コーパス検索結果 (１語後でソート)
通し番号をクリックするとPubMedの該当ページを表示します
1 teractions, as well as conserved interfacial solvent accessible surface area.
2 face than a random surface patch of the same solvent accessible surface area.
3 ondary structure, backbone torsion angle and solvent accessible surface area.
4 he DOCK score, empirical scoring, and buried solvent accessible surface area.
5 minant of triplex binding free energy is the solvent accessible surface area.
6 ffinities based on simple parametrization of solvent-accessible surface area.
7 either fluorine content or changes in apolar solvent-accessible surface area.
8 similarly, correlates with changes in apolar solvent-accessible surface area.
9 lates well with calculated changes in apolar solvent-accessible surface area.
10 32-0.59 kJ/mol per 100 A(2) of newly exposed solvent-accessible surface area.
11 a protruding hydrophobic stalk with a large solvent-accessible surface area.
12 ithout altering its structural properties or solvent-accessible surface area.
13 ury 627 A2 that accounts for 7% of the total solvent-accessible surface area.
14 ude the change in total Coulombic energy and solvent-accessible surface area.
15 ng trajectories, the contour length, and the solvent-accessible surface area.
16 an approximately 30 % increase in the native solvent-accessible surface area.
17 ucture-based energy function parametrized to solvent accessible surface areas.
18 in local backbone conformations and relative solvent-accessible surface areas.
19 to surface side chains that bury the largest solvent-accessible surface area after forming the comple
20 h by crystal structure-based calculations of solvent-accessible surface area and by hydrogen-deuteriu
21 Based on these discoveries, the amino acid solvent-accessible surface area and dihedral angles were
22 dimer in solution that maximizes the buried solvent-accessible surface area and intermolecular conta
23 ces of the conventional MM/Poisson-Boltzmann solvent-accessible surface area and MM/generalized Born
25 ns orient the peptides so as to minimize the solvent accessible surface area, and the dimer structure
26 ding to approximately 1000A(2) of additional solvent-accessible surface area, and the N termini of th
27 on of sizes of hydrophobic patches and total solvent-accessible surface area, and the prediction of s
28 of chemical denaturation rely on changes in solvent-accessible surface area, and there is no notable
29 n increased antibody paratope net charge and solvent-accessible surface area; and (iv) public heavy-c
30 of motifs such as sequence conservation and solvent accessible surface area are also displayed in th
31 upon changes that occur in polar and apolar solvent-accessible surface area are in very good agreeme
33 ults in variations of helical parameters and solvent-accessible surface area around the major and min
34 odels relate the magnitude of DeltaCp to the solvent accessible surface area (ASA) of the molecule.
35 characterized by several measures including solvent accessible surface area (ASA), residue depth (RD
36 HY values of rare gases are proportional to solvent-accessible surface area (ASA), whereas the HY va
37 ave permitted the optimization of the set of solvent-accessible surface areas (ASA) for all amino aci
38 he solvation energies using estimates of the solvent-accessible surface areas (ASA) obtained from har
39 of motifs such as conservation strength and solvent accessible surface area at each position are vis
40 present a new method for the calculation of solvent accessible surface areas at the atomic and resid
41 as witnessed particularly in the analysis of solvent-accessible surface areas at the higher temperatu
42 in the presence of either MoaD subunit, the solvent accessible surface area buried upon formation of
43 e found to correlate with the alterations in solvent-accessible surface area calculated from availabl
44 peptide oxidation levels with the values of solvent-accessible surface area calculated from molecula
45 ent accessible surface area/generalized Born solvent accessible surface area calculations led to the
50 r the complex are correlated with calculated solvent accessible surface area changes and indicate hyd
51 es such as radius of gyration, rms distance, solvent-accessible surface area, contact order, and pote
52 he desolvation-characterizing changes in the solvent-accessible surface areas, correlated with experi
53 by the user, ANCHOR calculates the change in solvent accessible surface area (DeltaSASA) upon binding
55 face area, and there is no notable change in solvent-accessible surface area during the formation of
56 ture content, side-chain and water contacts, solvent accessible surface area, etc.) were observed for
57 tes for cases where a sizeable difference in solvent-accessible surface area exists between the state
58 es shows that only those hydrogen atoms with solvent accessible surface area exposure > or = 8.0 A(2)
59 urea m-values, which report on the change in solvent accessible surface area for unfolding, to probe
60 he hydrophilic and hydrophobic components of solvent-accessible surface area for several ideal confor
61 ith the molecular mechanic-Poisson-Boltzmann solvent accessible surface area/generalized Born solvent
62 force field along with the generalized Born/solvent-accessible surface area implicit solvent model,
63 plot) is identical to the fraction of buried solvent accessible surface area in the structures of the
64 at capacity indicate a large decrease of the solvent-accessible surface area in SelB, amounting to 43
65 in the lattice which both buried significant solvent-accessible surface area in their interface and c
66 ame peptide/MHC bury very similar amounts of solvent-accessible surface area in their transition stat
67 se in the major groove, and to calculate the solvent-accessible surface areas in each groove separate
68 inding-induced changes in nonpolar and polar solvent-accessible surface areas (in square angstroms),
69 three-dimensional structure are buried (<50% solvent-accessible surface area) in the native state.
71 s to accurately measure the absolute average solvent accessible surface area (<SASA>) of amino acid s
72 dilute protein systems; however, the popular solvent-accessible surface area model was shown to be in
73 , we address this issue by supplementing the solvent-accessible surface area model with additional vo
76 ressed by the PF values agreed well with the solvent accessible surface areas obtained from the X-ray
79 tagenesis of 97 residues covering 53% of the solvent accessible surface area of the enzyme identifies
82 pitope (19 nonconsecutive amino acids with a solvent-accessible surface area of >2,000 A2) of an HIV-
86 ttern is a measure of the local variation in solvent-accessible surface area of duplex DNA, and thus
87 Molecular modeling was used to calculate the solvent-accessible surface area of FITC and FMP bound to
91 ution of cholesteryl oleate molecules to the solvent-accessible surface area of the entire ms-HDL par
95 and truncated inhibitors correlated with the solvent-accessible surface area of their N-terminal regi
96 culated the molecular volumes as well as the solvent-accessible surface areas of the constituent char
97 predicted on the basis of the changes in the solvent-accessible surface areas of the enzyme and ligan
98 ng enthalpies calculated from changes in the solvent-accessible surface areas of the galectin binding
99 e, indicating that the packing and change in solvent-accessible surface area on unfolding are not unu
100 its lower value demonstrates an increase in solvent-accessible surface area over that of native Cyt
101 sity, protein-protein contact distributions, solvent accessible surface area, porosity, and order, an
102 of the extent of oxidative modification with solvent accessible surface area reveals the method succe
104 olecular dynamics simulation to quantify the solvent accessible surface area (SASA) of beta1 strand r
105 binding kinetics, binding interactions, the solvent accessible surface area (SASA) of the ligands, a
107 der Waals (alpha), electrostatic (beta), and solvent accessible surface area (SASA, gamma) terms.
108 an approaching protein partner, and (iii) a solvent-accessible surface area term that is used to des
109 unbound inhibitors solvated in water plus a solvent-accessible surface area term, as an index for ca
110 bility and structure-based identification of solvent-accessible surface area, the latter does not dis
111 s to solvation energy, and calculates scaled solvent-accessible surface area to account for hydrophob
112 s of candidate complexes based on changes in solvent-accessible surface areas upon binding support th
113 computational alanine scanning and change in solvent-accessible surface area values for every interfa
114 a factor relating molecular surface area to solvent-accessible surface area, we obtain 24 cal/mol A(
115 on continuum methods (Poisson-Boltzmann and solvent accessible surface area) were performed to estim
116 (0), suggests that the collapsed state has a solvent accessible surface area which is considerably in
117 s somewhat smaller than the more traditional solvent-accessible surface area, which is the area trans
118 uctures, revealing a positive correlation of solvent-accessible surface area with quenching but not a
119 requently, it is assumed to be linear in the solvent-accessible surface area, with a positive surface
WebLSDに未収録の専門用語（用法）は "新規対訳" から投稿できます。