ライフサイエンスコーパス: software

1 030 using age-period-cohort models (NORDPRED software).

2 al analyses were performed by using GraphPad software.

3 ates an output that can be visualized by VMD software.

4 ed behind sharing of other resources such as software.

5 regulatory interactions) using CellDesigner software.

6 estions, and freely available in open source software.

7 Analyses were performed by using software.

8 ed with comparable sequencing technology and software.

9 ne, and the images are analyzed using ImageJ software.

10 microscopy studies and quantified using Fiji software.

11 l benefit from using the presented model and software.

12 fluorescence microscopy, and image analysis software.

13 e treatment and after treatment using ImageJ software.

14 cation of the amplified product using ImageJ software.

15 s and uses publicly available bioinformatics software.

16 nce to run multiple local ancestry inference software.

17 y be analyzed by use of relevant specialized software.

18 e, using the Swiss-Model server and Modeller software.

19 automated optical coherence tomography-based software.

20 erformed by using Ingenuity Pathway Analysis software.

21 w and spines were analyzed with NeuronStudio software.

22 fication of glycans using in-house developed software.

23 h can perform pre-alignment much faster than software.

24 le X-ray detectors can be handled using this software.

25 r proposal has been implemented using Python software.

26 urrent state of commercial digital pathology software.

27 ons were generated using functional analysis software.

28 it the observed image by using semiautomatic software.

29 ular texture analysis was performed by using software.

30 oftware is available at compbio.cs.brown.edu/software.

31 ssion data were analyzed on nSolver analysis software.

32 d analyzed with the use of Stata statistical software.

33 ding of 12 as predicted by the Glide docking software.

34 algorithm, for further generalization of the software.

35 titative image analysis and using OLINDA/EXM software.

36 surfaces were exported from the Pentacam HR software.

37 Images were analyzed using ImageJ and IMARIS software.

38 as generated using GlaxoSmithKline's RandAll software.

39 t executable environments for bioinformatics software.

40 er definitions are provided in Supplementary Software 1.

41 for features with identifications from all 3 software, 92% of LipidMatch identifications by fatty acy

42 Here, we report a standalone software, aCcelerated Alignment-FrEe sequence analysis (

43 Incidence and Carrier Estimation Algorithm) software, adjusted for age at baseline data collection.

44 trength, statistical threshold, and analysis software affected classification accuracy.

45 groups of humans interacted with autonomous software agents (known as bots).

46 evaluated the performance of local ancestry software among different supported software packages, ma

47 Kinetic studies employing the modeling software AmyloFit show that NUCB1 affects both primary n

48 : (1) phonological training using 'Earobics' software and (2) a pharmacological intervention using do

49 The software and computed UHSs are freely available at githu

50 imited in how effectively they can work with software and data.

51 teaching solutions is that all the required software and databases are locally installed on the syst

52 implemented in R and leveraging Bioconductor software and design principles, provides for the coordin

53 Ethoscopes provide a software and hardware solution that is reproducible and

54 Because of its flexible design (software and hardware), more complex array scan patterns

55 puting, information passed between layers of software and implementations will differ markedly from i

56 an easily be implemented using off-the-shelf software and is illustrated using a reanalysis of the Wo

57 ommunities, and has formed the basis for new software and methods developments.

58 SNPS was obtained by imputation with IMPUTE2 software and reference phase data from the 1000 genome p

59 The package requires no additional software and runs on all major platforms.

60 y Doctor Evidence, a global medical evidence software and services company, across PubMed and EMBASE

61 Statistics was performed with Prism 7 software and student's unpaired t test.

62 We used both in silico docking software, and in vitro molecular and biochemical methods

63 grams were analyzed using MetaboliteDetector software, and normalized metabolite levels were compared

64 pport, multistep workflows, updated analysis software, and the ability to store, share, and publish d

65 ere comparable to other lipid identification software annotations, MS-DIAL and Greazy.

66 c, limited need that could be addressed by a software application (app) in the short-term future, usi

67 eviously, using both AD-LIBS and an existing software application for local ancestry inference, HAPMI

68 A custom-designed Android-based software application was developed to enable easy and cl

69 Device set-up instructions and analysis software are publicly available.

70 We recommend using this software as a QC step in NGS studies.

71 ChimeRScope is accessible as a standalone software at or via the Galaxy web-interface at.

72 (61% greater), as objectively measured using software-automated testing platforms.

73 While there is software available to generate linkage map graphics, non

74 re reproducible include making data sets and software available to other researchers so they can veri

75 DMRfinder is free and open-source software, available on GitHub ( github.com/jsh58/DMRfind

76 orescent staining and microspectroscopy with software-based spectral analysis, successful detection o

77 ence increasingly relies on custom-developed software, but much of this is not being made available t

78 enuation values (BD, noncommercial prototype software by Siemens Healthcare).

79 The proposed hardware and software, called bioluminescent-based analyte quantitati

80 One software, CalQuo (Calcium Quantification), offers some a

81 WE software can be used to control any dynamics engine, suc

82 eat content, the performance of GBS analysis software can vary by target organism.

83 tiple rounds of enrichment are required, the software cannot forecast the enrichment effort required.

84 ng the Zeiss Cirrus 5000 with Angioplex OCTA software (Carl Zeiss Meditec, Dublin, CA).

85 hine learning programs, but the hardware and software challenges are still considerable.

86 The predictor, based on eight software-chosen molecular descriptors, was optimized usi

87 onic circuits and wiring diagrams as well as software code.

88 The software converts these color values to a concentration

89 No software currently exists for visualizing GEMs that sati

90 ploration and Analysis (VTEA) image analysis software designed for efficient exploration and quantita

91 QuPath is new bioimage analysis software designed to meet the growing need for a user-fr

92 and recommendations for experimentalists and software developers of what constitutes a solid lipid id

93 istical analysis, Ingenuity pathway analysis software, DIANALAB database and published literature, th

94 caspo is open-source software distributed under the GPLv3 license.

95 ations using advanced Multiphysics modelling software (e.g. Finite Element Method (FEM) etc.) and hom

96 ll reduce the need for using solvent masking software (e.g. SQUEEZE) to obtain acceptable crystal str

97 tion phases (SRa) were analyzed by dedicated software (EchoPAC, GE) and compared in terms of age, sex

98 of N-glycosylation efficiency using the SAS software, employing the 120 sequences studied as a train

99 The SCOPA and META-SCOPA software enable discovery and dissection of multiple phe

100 The software enabled time-lapse imaging and the use of tempo

101 The DeepPhe software enables automated extraction of detailed phenot

102 Volume scans were imported into software enabling grading of areas in B-scans and comput

103 4microm feed motion), and customized control software, enabling modular experimentation packages and

104 ys virtualization to provide a comprehensive software environment preconfigured with hundreds of soft

105 P-MartCancer is an interactive web-based software environment that enables statistical analyses o

106 We present methodology and software for efficient interactive optimization of spin

107 ficant advancements in detector hardware and software for multiwavelength analytical ultracentrifugat

108 gle particle cryo-EM and present open-source software for rapidly assessing orientation distributions

109 a useful resource for future development of software for RNA-Seq analysis.

110 We present GuideScan software for the design of CRISPR guide RNA libraries th

111 we developed LipidHunter, a new open source software for the high-throughput identification of phosp

112 We have made free open-source software for the proposed method and the corresponding t

113 cent years, many advances in CT hardware and software, for example, automatic exposure control tools

114 In this work, we describe software Formularity with a user-friendly interface for

115 nts and is embedded within a general-purpose software framework for management of next-generation seq

116 Using semiautomated LN segmentation software (Fraunhofer MEVIS), we measured node volume and

117 substitute grafting were analyzed using the software from the picture archival and communication sys

118 her than those obtained from the widely used software GCTA and 25% (s.d. 2%) higher than those from t

119 a lack of high throughput glycan sequencing software, glycan spectra are predominantly sequenced man

120 LGE extent was analyzed with the software GT Volume.

121 PRINCESS leverages Software Guard Extensions (SGX) and hardware for trustwo

122 ts for four popular local ancestry inference software: HAPMIX, LAMP, LAMP-LD, and ELAI.

123 Researchers must pay close attention to the software-hardware interface to ensure that the three mai

124 Software has only been tested on Windows machines.

125 Improvements in software have made the multitype events model easier to

126 in MACAU, freely available at www.xzlab.org/software.html.

127 d nCPCs, and the literature-based networking software identified specific pathways affected by the se

128 Additionally, the software identifies a cluster of 9 multilocus sequence t

129 es, all built around Microsoft's PivotViewer software (iii) new data visualization tools and (iv) the

130 ked eye and analysed using an image analysis software (ImageJ) for the purpose of quantitative detect

131 We provide an open-source software implementation of this framework called Surviva

132 SurvivalGWAS_SV is an easy to use software implemented using C# and run on Linux, Mac OS X

133 The software implements "reverse regression" methodology, wh

134 cy and precision compared with other similar software in detecting SVs.

135 ents were corroborated by at least one other software in positive mode and 98% in negative ion mode.

136 lateral nucleus and traced using Neurolucida software in their entirety.

137 provides both a novel on-line resource and a software infrastructure that promotes and extends public

138 Availability: Software is available at compbio.cs.brown.edu/software.

139 As yet, no open source software is available for the automatic gating of two ch

140 iginate in academic labs, persistence of the software is compromised when developers graduate, fundin

141 Current spliced alignment software is designed to analyze each sample separately.

142 The software is distributed under the GNU General Public Lic

143 The software is distributed under the MIT License and is acc

144 The software is implemented in Perl.

145 The software is implemented using Python, MongoDB, HTML/Java

146 eration of MACS is described, and automation software is provided to integrate MACS control with imag

147 I, 0.41-0.55) and similar to OCT progression software (kappa, 0.52; 95% CI, 0.44-0.59).

148 Software libraries with a claim to be both domain-facing

149 We introduce an open-source software, LIQUID, for semi-automated processing and visu

150 tially, the computational speed of alignment softwares must be improved.

151 easurements, we have developed multiplatform software named TREND to Track Equilibrium and Nonequilib

152 Among others, the software offers several tracking strategies to cover a w

153 nomes and removes the need for pipelines and software on personal hardware.

154 verage and outperforms the fastest available software on simulated data on accuracy and often on spee

155 abecular bone score was measured by specific software on the dual-energy x-ray absorptiometry scans o

156 sing various computer programs and available software, or manually.

157 72] to 0.87 [0.79-0.96]) and similar for OCT software (overall kappa [95% CI], 0.59 [0.46-0.71] to 0.

158 ent was substantial to almost perfect for VF software (overall kappa [95% CI], 0.59 [0.46-0.72] to 0.

159 The method introduced here is available as a software package and web server (spectrus.sissa.it/spect

160 Our software package biMM is a computationally efficient imp

161 ase of 2,572 dividing cells, and developed a software package called ECdetect to conduct unbiased, in

162 iMosflm/MOSFLM is a software package designed to achieve this goal.

163 MSMBuilder is a software package for building statistical models of high

164 lysis in R) is an open-source R/Bioconductor software package for gene set analysis (GSA).

165 e, we describe NGSCheckMate, a user-friendly software package for verifying sample identities from FA

166 but MOST-Visualization, an extension of the software package MOST (Metabolic Optimization and Simula

167 automated clustering approach and associated software package that addresses these problems and provi

168 a robust computational method and companion software package that supports parameter adjustment and

169 quality metrics, provide a freely available software package to compute them, and demonstrate that i

170 The MultiAssayExperiment software package, implemented in R and leveraging Biocon

171 re assembled and analyzed using a commercial software package.

172 een incorporated into our open-source ALFRED software package.

173 freely available as part of the RNAstructure software package.

174 is now provided as part of the RNAstructure software package.

175 d analysed using a qualitative data analysis software package.

176 Here, we present an advanced version of the software package: CalQuo (2) .

177 based classification pipeline, using a novel software package: DECARD.

178 data suggest that these glaucoma progression software packages are insufficient to obtain high intero

179 plications of NMR, the number and variety of software packages for processing and analyzing NMR data

180 Even though a variety of software packages is available for different aspects of

181 Because the majority of software packages originate in academic labs, persistenc

182 However, most of these existing software packages require specific formatted input files

183 is built from existing open-source, modular software packages that are regularly updated and commonl

184 We compare the new algorithms to two popular software packages XCMS and MZmine 2 and present evidence

185 e environment preconfigured with hundreds of software packages, available as a downloadable virtual m

186 ancestry software among different supported software packages, mainly focusing on inference accuracy

187 h labs relying on dozens, if not hundreds of software packages.

188 However traditional software parallelization techniques (threads, message pa

189 in association network analysis using STRING software permitted to build an interactomic map of all d

190 We developed Yet Another RNA Normalization software pipeline (YARN), that includes quality control

191 ISEScan is a highly sensitive software pipeline based on profile hidden Markov models

192 Here we present AFS, a software pipeline for quantification of species composit

193 Toward this goal, we developed a software pipeline named digit that implements a novel me

194 imab, using a single, commercially available software platform both for data acquisition and evaluati

195 istant has been integrated into 3D Slicer, a software platform for the analysis and visualization of

196 d 130-fold speedup over the state-of-the-art software pre-alignment techniques, Adjacency Filter and

197 Functionality of the software program and its performance is described.

198 uencing technique and develop an open-source software program called SpliceHunter to characterize the

199 We provide a web application and open-source software program implementing our simulation framework,

200 This software program quantitatively assesses the progenitor

201 sion or treatment changes suggests that both software programs used in isolation are insufficient for

202 trate how to fit such models in a variety of software programs.

203 ntricle was segmented with standard clinical software (quantitative perfusion SPECT) by 2 experts, ad

204 Our software relies on machine learning to devise robust alg

205 We propose that the software's reliability, flexibility, and ability to iden

206 ent and implementation of publicly available software, SAILOR, identified 7361 A-to-I editing events

207 nt challenges but also provide a roadmap for software selection to answer specific research questions

208 microvasculature was measured using computer software (Singapore I Vessel Analyzer, SIVA version 3.0,

209 ly as good as, or better than, other leading software solutions in the accuracy, yield and missing da

210 rocessing and analyzing data using dedicated software solutions, such as Progenesis QI (Nonlinear Dyn

211 ), which can convert standardized files into software-specific input file formats as well as standard

212 Statistical parametric mapping software (SPM5) was used to identify all hypo- and hyper

213 Using the software STAN, a material flow system comprising all rel

214 Verdant is a web-based software suite and database built to take advantage a no

215 ntration; and (2) FreeSurfer (an open source software suite) automated segmentation, which estimates

216 The presented tools are part of the Rosetta software suite, available at www.rosettacommons.org .

217 mp_lipid_acc is part of the Rosetta software suite, available at www.rosettacommons.org .

218 rams or preferably through the use of dosing software supplemented by therapeutic drug monitoring dat

219 The software system is robust, free, and will allow research

220 Here we introduce mzAccess, a software system that provides interactive, online access

221 ased Prediction of Aneurysm Rupture Risk), a software system to facilitate the analysis of AAA using

222 The developed predictor software, termed NT-AcPredictor, accurately predicted th

223 We developed software that automatically analyzes the sensor data to

224 However, methodology and software that can efficiently handle the scale and compl

225 We implemented our model in Enrich2, software that can empower researchers analyzing deep mut

226 ) the release of a new version of the ETHNOS software that catalyzes development curation of national

227 explores how to devise and implement quantum software that could enable machine learning that is fast

228 postar, novel vendor-neutral high-throughput software that effectively supports both targeted and unt

229 FQC is software that facilitates quality control of FASTQ files

230 nsights exist regarding the true accuracy of software that infer sex from genotype array data.

231 ld (CANARY) is quantitative imaging analysis software that predicts the histopathological classificat

232 Here we report ichorCNA, software that quantifies tumor content in cfDNA from 0.1

233 sing comprehensive meta-analysis statistical software that took into account sample size and differen

234 cs-oriented genome browser, based on JBrowse software, that contains a complete inventory of populati

235 Software to analyze concentration is readily available,

236 lyze concentration is readily available, but software to analyze turnover is lacking.

237 acilitated by user friendly image-processing software to automatically detect and annotate band sizes

238 a, we modified the UVnovo de novo sequencing software to automatically learn from and interpret fragm

239 lessly transmits the data to the application software to be displayed on the screen.

240 ojects Docker and rkt frameworks, that allow software to be installed and executed under an isolated

241 ed statistical parametric mapping (SPM V.12) software to compare groups and investigate voxelwise cor

242 terface and then used computational modeling software to generate models of the KCa3.1 and KCa2.3 CaM

243 We also provide the necessary software to implement stream processing to visualize ima

244 with swept-source OCT-A and a semiautomated software to measure the capillary density index (CDI) an

245 Software to predict non-canonical base pairs and pairing

246 re pipelines which use independent pieces of software to predict the presence of superenhancers from

247 The availability of robust and user-friendly software to process the collected X-ray diffraction imag

248 sessments of FA from solid-meal GES; develop software to quantify GES IMD; and correlate symptoms of

249 We also compared our software to three currently available Python libraries f

250 s gap, quantum computers require appropriate software to translate and optimize applications (toolflo

251 gorithmic technique, implemented entirely in software, to improve performance over state-of-the-art a

252 onally efficient, flexible and user-friendly software tool allowing rapid identification of rare vari

253 Organization of large-scale data (PLATO), a software tool equipped to handle multi-omic data for hun

254 The Omics Dashboard is a software tool for interactive exploration and analysis o

255 We developed TopMG, a mass graph-based software tool for proteoform identification by top-down

256 The software tool matches product and neutral loss signals o

257 s and we provide a method and an easy-to-use software tool that can be effectively applied to this ch

258 inding sites, there is not yet an integrated software tool that processes automatically algebra combi

259 When used in conjunction with a software tool that we developed that converts an arbitra

260 An interactive and freely available software tool was developed to allow continued analyses

261 Here we describe a new software tool, RNAModMapper (RAMM), to assist in the int

262 We propose a novel method and software tool, Strawberry, for transcript reconstruction

263 Using a customized software tool, we apply Monte Carlo simulation to system

264 tage were administered via an online survery software tool.

265 -mer Analysis Toolkit (KAT): a multi-purpose software toolkit for reference-free quality control (QC)

266 PANTHER software tools allow users to classify new protein seque

267 User-friendly software tools are still lacking.

268 Though there are a number of software tools available for processing repertoire data

269 Cheminformatics-based software tools can predict the molecular structure of tr

270 We describe a suite of software tools for identifying possible functional chang

271 Several recently developed automated software tools promise to standardize the analysis and i

272 Software tools such as lobSTR and STR-FM have been devel

273 We review five software tools that do not require programming expertise

274 DAPAR and ProStaR are software tools to perform the statistical analysis of la

275 Many software tools using minimizers employ ad hoc variations

276 r-randomized, multiple-crossover trial using software tools within the electronic health record to co

277 ires an automated data analysis by dedicated software tools, but applying scoring procedures with sta

278 tion of bioinformatics resources (databases, software tools, training materials etc.) makes it diffic

279 se, and hard to incorporate into third-party software tools.

280 high-level analyses were performed by using software tools.

281 bilities are shaped by culturally dependent "software updates." The role of sociocultural inputs in t

282 e randomly assigned (1:1), via remote survey software using computer-generated random numbers, to rec

283 A typical test involves the user loading the software, using the stylus to dispense an enzymatic pell

284 and total retinol were estimated in WinSAAM software.VA supplementation redirected the flow of CM-RE

285 field progression was assessed by PROGRESSOR software version 3.7 (Medisoft, Leeds, United Kingdom) a

286 IBM SPSS statistical software (version 22) was used to perform correlation an

287 Software was developed to streamline data extraction, pr

288 The DnaFabric software was extended to generate and export this nucleu

289 glaucoma specialists with the VF progression software was moderate (kappa, 0.48; 95% CI, 0.41-0.55) a

290 Second, the commercial software was used to assemble paired-end data, and resol

291 For each subject, commercially available software was used to quantify the relative metabolism of

292 Software was used to semiautomatically delineate the ana

293 By modifying KinTek Explorer software, we present a new general method for globally f

294 To demonstrate the utility of our software, we subjected nearly 200 single human B cells t

295 In this work, novel hardware and software were developed to automate the microraft array

296 d spinal segmentation and fracture detection software were then used to analyze the study set.

297 ation was developed employing an open source software, which established a wireless connectivity with

298 ormans and C. gattii were compared by MaxEnt software with several bioclimatic conditions as well as

299 The accompanying software (with available source code) processes data ori

300 yze their own data with TIGERi could use the software without any command line experience.