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1 hylation at cap 1 on substrate SL RNA and U1 small nuclear RNA.
2 huttling, we demonstrate the shuttling of U1 small nuclear RNA.
3 tional regulation of the expression of an Sm small nuclear RNA.
4 in but with a 10-fold lower affinity than U1 small nuclear RNA.
5 binding to an RNA hairpin (U1hpII) in the U1 small nuclear RNA.
6 that alter either the protein U1-C or the U1 small nuclear RNA.
7 oncanonical mechanisms of base pairing to U1 small nuclear RNA.
8 A' protein complex and hairpin-loop IV of U2 small nuclear RNA.
9 ks generated with P120-4SU+2 contain the U11 small nuclear RNA.
10 ox C/D and H/ACA small nucleolar RNAs and U4 small nuclear RNA.
11 ting its association with the inhibitory 7SK small nuclear RNA.
12 and an H/ACA guide RNA, modify ribosomal and small nuclear RNAs.
13 P structure that contains the U2, U5, and U6 small nuclear RNAs.
14 ike Sm and like-Sm core peptides, which coat small nuclear RNAs.
15 the modification of ribosomal RNA and other small nuclear RNAs.
16 ing frames, 236 transfer RNAs (tRNAs) and 12 small nuclear RNAs.
17 e base-pairing interaction between U4 and U6 small nuclear RNAs.
18 able base pairing between the transcript and small nuclear RNAs.
19 cumulation of pre-tRNAs, pre-rRNAs, and some small nuclear RNAs.
20 rocessing of U6 RNA, one of the spliceosomal small nuclear RNAs.
21 5S and cytoplasmic 7SL as well as U2 and U6 small nuclear RNAs.
22 uclear pre-mRNAs, as well as the majority of small nuclear RNAs.
23 se II transcribes messenger RNAs and several small nuclear RNAs.
24 reading frames (ORFs) plus 13 tRNAs and four small nuclear RNAs.
25 roteins of RNA elements within pre-mRNAs and small nuclear RNAs.
26 enes encoding the messenger RNAs and several small nuclear RNAs.
27 S and 28S rRNAs and levels of the U-class of small nuclear RNAs.
28 it complex required for 3'-end processing of small nuclear RNAs.
29 rimethylguanosine (TMG) caps on spliceosomal small nuclear RNAs.
30 ng RNAs, which share some of the features of small nuclear RNAs.
31 d structural features with cellular Sm-class small nuclear RNAs.
32 vertebrates the export of mRNA, like that of small nuclear RNA, 5S rRNA, and transport factors such a
34 iation of the large inactive P-TEFb:7SK RNP (small nuclear RNA 7SK ribonucleoprotein) complex and the
35 s inhibited by the coordinate actions of 7SK small nuclear RNA (7SK snRNA) and hexamethylene bisaceta
36 rt that LARP7, BCDIN3, and the noncoding 7SK small nuclear RNA (7SK) are vital for the formation and
38 two ncRNAs implicated in RNA processing: U1 small nuclear RNA, a component of the spliceosome, and M
39 for catalysis by unwinding base-paired U4/U6 small nuclear RNAs, a step that must be precisely timed.
40 ticular, both types of promoters utilize the small nuclear RNA activating protein complex (SNAP(c)) a
41 C-4, the Myb-like DNA-binding subunit of the small nuclear RNA activating protein complex, binds piRN
43 e 57-kDa subunit is orthologous to the human small nuclear RNA-activating protein (SNAP)50, which is
44 scription factors, a partially characterized small nuclear RNA-activating protein complex (SNAP(c)) a
45 sphorylates the general transcription factor small nuclear RNA-activating protein complex (SNAP(C)) t
46 wo of the three TAFs in the pol III-specific small nuclear RNA-activating protein complex (SNAPc).
47 n a unique transcription factor known as the small nuclear RNA-activating protein complex (SNAPc).
49 A, TFIIB, and TFIIH which, together with the small nuclear RNA-activating protein complex, form a tra
50 ll four hypertrophic signals dissociated 7SK small nuclear RNA, an endogenous inhibitor, from cyclin
51 ~160-nt-long RNAs, including spliceosomal U6 small nuclear RNA and a cyclic-di-AMP binding riboswitch
53 'Sm' sequence motif, form a complex with U6 small nuclear RNA and are required for pre-mRNA splicing
54 partmentalization by fluorophore-labeling U1 small nuclear RNA and observing its distribution in the
55 recursor, proper 3'-end processing of the U4 small nuclear RNA and some small nucleolar RNAs, and deg
56 tein particles (snRNPs), which consist of U1 small nuclear RNA and ten proteins, recognize the 5' spl
59 ent within snatched fragments and found that small nuclear RNAs and small nucleolar RNAs contributed
60 results in the misexpression of a variety of small nuclear RNAs and small nucleolar RNAs, an effect t
61 increases the levels of spliceosomal and U7 small-nuclear RNAs and corrects RNA processing defects i
62 oplasmic fraction, whereas Pem pre-mRNAs, U6 small nuclear RNA, and a spliced intron from another gen
63 The large complex is composed of P-TEFb, 7SK small nuclear RNA, and hexamethylene bisacetamide-induci
64 e the potential to pair with sequences in U1 small nuclear RNA, and mutations disrupting this pairing
65 nd metabolism, including processing of rRNA, small nuclear RNA, and small nucleolar RNA, and mRNA dec
66 nucleolar RNA, natural antisense transcript, small nuclear RNA, and small RNA using published dataset
67 an intricate network formed by U5, U2 and U6 small nuclear RNAs, and a pre-messenger-RNA substrate.
68 small RNAs, including the Epstein-Barr virus small nuclear RNAs, and newly synthesized progeny DNA.
69 ely block nuclear transport of spliced mRNA, small nuclear RNAs, and small nuclear ribonucleoproteins
70 clear organelles that are highly enriched in small nuclear RNAs, and that have long been thought to b
76 omplexes between the large subunit of the U2 small nuclear RNA auxiliary factor (U2AF65) with the spl
77 thylguanosine (TMG) cap found in many U-like small nuclear RNAs, but a subpopulation of nut-1 RNAs ca
78 esvirus saimiri (HVS) encodes seven Sm-class small nuclear RNAs, called HSURs (for Herpesvirus saimir
79 particular spliceosome components, including small nuclear RNAs, cause reproducible uniquely distribu
80 of three fluorescently tagged molecules: U7 small nuclear RNA, coilin, and TATA-binding protein (TBP
81 exon and a 'U1 domain' that binds to the U1 small nuclear RNA component of the U1 small nuclear ribo
82 ription factor SNAP(C), which binds to human small nuclear RNA core promoter elements and nucleates p
84 nts of the mRNA splicing machinery, comprise small nuclear RNAs, each complexed with a set of protein
85 n strain to screen a collection of mutant U2 small nuclear RNAs, each containing a point mutation nea
87 structure of a homologous stem-loop from U2 small nuclear RNA fits closely to the electron density o
88 least two multisubunit protein complexes, a small nuclear RNA-free structure similar to what was rep
89 is is, however, required for displacement of small nuclear RNAs from the Gemin5-containing subunits a
90 uide chemical modifications of ribosomal and small nuclear RNAs, functions that are carried out in th
91 reviously isolated a variant of the human U6 small nuclear RNA gene (87U6) and demonstrated that tran
92 mologous to SNAP50, a component of the human small nuclear RNA gene activation protein complex (SNAPc
93 t is transcribed from the optimized mouse U7 small nuclear RNA gene and contains the 5' stem-loop (p7
96 sses TAR-2 under the control of the human U6 small nuclear RNA gene promoter and here show that the U
105 lex SNAP(c) is required for transcription of small nuclear RNA genes and binds to a proximal sequence
106 s a dyad symmetry region located between two small nuclear RNA genes and is located upstream of the d
107 on mechanism differs from that of vertebrate small nuclear RNA genes and the SL RNA homologue in Asca
108 IIIB)-alpha governs basal transcription from small nuclear RNA genes by RNA polymerase III (pol III).
110 scription from yeast small nucleolar RNA and small nuclear RNA genes into adjacent genes is prevented
111 and deletion analyses of mammalian class III small nuclear RNA genes transcribed by RNA polymerase (p
114 cript; the RNA polymerase III-transcribed U1 small nuclear RNA has the same first four nucleotides as
115 etween group II introns and the spliceosomal small nuclear RNAs, however, have left this proposal in
116 te snoRNA, small Cajal body RNA (scaRNA) and small nuclear RNA in human and mouse cells by convention
117 nscribed nucleotide of spliced leader and U1 small nuclear RNAs in the kinetoplastid protozoan Trypan
120 show that a base-paired complex of U6 and U2 small nuclear RNAs, in the absence of the approximately
121 how that the Gemin5-containing subunits bind small nuclear RNA independently of the SMN complex and w
122 sequesters the 5'ss residues involved in U1 small nuclear RNA interactions, thereby inhibiting excis
124 ibonucleoprotein (U1-snRNP) that includes U1-small nuclear RNA is a highly conserved intranuclear mol
126 e branch site recognition region of yeast U2 small nuclear RNA is absolutely conserved in all eukaryo
130 plex often signals nuclear import for U-rich small nuclear RNAs, it is unclear how this Sm binding si
131 inding protein La recognizes UUU-3'OH on its small nuclear RNA ligands and stabilizes them against 3'
132 teins in the cytoplasm; these RNAs resembled small nuclear RNAs like U1 and U5 RNAs in their bi-direc
134 deletion strain, but can be suppressed by U2 small nuclear RNA mutations that hyperstabilize U2 stem
137 Cus2p and stem IIa-destabilized forms of U2 small nuclear RNA places high demands on the ATP-driven
138 l of motor neuron (SMN) complex delivers pre-small nuclear RNAs (pre-snRNAs) to the heptameric Sm rin
143 The Brr2 RNA helicase disrupts the U4/U6 di-small nuclear RNA-protein complex (di-snRNP) during spli
144 t contains two Sm motifs found in the common small nuclear RNA proteins and the LSm (like-Sm) family
146 tides 78 to 95, but not other regions, of U6 small nuclear RNA resulted in an inhibition of the depho
147 eview focuses on transport of messenger RNA, small nuclear RNA, ribosomal RNA, and transfer RNA betwe
150 erestingly, these three nucleolus-associated small nuclear RNAs (signal recognition particle RNA, tel
151 regions and the small RNAs, including tRNA, small nuclear RNA, small nucleolar RNA, and microRNA.
152 ed abundant small, noncoding RNAs, including small nuclear RNAs, small nucleolar RNAs (snoRNAs), cryp
155 snRNP) by the coordinated actions of the 7SK small nuclear RNA (snRNA) and hexamethylene bisacetamide
156 uborganelles that nonrandomly associate with small nuclear RNA (snRNA) and histone gene loci in human
157 RNA) splicing requires multiple spliceosomal small nuclear RNA (snRNA) and pre-mRNA rearrangements.
160 d clones spanning the Pol III-transcribed U2 small nuclear RNA (snRNA) and U3 snRNA/7SL RNA gene loci
162 ed in unwinding the 5' splice site (5'ss)-U1 small nuclear RNA (snRNA) base-pairing, to allow replace
163 es along with the Pol IV subunit NRPD1b; the small nuclear RNA (snRNA) binding protein SmD3; and two
164 fficiency, the ribozyme was inserted into U1 small nuclear RNA (snRNA) by engineering the U1 snRNA ex
165 with U1 and U2 gene loci, which produce the small nuclear RNA (snRNA) component of the respective sn
170 The distal control region of a human U6 small nuclear RNA (snRNA) gene promoter contains two sep
173 es of metaphase chromosome fragility: the U1 small nuclear RNA (snRNA) genes (the RNU1 locus), the U2
174 osomal fragile sites corresponding to the U1 small nuclear RNA (snRNA) genes (the RNU1 locus), the U2
176 RNA polymerase III transcription of human U6 small nuclear RNA (snRNA) genes both negatively and posi
179 The RNA polymerase (pol) II and III human small nuclear RNA (snRNA) genes have very similar promot
180 ty of eukaryotic organisms, transcription of small nuclear RNA (snRNA) genes is dependent upon a prox
181 re highly enriched at RNA Pol II-transcribed small nuclear RNA (snRNA) genes, and the loss of LEC res
182 and RNA polymerase III-transcribed mammalian small nuclear RNA (snRNA) genes, is essential for their
183 case of the human RNA polymerase II and III small nuclear RNA (snRNA) genes, whose core promoters co
187 2'-O-methylation and pseudouridylation of U6 small nuclear RNA (snRNA) hypothesize that these posttra
188 air with a complementary sequence in the U12 small nuclear RNA (snRNA) in a manner analogous to the p
189 We probe the structure of low-abundance U12 small nuclear RNA (snRNA) in Arabidopsis thaliana and pr
192 thyl-oligoribonucleotide complementary to U5 small nuclear RNA (snRNA) nucleotides 68 to 88 (BU5Ae) d
193 SK, an abundant and evolutionarily conserved small nuclear RNA (snRNA) of unknown function, as a spec
194 oduct levels is achieved by using a human U6 small nuclear RNA (snRNA) promoter to drive nuclear expr
197 new strategy: expressing a 5' end-mutated U1 small nuclear RNA (snRNA) to inhibit maturation of cypin
199 for the endonucleolytic cleavage of primary small nuclear RNA (snRNA) transcripts within the nucleus
200 Previously, we showed that spliceosomal U6 small nuclear RNA (snRNA) transiently passes through the
201 se to the catalytic Mg(2+) site in the U2/U6 small nuclear RNA (snRNA) triplex, and the 5'-phosphate
202 vivo association between coilin and rRNA, U small nuclear RNA (snRNA), and human telomerase RNA, whi
203 cleosides from the 3' end of spliceosomal U6 small nuclear RNA (snRNA), directly catalyzing terminal
204 assembled spliceosomal complex comprising U5 small nuclear RNA (snRNA), extensively base-paired U4/U6
205 all nuclear RNP (snRNP), composed of the 7SK small nuclear RNA (snRNA), MePCE, and Larp7, regulates t
206 RNAP II-transcribed cellular RNAs, including small nuclear RNA (snRNA), small nucleolar RNA (snoRNA),
207 pecifically interacts with stem-loop I of U2 small nuclear RNA (snRNA), that C protein disrupts U4:U6
208 , U-rich sequence called the Sm site in each small nuclear RNA (snRNA), to form the core domain of th
209 the survival motor neuron (SMN) protein, U2 small nuclear RNA (snRNA), U5 snRNA, and the small CB-sp
210 ryotic ribosomal RNA (rRNA) and spliceosomal small nuclear RNA (snRNA), uridines at specific sites ar
211 ng requires 5' splice site recognition by U1 small nuclear RNA (snRNA), which is replaced by U5 and U
212 proximal sequence element that recruits the small nuclear RNA (snRNA)-activating protein complex (SN
215 ) protein is essential for the biogenesis of small nuclear RNA (snRNA)-ribonucleoproteins (snRNPs), t
216 it is not involved in transcription from the small nuclear RNA (snRNA)-type, TATA-containing, RNA pol
227 3, +4, and +6) that do not base-pair with U1 small-nuclear RNA (snRNA), the molecule responsible for
228 pecially dependent on a functional U2 snRNP (small nuclear RNA [snRNA] plus associated proteins), as
229 no oligonucleotide [MO] and an engineered U7 small nuclear RNA [snRNA]) to correct this splicing defe
231 the spliceosome, a complex assembly of five small nuclear RNAs (snRNAs) and a large number of protei
232 , conditional production of 3'-extensions of small nuclear RNAs (snRNAs) and biogenesis of novel tran
233 The 5'-cap structure of most spliceosomal small nuclear RNAs (snRNAs) and certain small nucleolar
237 assembles the heptameric Sm protein core on small nuclear RNAs (snRNAs) and plays a critical role in
244 ng genes requiring RNAPII for transcription, small nuclear RNAs (snRNAs) display a further requiremen
245 risingly, we found that TOE1 associated with small nuclear RNAs (snRNAs) incompletely processed splic
246 osynthesis of U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs) involves the nuclear export
248 mRNAs and of precursors to the spliceosomal small nuclear RNAs (snRNAs) is the result of an essentia
250 noRNAs, was identified with the spliceosomal small nuclear RNAs (snRNAs) over 30 years ago, its funct
251 Cross-links identified in the U4 and U6 small nuclear RNAs (snRNAs) suggest U4/U6 stem I as a Br
253 lass of ubiquitously expressed, uridine-rich small nuclear RNAs (snRNAs) transcribed by RNA polymeras
256 es at their termini, features reminiscent of small nuclear RNAs (snRNAs) which are abundant and stabl
257 dvantage of our previous observation that U1 small nuclear RNAs (snRNAs) which bind upstream or downs
258 the cytoplasm, precursors to specific tRNAs, small nuclear RNAs (snRNAs), and small nucleolar RNAs (s
259 mitations, we previously proposed the use of small nuclear RNAs (snRNAs), especially U7snRNA to shutt
260 role in melting the duplex between U4 and U6 small nuclear RNAs (snRNAs), leading to the formation of
261 As (miRNAs), small nucleolar RNAs (snoRNAs), small nuclear RNAs (snRNAs), piwi-associated RNAs (piRNA
263 n tandemly repeated genes encoding U1 and U2 small nuclear RNAs (snRNAs), respectively; the PSU1 locu
264 ssing of a variety of RNAs, including tRNAs, small nuclear RNAs (snRNAs), small nucleolar RNAs (snoRN
265 ection of fluorescently labeled spliceosomal small nuclear RNAs (snRNAs), target the nascent transcri
266 previously unidentified, low-abundance human small nuclear RNAs (snRNAs), U4atac and U6atac, were cha
267 e assembly of heptameric Sm protein rings on small nuclear RNAs (snRNAs), which are essential for snR
268 es (CBs)-subnuclear compartments enriched in small nuclear RNAs (snRNAs)-and promotes efficient splic
277 hat the 27-nt repeats could be the source of small nuclear RNA specifically regulating eNOS expressio
278 tain essential spliceosome factors including small nuclear RNAs, splicing proteins, and endogenous pr
280 inhibit the export of both Rev protein and U small nuclear RNAs, suggesting that these nucleoporins p
282 exon can be prevented by coexpression of U1 small nuclear RNAs, termed shift-U1s, with complementari
284 th and without the association of 7SK RNA, a small nuclear RNA that is bound to approximately 50% of
286 O-methyl oligonucleotide complementary to U2 small nuclear RNA to study interactions between the UACU
288 rmational rearrangements of the spliceosomal small nuclear RNAs (U snRNAs) are essential for proper a
289 ll known cis-spliceosomal uridylic acid-rich small nuclear RNAs (U snRNAs), suggesting the existence
291 iking similarities to the cis-spliceosomal U small nuclear RNAs U1, U2, U4 and U5; for example, the S
295 promoters (tRNA(Met), tRNA(Val)), the human small nuclear RNA U6 gene (U6) and the adenovirus virus-
297 f noncoding RNAs, including the uridine-rich small nuclear RNA (UsnRNA) and enhancer RNA (eRNA), and
299 te the suppression of 3' end formation by U1 small nuclear RNA, which is known to bind pre-mRNA at th
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