コーパス検索結果 (1語後でソート)
通し番号をクリックするとPubMedの該当ページを表示します
1 the binding to the collagen triple-helix are solvent exposed.
2 C-terminal 40 residues remain disordered and solvent exposed.
3 ion buffer where the peptides are completely solvent exposed.
4 th the N- and C-termini are unstructured and solvent exposed.
5 sic amino acid residues, and predicted to be solvent exposed.
6 the core in both SIV and HIV Nef were highly solvent exposed.
7 change data reveal that the center of TM3 is solvent exposed.
8 bserved for Fd, where the [Fe4S4] cluster is solvent exposed.
9 g conformations in which the nucleotides are solvent exposed.
10 polyglutamine (polyQ) segment disordered and solvent-exposed.
11 ent, while the hydrocarbon tail is partially solvent-exposed.
12 UNAG, and has the Cys115-terreic acid adduct solvent-exposed.
13 from the N terminus appear unstructured and solvent-exposed.
14 erminal portion of the fusion peptide can be solvent-exposed.
15 the subunit interface, moves from buried to solvent-exposed.
16 becomes disordered and the heme ring becomes solvent-exposed.
17 tacts with the enzyme, and the hydroxyls are solvent-exposed.
18 rophobic pocket while the helix and loop are solvent-exposed.
19 (residues 141-149) become substantially less solvent-exposed.
20 he hydrophobic core while, in ReAz108W it is solvent-exposed.
21 ally, the adenine ring is substantially more solvent-exposed, a result that could be explained by the
22 iking feature of the structure is an unusual solvent exposed acidic pocket formed between the peptide
24 Glu69-containing molecule, revealed a unique solvent-exposed acidic pocket that includes betaGlu69 an
25 ly polymerase, which has a more spacious and solvent-exposed active site than replicative and repair
26 is HisG has been solved and reveals a large, solvent-exposed active site with subsites for ATP and PR
27 ve NADP(H) and (hydroxy)ornithine bound in a solvent-exposed active site, providing structural eviden
32 tates of the spin-label were resolved at the solvent-exposed alpha-helical site, at residue 28; these
34 differential exchange rate constant for each solvent-exposed amide proton that is not hydrogen bonded
37 Conversely, the THA group in fact remains solvent exposed and does not disrupt base stacking in RA
38 segment in alpha-synuclein, NAC(8-18), in a solvent exposed and extended conformation that can form
39 in the GRK2 large lobe whose side chains are solvent exposed and facing the membrane were targeted fo
40 shown to be critical for K1's function, are solvent exposed and located on a convex surface, opposit
41 The aryl ring of benzimidazole is partially solvent exposed and only participates in van der Waals i
42 motif, whereas the C-terminal SUMO target is solvent exposed and situated in a typical consensus moti
44 , or an open conformation, with Gly-734 more solvent-exposed and accessible to the PFL-AE active site
45 ore, the structurally defined N-NO moiety is solvent-exposed and available to transfer NO to a partne
46 , the phosphoinositide head groups are fully solvent-exposed and complete the LBD fold by organizing
47 orylation, resulting in a more comprehensive solvent-exposed and conformationally dynamic enzyme.
48 The terminal ZL portion of the inhibitor is solvent-exposed and highly flexible, and is thus not inv
50 The altered residues in the polymerase are solvent-exposed and lie in regions that are adjacent to
51 at in each Bak dimer the N-termini are fully solvent-exposed and mobile, the core is highly structure
53 g the hypothesis that the thiol residues are solvent-exposed and not involved in disulfide bonds that
55 e it includes a poorly conserved sequence, a solvent-exposed and somewhat unstable helix and a mobile
56 he receptor, whereas its glutamate moiety is solvent-exposed and sticks out of the pocket entrance, a
58 ggesting that individual domains of hA3G are solvent-exposed and therefore may interact with other ma
59 EGCG, the Abeta(1-40) oligomers become less solvent exposed, and the beta-regions, which are involve
60 l group and first eight residues of Frq1 are solvent-exposed, and Ca2+ binds the second, third, and f
61 ever, the active site of PPIases is shallow, solvent-exposed, and well conserved between family membe
64 luster of positively charged residues in the solvent-exposed area outside of the adenine pocket adjac
65 d footprinting strategy was adopted to probe solvent-exposed aspartic and glutamic acid residues on t
66 vent-exposed surfaces of the FMO by labeling solvent-exposed aspartic and glutamic acid residues.
67 igand-binding sites is bonded to a different solvent-exposed Au atom, suggesting an associative mecha
68 module nor mutations altering access to the solvent-exposed axial copper coordination site significa
70 interactions between the sidechains of these solvent-exposed basic residues and the graphene surface
72 we uncovered a point mutation (Y456T) on the solvent-exposed beta-sheet surface that allowed this dom
73 termining region 3 (CDR3H) that folds into a solvent-exposed beta-strand "stalk" fused to a disulfide
76 e stronger ( approximately 4 Hz) than in the solvent exposed C-terminal AR ( approximately 2 Hz).
79 tructural model, including the presence of a solvent-exposed cavity within its transmembrane region.
80 ER server that suggests that MurJ contains a solvent-exposed cavity within the plane of the membrane.
82 with the displacement of iron atoms from the solvent-exposed cluster, suggesting that Cu(I) damages t
83 secondary structures, and to the presence of solvent-exposed clusters of negatively charged side-chai
84 ed that Rpe employs a ferrous iron atom as a solvent-exposed cofactor and that H(2)O(2) rapidly oxidi
85 , the FAD of T. thermophilus PRODH is highly solvent-exposed compared with PutA due to a 4-A shift of
86 ally possible for Tyr106 to isomerize from a solvent exposed configuration to a buried rotameric stat
87 emplating base, the B[a]P moiety is in a non-solvent exposed conformation stacked within the DNA heli
88 xide (DMSO), the adduct is able to move to a solvent-exposed conformation, which enables error-prone
92 ein as EDTA-metal complexes by introducing a solvent-exposed cysteine residue using site-directed mut
93 human protein also contains three additional solvent-exposed cysteine residues (C95, C173, C188) that
94 , the nanocapsid surface was modified with a solvent-exposed cysteine to conjugate monolayer protecte
96 in shape and electrostatics features of the solvent-exposed cytosolic receptor domains involved in t
97 ost of which are located in proximity to the solvent-exposed edge of the FMN cofactor along with othe
98 residues of recoverin at the N terminus are solvent-exposed, enabling the N-terminal myristoyl group
99 Trp-specific fluorescence, indicating a more solvent-exposed environment for the Trp residues in the
100 ix 3, helix 4, and helix 11 that move from a solvent-exposed environment to one that interacts extens
102 ydrophobic cavity upon ligand binding to the solvent exposed exterior of the LTP, facilitating proteo
103 on were overrepresented within the predicted solvent-exposed face of the LRR domain, although several
110 lulose III(I), which increased the number of solvent-exposed glucan chain hydrogen bonds with water b
111 n of Z (but not OG) is strongly preferred at solvent-exposed guanine nucleobases at duplex ends.
112 mutant (GB1) with various amino acids at the solvent exposed guest position 53 in the internal strand
113 two distinct ring binding modes, buried and solvent-exposed, have been observed by X-ray structure a
114 ozyme, each containing a single p-AcPhe at a solvent-exposed helix site; the mutants were expressed i
115 in unphosphorylated Noxa, consistent with a solvent-exposed helix/loop, but strongly constrained in
119 The determination of pKa values for the solvent-exposed histidine residues shows that the surfac
120 this interaction, 13-HODE was docked to the solvent exposed histidines of a 15-hLO-2 homology model
121 where a beta-strand distortion results in a solvent-exposed hydrophobic amino acid at residue 5.
122 ate) phases], including the involvement of a solvent-exposed hydrophobic cluster and another delocali
126 eptide substrates is necessary to complete a solvent-exposed hydrophobic pocket to form the catalytic
130 ture of helix alpha1 is characterized by two solvent-exposed hydrophobic residues, F46 and L50, sugge
131 of factors V and VIII, some or all of these solvent-exposed hydrophobic residues, Trp26, Leu28, Phe3
132 hormone-bound GR interact with two distinct, solvent-exposed hydrophobic sites in the Hsp90 C-termina
134 ges of Abeta40 and Abeta42 contain different solvent-exposed hydrophobic surfaces that are located at
135 l change, which was featured by an increased solvent-exposed hydrophobicity, while MsESAT-6 showed li
138 side chain, which is glycosylated in E2 and solvent exposed in other complexes, is slightly buried u
139 uctures show that Y272 is significantly more solvent exposed in the W290G variant but that W290F limi
140 myristoyl group attached to FCaBP is indeed solvent-exposed in both the Ca(2+)-free and Ca(2+)-bound
143 These include several residues that are solvent-exposed in the CPR crystal structure, indicating
144 as Asn-415 is buried by HCV1 and AP33, it is solvent-exposed in the HC33.1-E2(412-423) complex, such
147 inaccessible in the native state but become solvent-exposed in unfolded state, thus enabling GroEL t
148 hed myristoyl group at the N terminus may be solvent-exposed, in contrast to the highly sequestered m
149 f all xylose residues in the active site are solvent exposed, indicating that arabinose substituents
150 residues, only Trp-105, containing the most solvent-exposed indole moiety in MEDI-493 and residing i
151 These singularities, called dehydrons, are solvent-exposed intramolecular hydrogen bonds that may b
152 rge portion of the backbone amide groups are solvent-exposed leading to fast hydrogen exchange and ca
153 is closed, a region of the binding pocket is solvent-exposed, leading to the hypothesis that it may a
157 ons in sequence at just three positions in a solvent-exposed loop greatly alter the extent of IB form
158 cid was extrapolated and incorporated into a solvent-exposed loop of a protein domain; the protein ex
159 ed that amino acids 121 to 124, located on a solvent-exposed loop of the protein, are important for M
160 anine mutagenesis of structurally determined solvent-exposed loop residues of the IGF-II-binding site
161 domains have the ferredoxin-like fold and a solvent-exposed loop with a MXCXXC motif that can bind C
164 ay library of Fn3 was created in which three solvent-exposed loops were diversified in terms of amino
165 t peptide with four disulfide bonds and four solvent-exposed loops, as a scaffold for engineering pep
166 We illustrate this new strategy by labeling solvent-exposed lysine residues with commercially availa
168 benzoquinone (NAC-BQ) preferentially bind to solvent-exposed lysine-rich regions within cytochrome c.
170 rmer, the carcinogenic moiety resides in the solvent-exposed major groove throughout the replication/
171 n peroxide-treated sample, in contrast, four solvent-exposed Met residues in the Fc portion were comp
172 The rate constants and activation energy of solvent exposed methionines in protein and peptide were
173 tion was observed for the oxidation rates of solvent-exposed methionines with any thermodynamic param
174 dule forming a foothold on the virus and the solvent-exposed module able to adapt to bind to a variet
177 , where X1,2 not equal proline) in flexible, solvent-exposed motifs; however, several native glycopro
179 p predicted a mechanical intermediate with a solvent-exposed N terminus spanning the A and B beta-str
180 ic Abeta1-42 oligomers had more flexible and solvent-exposed N-termini than Abeta1-40 oligomers.
181 a3-40/42 had significantly more flexible and solvent-exposed N-termini than Abeta1-40/42 conformation
184 ns suggest that the thiol groups present are solvent-exposed on a single protein surface and are too
185 tures include elongated beta-sheets that are solvent-exposed on both faces and the lack of a canonica
187 ntacts also place the NAC(8-18) segment in a solvent exposed orientation, a finding in contrast to th
188 , AlkD captures the extrahelical lesion in a solvent-exposed orientation, providing an illustration f
190 esponding to the dimer interface became more solvent exposed over time at 3 degrees C; unexpectedly,
192 s and that fibrillization is promoted by two solvent-exposed patches, which are also involved in reco
197 bonds that can form in the membrane and the solvent-exposed polar surface area correlate more poorly
199 eeply buried position in the dark state to a solvent-exposed position in the light excited state.
200 ups that are gradually pulled from a distal, solvent-exposed position into the flat, bowl-shaped S2'
202 result in semiconservative substitutions at solvent-exposed positions in the folded conformation and
203 esigned with randomized amino acids at seven solvent-exposed positions was developed from 1.6 x 10(9)
204 examined alpha --> beta substitution at four solvent-exposed positions, Asn19, Trp23, Gln26 and Lys30
205 2 of the V(H) exhibited frequent mutation in solvent-exposed positions, but conservation of common st
210 Molecular dynamics simulations show that solvent-exposed proteins (S15 and S17) tend to adopt mor
212 an incompletely formed substrate channel and solvent-exposed pyridoxal 5'-phosphate cofactor and prov
213 en the coupling constants for the buried and solvent-exposed radical are primarily caused by variatio
214 e compared to those of a previously studied, solvent-exposed radical at position 108 to identify sign
215 ed by approximately 7 cm(-1) relative to the solvent-exposed radical, and large changes in intensity
217 the structure also reveals the presence of a solvent-exposed redox-sensitive disulphide bridge, uniqu
218 to engineer structural modifications in the solvent-exposed region of the ATP-binding site that sign
219 sters, we explored the chemical space in the solvent-exposed region of the enzyme catalytic binding p
220 he apopeptide, and that C133 is located in a solvent-exposed region with no definite secondary struct
221 s: while sequons were positively selected in solvent exposed regions, they were almost completely eli
222 eptide and PPACK, generating an enzyme whose solvent-exposed regions are even further stabilized from
227 ow that while the majority of Nef was highly solvent exposed, regions outside the core may have struc
232 8 mutants of the SARS-CoV nsp1, targeting 62 solvent exposed residues out of the 180 amino acid prote
233 xtensive hydrogen-bonding network with three solvent exposed residues, linking the catalytic Fe(II) t
235 quantify the number of lipid-correlated and solvent-exposed residues by amino acid type, which furth
237 Val-131, Leu-132, and Leu-135) interact with solvent-exposed residues in the Frq1 C-terminal pocket (
238 -160, Val-161, Met-165, and Met-167) contact solvent-exposed residues in the Frq1 N-terminal pocket (
239 ine GRK1 as a guide, we generated mutants of solvent-exposed residues in the GRK1 kinase domain that
240 osine-glutamine-phenylalanine (YQF) triad of solvent-exposed residues that are displayed on the beta-
241 26 mutants wherein clusters of 1-5 putative solvent-exposed residues were changed to alanine, ultima
243 rface, featuring key charged and hydrophobic solvent-exposed residues, at the membrane-distal tip of
244 integrated alleles that target conserved and solvent-exposed residues, we identified surfaces on p35/
245 structural distortions occur: distortions in solvent-exposed seed and 3'-end regions are less likely
246 reased sequence coverage and localization of solvent-exposed segments for mass-analyzed solution-phas
247 tify multiple structural features within the solvent-exposed SF region of apoA-I of nascent HDL essen
248 5 unit, respectively, than commonly seen for solvent-exposed side chains in water-soluble proteins, i
255 latter two phenotypes lie in two overlapping solvent-exposed sites adjacent to the sugar-binding clef
257 and are generally considered as prototypical solvent-exposed sites on the surfaces of alpha-helices.
258 n bonding interactions with the enzyme and a solvent exposed six-membered ring, consistent with its p
259 lar-pseudolamellar organization, and (3) the solvent-exposed Solar Flare loops, proposed sites of int
260 th in silico docking calculations identified solvent-exposed STAS residues involved in nucleotide bin
264 trained TCR docking mode, an optimal peptide solvent exposed surface leading to an optimal complement
266 f nine individual sites, each located on the solvent exposed surface of the protein where structural
267 The plot of free energy against the apparent solvent-exposed surface area is given for linear alkanes
268 to each other, differing primarily in their solvent-exposed surface areas in a manner accounting for
270 of hydroxyl radicals to covalently label the solvent-exposed surface of proteins has been shown to be
272 dues ( approximately 75%) are located on the solvent-exposed surface of the complex, a number of buri
273 residues (81%) are located on the oxygenated solvent-exposed surface of the complex, several residues
274 ns have been introduced incrementally on the solvent-exposed surface of the main alpha-helix (residue
275 tal structure of ATX suggests a role for the solvent-exposed surface of the N-terminal tandem somatom
277 syndrome missense mutations map to a common solvent-exposed surface that is not expected to alter en
278 sidues were predicted to cluster on a common solvent-exposed surface, suggesting a model in which the
281 ionizable amino acid residues present on the solvent-exposed surfaces of proteins, the protein charge
282 a mass spectrometry-based method that probes solvent-exposed surfaces of the FMO by labeling solvent-
283 the chemical equivalence of the protons of a solvent-exposed tert-butyl group from Tby, the singlet r
284 irst, the central region of (CAG)(8) is more solvent-exposed than single-stranded DNA, which suggests
285 ince this strategy leaves the alkylated base solvent exposed, the means to achieve enzymatic cleavage
286 When the cyanylated cysteine side chain is solvent-exposed throughout the structural transition, it
291 in docking of the short helix III remaining solvent-exposed until after the rate-limiting transition
294 nd is anchored at both of its ends, with the solvent-exposed Watson-Crick edges of stacked bases 2 to
295 no ligands, and the active site is open and solvent-exposed when compared to structures of similar e
296 riments showed that the 2F5 epitope was more solvent exposed, whereas the 4E10 epitope was immersed i
298 vicinity of the loop, the bases become more solvent exposed, which suggests that the instability ass
299 (AppA1-126) reveals that Trp104 is partially solvent exposed while a BLUF domain containing a slightl
WebLSDに未収録の専門用語(用法)は "新規対訳" から投稿できます。