182 tes that the folding landscapes of short DNA single strands is much more complex than previously assu
184 This method combines an ultra-sensitive single-stranded library construction with barcoding erro
185 cing System of Digitalized Barcode Encrypted Single-stranded Library from Extremely Low (quality and
186 tructures (duplex, hairpin, G-quadruplex and single-stranded), ligand types (ion, small organic molec
189 manufactured electrode array and exposed to single-stranded MLPA products and subsequently to a sing
190 tem is composed of two nanoconjugates: (1) a single-stranded morpholino oligonucleotide (MORF1) attac
193 ion of U:G mismatches is translated into the single-strand nick required for error-prone synthesis is
194 signal (a hemi-methylated d(GATC) site or a single-stranded nick) and the replication error after th
195 avirales is composed of viruses that possess single-stranded, non-segmented negative-sense (NNS) RNA
196 spindle tuber viroid (PSTVd) is a circular, single-stranded, noncoding RNA plant pathogen that is a
198 semble of flexible polyelectrolytes, such as single-stranded nucleic acids (ssNAs), is complicated by
199 tic domain (CD2) alone is capable of binding single-stranded nucleic acids and is important for deami
200 to enable them to bind a variable number of single-stranded nucleotides depending on the salt and pr
201 eat to transfer G-quadruplex conformation to single strand of DNA sequence and release thrombin.
202 of a commercial Cas9 protein:crRNA:tracrRNA:single-strand oligodeoxynucleotide (ssODN) complex into
203 a CRISPR plasmid expressing Cas9/gRNA and a single-stranded oligodeoxynucleotide HDR donor template
204 ization of FOXO protein via CRISPR-assisted, single-stranded oligodeoxynucleotide-mediated homology-d
206 onversion with either double-stranded DNA or single-stranded oligonucleotide donors by up to 5.6-fold
207 DNA logic gate circuits typically provide a single-stranded oligonucleotide output, limiting the abi
208 and internalization of highly polar anionic single stranded oligonucleotides into cells and tissues.
209 overhangs in opposite orientations to which (single-strand) oligos rather than (double-stranded) adap
216 ransduced by the double-stranded but not the single-stranded recombinant AAV2 vectors progressed thro
217 unds, and that motifs are found in a loop or single stranded region of the potential RNA secondary st
218 e many different aspects of RNA ranging from single stranded regions to discrete secondary or tertiar
220 expressed COL1A gene, and co-injected with a single-stranded repair template into porcine zygotes.
221 xygen species, NOX2 oxidase, is activated by single stranded RNA and DNA viruses in endocytic compart
222 or the replication of various positive-sense single stranded RNA viruses, which hijack this cellular
224 ssential host factor for many positive-sense single-stranded RNA (+RNA) viruses including human patho
225 important roles in inhibiting positive-sense single-stranded RNA (+ssRNA) viral infection, especially
226 Higher ratios of HCV double-stranded to single-stranded RNA (ssRNA) correlated positively with I
227 show that topological structures containing single-stranded RNA (ssRNA) free of strong base pairing
228 ata from a competition assay between SLA and single-stranded RNA (ssRNA) indicate that SLA competes w
229 ndicates that small phages, particularly the single-stranded RNA (ssRNA) leviviruses, have a previous
230 The recent discovery of the positive-sense single-stranded RNA (ssRNA) Orsay virus (OV) as a natura
231 ly for adenoviruses, which resembles that of single-stranded RNA (ssRNA) viruses but differs from the
232 h pump their genome into a preformed capsid, single-stranded RNA (ssRNA) viruses, such as bacteriopha
233 rified human PRC2 recognizes G > C,U >> A in single-stranded RNA and has a high affinity for folded g
235 tion motif, domains are the largest class of single-stranded RNA binding domains in the human proteom
237 the HIV-1 genome, which is in the form of a single-stranded RNA enclosed inside a capsid shell, must
240 the transcription of the relatively flexible single-stranded RNA into a more rigid filamentous struct
242 (CCMV) is capable of packaging both purified single-stranded RNA molecules of normal composition (com
243 se H activity that act in concert to convert single-stranded RNA of the viral genome to double-strand
245 A virus (IAV) genomes are composed of eight single-stranded RNA segments that are coated by viral nu
246 lex RNA regardless of the orientation of the single-stranded RNA tail, it preferred a 5' to 3' polari
248 arainfluenza virus (PIV) is a negative-sense single-stranded RNA virus in the Paramyxoviridae family.
250 n is a common strategy among positive-sense, single-stranded RNA viruses for bypassing the host cell
252 stroviruses are nonenveloped, positive-sense single-stranded RNA viruses that cause gastrointestinal
263 of a uridine two nucleotides downstream in a single-stranded segment, which we rationalize structural
266 tiated by uracil-DNA glycosylase (UNG) or by single-strand selective monofunctional uracil DNA glycos
267 we report a method, which is dubbed SISSOR (single-stranded sequencing using microfluidic reactors),
268 oplex destabilization to release double- and single-strand siRNA and/or smaller siRNA-lipid complexes
270 sequence the three-dimensional structures of single stranded (ss) DNA required for aptamer applicatio
275 DNA replication forks generates stretches of single-stranded (ss) DNA on both strands that are expose
279 for the first time, the interaction of long single-stranded (ss) RNAs with cognate homologous double
282 perimentally construct diverse multikilobase single-stranded structures, including a 10,000-nucleoti
283 mportant for the processing of DNA ends into single-stranded substrates for homologous recombination.
284 lization of CpG oligodeoxynucleotide 1826, a single-stranded synthetic DNA adjuvant, eliciting an enh
285 r, G4-T-oligo has similar cellular uptake as single-stranded T-oligo, as shown by FACS analysis.
288 yeast, these breaks are resected to form 3' single-strand tails that participate in a homology searc
290 c mutations in hPOT1 OB-fold fail to bind to single-stranded telomeric DNA, eliciting a DNA damage re
291 lted out into a transcription bubble and the single-stranded template DNA is delivered to the RNAP ac
292 leolytic resection of DNA ends to generate a single-stranded template for the recruitment of another
293 NAP-promoter open complex (RPo) containing a single-stranded 'transcription bubble,' and selects a tr
296 Here, we created site-specifically modified single-stranded vectors for replication in primate (COS7
298 e the biomolecular interplay that G-rich DNA single-strands with one-end confined on graphene surface
299 g and protein capture of the displaced 3'-OH single strand, without a need for extensive end-resectio
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