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1 nd Gli2 to transactivate Myf5 in the epaxial somite.
2  required for Myf5 expression in the epaxial somite.
3 on in the anterior compartment of the future somite.
4 l crest cell migration to the center of each somite.
5  tissues initiate differentiation within the somite.
6 presumptive limb myoblasts emigrate from the somite.
7 rapid morphogenetic movements in the amniote somite.
8  to mutually repress each other in the mouse somite.
9 thus full epithelialization of the posterior somite.
10 ut differentiate prematurely adjacent to the somite.
11 sternal precursors do not originate from the somites.
12 rated embryonic mesodermal structures called somites.
13 a mechanism to specify posterior identity of somites.
14  expression of medium/long Vegfa isoforms in somites.
15 streams, or stall shortly after entering the somites.
16  derivatives, this enhancer is not active in somites.
17 are held back in order to give rise to later somites.
18 er, these mutants are able to form organized somites.
19  embryo's posterior body, including the tail somites.
20 ors results in complete absence of posterior somites.
21 s associated with an increased cell death in somites.
22 n ceased after the production of about 15-20 somites.
23 nd distal at 4 somites, and distal only at 6 somites.
24  the protein level of phosphorylated p38a in somites.
25  are only able to form roughly half of their somites.
26 ationship of these two regulators in amniote somites.
27 its the expression of cardiac markers in the somites.
28  the muscles for both systems arise from the somites.
29 romotes myotomal extension directly from the somites.
30 al vertebrae, and reduced number of ribs and somites.
31 ardiac progenitors and cardiomyocytes in the somites.
32 ules but to allow expression in the adjacent somites.
33 ogenitors expressing Pax3 are missing in the somites.
34 a dorsal, hollow nerve cord, a notochord and somites.
35 h the lateral plate mesoderm and also in the somites.
36 gmental de-adhesion and individualization of somites.
37 f the vertebrate embryo's body segments, the somites.
38 o expressed in mesodermal tissues, including somites.
39  mutants exhibited more severe phenotypes in somites.
40 ntial progenitors that normally give rise to somites.
41 oevolutionary diversity in limbs, digits and somites.
42  cells oscillate until they incorporate into somites.
43 egments into bilateral tissue blocks, called somites.
44 neck arise from Pax3-expressing cells in the somites.
45 1(+/+) and Tbx1(-/-) embryos at stages E9.5 (somites 20-25) and E10.5 (somites 30-35).
46 os at stages E9.5 (somites 20-25) and E10.5 (somites 30-35).
47     This allele causes dominant skeletal and somite abnormalities that are distinct from those seen i
48                  The formation of reiterated somites along the vertebrate body axis is controlled by
49 ate and in vasculogenic regions of the avian somite and are able to promote a vascular endothelial fa
50 opy and by immuno-histochemical detection of somite and neural crest marker proteins.
51                             We show that the somite and sclerotome are specified appropriately, the t
52 ed by canonical Wnt signaling in the epaxial somite and second branchial arch, but not in the limb or
53 rsors migrate across the ventral face of the somite and that junctional adhesion molecules (JAMs) med
54 n (Mb) and Cb by Wnt1 occurs between the one-somite and the six- to eight-somite stages and is solely
55 tures are homologous across vertebrates, how somite and vertebral patterning are connected, and the d
56 al space overlying the dorsal surface of the somites and contact the ectoderm.
57 mbryonic phenotype (head, pectoral fin buds, somites and fin fold).
58 from the hypaxial dermomyotome of limb level somites and migrate into the limb bud where they form th
59 ion by miR-206 and miR-133 in the developing somites and miR-124 in the developing central nervous sy
60 d in ectopic trunk expression extending into somites and neuroectoderm.
61 nt with the shared origin of spinal cord and somites and the distinct ontogeny of the anterior and po
62 6, which drives the VEGFA expression in both somites and the DLP, sit at the top of the adult haemang
63 rafish mutants; (b) the delayed formation of somites and the formation of 'salt and pepper' patterns
64 in the spinal cord, hypothalamus, pituitary, somites and upper jaw, but that Boc might negatively reg
65                     The timing of notochord, somite, and neural development was analyzed in the embry
66 ormation, was upregulated in mutant cervical somites, and conditional ablation of ectodermal Tbx3 exp
67  role in segmental patterning, alongside the somites, and contributes to mineralization.
68  the outflow tract: proximal and distal at 4 somites, and distal only at 6 somites.
69 lial growth factor A (VEGFA) ligand from the somites, and finally for gata2 expression in the DA, but
70  dorsal medial dermomyotome of newly forming somites, and immunohistological studies show that Zic2 p
71 egmentation of the vertebrate body axis into somites, and later vertebrae, relies on a genetic oscill
72 uently converted into the spatial pattern of somites, and Mesp2 plays crucial roles in this conversio
73 rmal development of craniofacial structures, somites, and neural crest cells.
74 p from the sclerotome layer of the metameric somites, and PNS neurons and glia differentiate from neu
75        Here, Notch and Wnt signaling directs somite anterior/posterior (A/P) polarity specification a
76 ver, somite size is reduced and later-formed somites are caudalized, coincident with increased cell d
77    In embryos where chd and spt are mutated, somites are completely absent.
78                                              Somites are embryonic precursors of the axial skeleton a
79                                              Somites are embryonic precursors of the ribs, vertebrae
80                               However, these somites are not subdivided into rostral and caudal halve
81 termination wavefront, controlling where new somites are permitted to form along the anteroposterior
82                              We propose that somites are self-organizing structures whose size and sh
83                                              Somites are the precursors of vertebrae and associated m
84                                              Somites are thought to form via the intersection of two
85 velopment when the vertebral precursors, the somites, are rhythmically produced from presomitic mesod
86                 Cells of the spinal cord and somites arise from shared, dual-fated precursors, locate
87 stream, and that they consequently enter the somites as multiple streams, or stall shortly after ente
88  by expression of Lbx1, are specified in the somite at forelimb level, but endothelial progenitors ar
89 ownstream Wnt and Notch activity crucial for somite border formation.
90 sp quadruple mutant embryos the positions of somite boundaries were clearly determined and morphologi
91                                Along nascent somite boundaries, Cadherin 2 levels decrease, becoming
92 gmentation clock', regulate the formation of somite boundaries.
93 hibition restricts de novo ECM production to somite boundaries.
94         Moreover, we find that the posterior somite boundary cells with high levels of stable Cdh2 ha
95 rospectively tracking oscillations of future somite boundary cells, we find that clock reporter signa
96 and that, in zebrafish, the genes regulating somite boundary formation also regulate the development
97 that a gene network previously implicated in somite boundary formation, involving the transcriptional
98 eptor integrin alpha5 (Itgalpha5) to promote somite boundary formation.
99  (CDH2), marking the interface of the future somite boundary in the anterior PSM.
100 n enhanced green fluorescent protein outside somite boundary, especially in head region.
101 a statistical enrichment of Dvl in notochord-somite boundary-(NSB)-directed protrusions, which is dep
102 on of the acellular fissure that defines the somite boundary.
103 is a step-like drop in stable Cdh2 along the somite boundary.
104 tal and tissue stiffness along the posterior somite boundary.
105                  During this process, paired somites bud from the presomitic mesoderm (PSM), in a pro
106  regulate the number of premyogenic cells in somites but does not regulate myogenic initiation in the
107 nd spatially restricted to the center of the somite, but that motor axons are dispensable for segment
108 ead and some neck muscles do not derive from somites, but mainly form from mesoderm in the pharyngeal
109 al muscles of body and limb are derived from somites, but most head muscles originate from cranial me
110 for proper patterning of the neural tube and somites by regulating notochord formation, and provide e
111 zebrafish STARS (zSTARS) first occurs in the somites by the 16 somite stage [17 hours post fertilizat
112            Significantly, markers of nascent somite cell fate expand throughout the PSM, demonstratin
113 gether, our data demonstrate Pax3-expressing somite cells as a source of OSM and SHM fibres, and high
114 ntary swallowing, arise from Pax3-expressing somite cells.
115  of the presomitic mesoderm anterior border, somite chevron morphology and hypaxial myoblast migratio
116 elopment of the dermomyotome in the anterior somite compartment.
117 her are essential for the development of all somite compartments.
118 extra pharyngeal arch, extra ribs, and extra somites, confirming endogenous roles of miR-196.
119                 Utx-null embryos had reduced somite counts, neural tube closure defects and heart mal
120 Dll3 specifically disrupts key regulators of somite cycling, we carried out functional analysis to id
121 which results in ectopic Fgf8 expression and somite defects, was recruited near the RARb RARE by RA,
122 the "inhibitory" class of alpha-subunits) in somite derivatives.
123 is severely affected, precluding analysis of somite derivatives.
124 exhibiting stem cell characteristics in both somite-derived and branchiomeric muscles.
125                                    Occipital somite-derived cells migrate into the tongue primordium
126 ineage origin) with their limb and diaphragm somite-derived counterparts, but are remarkably endowed
127     We conclude that the small proportion of somite-derived endothelial cells in the limb is required
128 xial muscle of the somite proper and abaxial somite-derived migratory muscle precursors.
129 o initiate myogenesis in branchial arch- and somite-derived muscles are known, but the comparable ups
130  common hallmarks with the prototypic SCs in somite-derived muscles, they distinctively feature robus
131 ta signaling in the development of occipital somite-derived myogenic progenitors during tongue morpho
132 s and oblique EOMs compared with synapses in somite-derived skeletal muscle.
133 muscles constitute a transition zone between somite-derived skeletal muscles of the trunk and limbs,
134 se elimination is occurring in most EOMs and somite-derived skeletal muscles, it appears to be dramat
135  typically studied body and limb muscles are somite-derived.
136     Blastopore closure, notochord formation, somite development, neural tube closure, and the formati
137 Rgamma2 serves as an activator, facilitating somite differentiation.
138 oRNAs (myomiRs) miR-133 and miR-1/206 during somite differentiation.
139  notochord during early segmentation, in the somites during later segmentation and in the liver at th
140 ession of a reporter in the tailbud, PSM and somites during somitogenesis.
141  between the 10 somite (otic placode) and 20 somite (early otic vesicle) stages.
142 ilopodia protrude from the basal surfaces of somite epithelial cells.
143 and Zic1 in transactivating the Myf5 epaxial somite (ES) enhancer in concert with the Myf5 promoter.
144                    Intersegmental vessels of somites failed to reach the dorsal longitudinal anastomo
145 genitors can be transfated from notochord to somite fate after gastrulation by ectopic expression of
146 tity: The Hox code is fixed independently of somite fate.
147         beta-Catenin is necessary within the somite for dermomyotome and myotome formation and delami
148                                              Somites form along the embryonic axis by sequential segm
149                                              Somites form by an iterative process from unsegmented, p
150             During somitogenesis, epithelial somites form from the pre-somitic mesoderm (PSM) in a pe
151 h a role for ntl in mesoderm formation, some somites form within the tail region of embryos lacking n
152 ck' activity that governs the periodicity of somite formation and (iii) preserve the composition and
153 wavefront determines the spatial position of somite formation and the somitogenesis clock controls pe
154 segmentation was significantly affected, and somite formation ceased after the production of about 15
155 ants for Wdr5 and Hdac1 exhibit asymmetrical somite formation characteristic of RA-deficiency.
156                  In the mouse embryo, timely somite formation from the presomitic mesoderm (PSM) is c
157                                              Somite formation is a periodic process regulated by a mo
158 ranial neural crest cell-streams relative to somite formation is accelerated in rapidly developing fr
159            Similarly, nodal-independent tail somite formation requires ntl.
160 ranscription factors Ntla and Tbx16 regulate somite formation upstream of this by controlling supply
161 ggest that the segmentation clock may signal somite formation using a phase gradient with a two-somit
162 ignalling pathways then cooperate to promote somite formation via cMESO1/Mesp2.
163                   Due to the continuation of somite formation, this mechanism leads to the progressiv
164 cs of cells in the tailbud and their role in somite formation, we have analyzed the genetic factors a
165  of miRNAs in mesoderm development including somite formation, we used T (Brachyury)-Cre mouse line t
166        By using our software (ACME) to study somite formation, we were able to segment touching cells
167 l pulses restore synchrony, thereby rescuing somite formation.
168 k-and-wavefront mechanism is unnecessary for somite formation.
169 osure seemed to be temporally uncoupled with somite formation.
170  PSM that has a periodicity equal to that of somite formation.
171  complete anterior-posterior axis during the somite-forming stages.
172 ized by the periodic formation of epithelial somites from the mesenchymal presomitic mesoderm (PSM).
173 ing genes, controls the periodic cleavage of somites from unsegmented presomitic mesoderm during vert
174                        These include Uncx, a somite gene required for rib and vertebral patterning, a
175          At limb level, Pax3(+) cells in the somite give rise to skeletal muscles and to a subpopulat
176                                              Somites give rise to myogenic progenitors that form all
177 ipotent Pax3-positive (Pax3(+)) cells in the somites give rise to skeletal muscle and to cells of the
178                                        These somites have axial identity: The Hox code is fixed indep
179         Blocking all Fgf signalling at 10-20 somites, however, using the pan-Fgf inhibitor SU5402, re
180  spinal motor axons also project through the somites in a segmental fashion.
181  extensions found in epithelial cells of the somites in chicken embryos.
182 hin2) leads to the formation of asymmetrical somites in mouse embryos, similar to embryos deprived of
183 to be associated with the formation of trunk somites in the wild-type embryo.
184 mental features of the vertebrate body - the somites - in which beta1-integrin activity regulates epi
185              The formation of body segments (somites) in vertebrate embryos is accompanied by molecul
186 alling promotes myogenesis in the vertebrate somite, in part by raising the activity of muscle regula
187 formation of an ectopic tail, which contains somites, in embryos devoid of nodal signalling, and this
188  subsequently within the mesoderm to specify somites instead of posterior vascular endothelium.
189 le progenitor cells migrate from the lateral somites into the developing vertebrate limb, where they
190 whereby migration of myogenic cells from the somites into the limb bud is followed by their extension
191 ial and myogenic cells migrate from adjacent somites into the limb bud.
192            A second major subdivision of the somite is between primaxial muscle of the somite proper
193 l plate mesoderm (LPM) adjacent to occipital somites is a recently identified embryonic source of cer
194 nt embryos, Myf5 expression in newly forming somites is deficient in both sonic hedgehog(-/-) and in
195             Myf5 activation in newly forming somites is delayed in Zic2 mutant embryos until the time
196                     The segmental pattern of somites is generated by sequential conversion of the tem
197           We show that VEGFA produced in the somites is required to initiate adult haemangioblast pro
198 n patterns during development of the palate, somite, kidney, and testis, suggesting that it may be an
199 ties: the clock period in the posterior PSM, somite length and the length of the PSM.
200 e the ribs have been shown to arise from the somites, little is known about how the two segments are
201 esoderm markers such as Tcf15 and Meox1, and somite markers such as Uncx, but failed to express scler
202 a in zebrafish embryos: (a) the variation in somite measurements across a number of zebrafish mutants
203                                          Non-somite mesoderm treated with Noggin generates many somit
204 ral sources, including the lateral plate and somite mesoderm.
205                             During zebrafish somite morphogenesis, segmental assembly of an ECM compo
206 and FN pillars are also necessary for proper somite morphogenesis.
207  in the link between the molecular clock and somite morphogenesis.
208 fficiency of myod leads to reduced embryonic somite muscle bulk.
209    Target tissues included the heart, liver, somite muscle, fins, and corpuscles of Stannius.
210 s have a role in Myf5 regulation for epaxial somite myogenesis in the mouse embryo.
211    We show that a fundamental distinction in somite myogenesis is into medial versus lateral compartm
212                            As they enter the somites, neural crest cells rearrange into spatially res
213 ariety of developing tissues in mice such as somites, neural tubes, and limb buds.
214  show that RARbeta2 plays a specific role in somite number and size, restriction of the presomitic me
215                                              Somite number remains normal in mutant embryos up until
216 xial and abaxial domains and by increases in somite number, not by changes in the function of primaxi
217 ront model) is generally believed to control somite number, size, and axial identity.
218 he limb, in multipotent Pax3(+) cells in the somite of the mouse embryo.
219 ssion profile of cEbf1 was first detailed in somites of chick embryos (from HH8 to HH28).
220 limb fields by mature structures such as the somites or mesonephros.
221 s, jamb2 and jamc2, were not detected in the somites or myotome of wild-type embryos.
222 nopus skeletal muscle development, including somite organization, migration of hypaxial muscle anlage
223 ecify posterior otic identity between the 10 somite (otic placode) and 20 somite (early otic vesicle)
224 se gastrula between Early Streak (ES) and 12-somite pair (-s) stages (~6.75-9.0 days post coitum, dpc
225 ing phenotypes in the segmentation clock and somite patterning of mutant mice suggest that LFNG prote
226   Less is understood about how RAR regulates somite patterning, rostral-caudal boundary setting, spec
227 he specific RAR subtype that is required for somite patterning.
228  formation using a phase gradient with a two-somite periodicity.
229 regions, which direct Eya1 expression to the somites, pharyngeal pouches, the preplacodal ectoderm (t
230  to ligand and its localization in the trunk somites positions it at the right time and place to resp
231 defects in somite segmentation and a loss in somite posterior polarity leading to fusions of vertebra
232 dothelial fate when ectopically expressed in somite precursors.
233 ion, with a periodicity matching the rate of somite production.
234 naling and myogenesis in selected epithelial somite progenitor cells, which rapidly translocate into
235 he somite is between primaxial muscle of the somite proper and abaxial somite-derived migratory muscl
236                 Vertebral precursors, called somites, provide one of the best illustrations of embryo
237 ranslated into the periodic morphogenesis of somites remains poorly understood.
238 eochondrogenically committed sclerotome from somite requires sonic hedgehog and Nog.
239  Fgf and Hedgehog function between 10 and 20 somites results in symmetrical otic vesicles with neithe
240 REB family in the mesoderm causes defects in somite segmentation and a loss in somite posterior polar
241 ignaling as a means to orchestrate cells for somite segmentation and anterior/posterior patterning.
242 unction of PAPC in chicken embryos disrupted somite segmentation by altering the CDH2-dependent epith
243                                          The somite segmentation clock is a robust oscillator used to
244 e functions of the two Delta proteins in the somite segmentation clock--an explanation that is based
245 lator called the segmentation clock controls somite segmentation in the vertebrate embryo.
246 on changes in mesoderm development uncovered somite segmentation, a previously unobservable human emb
247 nic mesoderm, while Dicer is dispensable for somite segmentation, it is essential for proper limb bud
248 Knockdown of itgalpha6b resulted in abnormal somite shape, fewer somitic cells, weaker or absent myf5
249   Accordingly, LPM adjacent to the occipital somites should be regarded as posterior cranial mesoderm
250 s but were also present medially through the somites similarly to ectothermal anamniotes.
251                                     However, somite size is reduced and later-formed somites are caud
252 sion, and leads to a persistent reduction in somite size until at least the independent feeding stage
253 ransactivation of Gli-dependent Myf5 epaxial somite-specific (ES) enhancer activity in 3T3 cells, and
254                 Our results demonstrate that somite-specific gene expression is required for the prod
255 STARS) first occurs in the somites by the 16 somite stage [17 hours post fertilization (hpf)].
256        col14a1a expression peaked between 18-somite stage and 24 hours postfertilization (hpf), where
257 is gene, dissections were performed on early somite stage embryos during an eight-hour time window of
258 mlin RNA expression is upregulated at the 35 somite stage of development.
259 e endocardial progenitors as early as the 10-somite stage which suggests that Hh signaling is require
260 ls, labeled by lipophilic dye at the 4- to 6-somite stage, to regions of the heart at 20 to 25 somite
261  data, and in situ hybridization analysis of somite-stage embryos, we carried out comparative analyse
262 right asymmetry (L/R), are observed at early somite stages ( approximately E8.5) [1, 2].
263  pancreatic mesenchyme between the 26 and 27 somite stages (approximately 10.0 dpc) and became interm
264 between the one-somite and the six- to eight-somite stages and is solely dependent on Wnt1 function i
265    In our model, specification occurs during somite stages due to varying Hedgehog protein levels, wh
266 ing such that during late gastrula and early somite stages of embryogenesis, Wnt activity must be sup
267 ryos show that Cubn is required during early somite stages to convey survival signals in the developi
268                         At the most advanced somite stages, when completion of spinal closure is immi
269  left wall of the KV between the six- and 12-somite stages, which is coincident with known left-sided
270 ted PE specification role for Tbx5a at early somite stages; this role occurs earlier than, and appear
271 ent and, in particular, in the regulation of somite survival and axial rotation, a crucial developmen
272 id signalling, which is required to maintain somite symmetry by interacting with Fgf8 in the left-rig
273 e Ehmt2/G9a, as a RA coactivator controlling somite symmetry.
274              Vertebrae derive from embryonic somites that are continuously produced posteriorly from
275 ween different tissues derived from the same somites that contribute to the structures of the cervica
276  mesoderm treated with Noggin generates many somites that form simultaneously, without cyclic express
277 estricted to the hypaxial region of anterior somites that generate migratory muscle precursors (MMPs)
278 er dorsal and lateral to neural tube and the somites that is normally formed by PNA-binding proteins
279 al skeletal elements arise from the paraxial somites, the appendicular skeleton and sternum arise fro
280 S that was introduced into a subset of chick somites, the progenitors that give rise to dermis and mu
281                                 Formation of somites, the rudiments of vertebrate body segments, is a
282  motifs of vertebrate bodies and organs, the somites, the skeletons of the paired limbs, and musculos
283 k neural crest along the rostral side of the somites, the ventromedial pathway, the branchial arches,
284 ebrafish development, derive from the caudal somites through an epithelial-mesenchymal transition (EM
285  is non-cell-autonomous, and acts within the somite to bridge the Wnt and Notch signalling pathways.
286 or is required earlier within the developing somite to regulate HSC emergence in a non-cell-autonomou
287 that Notch3 performs a novel role within the somite to regulate the neighboring precursors of hemogen
288 sduction of requisite Notch signals from the somite to the precursors of HSCs, and that these events
289 gratory route of cells from the anteriormost somites to OSM and SHM destinations.
290 recursor cells (MPCs) have migrated from the somites to the limb bud and populated the prospective mu
291 e stage, to regions of the heart at 20 to 25 somites, using mouse embryo culture.
292 is expressed prominently in the brain, eyes, somites, ventral blood island and branchial arches.
293                                However, each somite was caudalized in a similar manner to the mouse M
294 f11r) and migrate axially across the ventral somite, where Jam2a and the Notch ligands Dlc and Dld ar
295 nic development, skeletal muscles arise from somites, which derive from the presomitic mesoderm (PSM)
296 engrailed-1 (en1) staining in anterior trunk somites, which is dependent on Hedgehog (Hh) signaling.
297 l distribution corresponding to the injected somites, which suggests that blocking GNAS activity in a
298 Zebrafish ortholog of Nogo-B is expressed in somite while expression of zebrafish NgBR is localized i
299 anterior gradient of stable Cdh2 within each somite, while there is a step-like drop in stable Cdh2 a
300 the paraxial mesoderm becomes segmented into somites, within which proliferative muscle progenitors a

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