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1 eparated by a variable number of base pairs (spacers).
2 promoter and to the 5'- external transcribed spacer.
3 g apoptotic levels in contrast to a miniPEG2 spacer.
4 ng direct repeats of 7-bp motifs with a 4-bp spacer.
5 atic rings connected by a linear or a cyclic spacer.
6 gold ground plane by a thin silicon dioxide spacer.
7 U) comprising two MXREs separated by a 30-bp spacer.
8 shaft of the trocar, such that they act as a spacer.
9 d on either ends of a linear, C-12 aliphatic spacer.
10 a pentacene dimer linked by a non-conjugated spacer.
11 d by the nature and length of the respective spacer.
12 e C2 site that initiates removal of the ITS2 spacer.
13 is integrated into the CRISPR array as a new spacer.
14 PDI to the 4- and 5-positions of a xanthene spacer.
15 gh, bacteria develop a diverse population of spacers.
16 stations and rapid sliding along nonbinding spacers.
17 hanges in the length of internucleosomal DNA spacers.
18 ed with the most recent and thus most useful spacers.
19 lf-sites are either abutting or separated by spacers.
20 xposed the inherent limitations of PEG-based spacers.
22 by sequencing of the internally transcribed spacer 1 (ITS1)-5.8S-ITS2 rRNA-encoding regions of cultu
23 revisiae Sir2 is recruited to nontranscribed spacer 1 (NTS1) of the rDNA array by interaction between
25 d the nuclear ribosomal internal transcribed spacer-1 sequences from each sample were obtained using
26 CR amplification of the internal transcribed spacer 2 (ITS2) region (ITS2-PCR) followed by sequencing
27 he domain including the internal transcribed spacer 2 (ITS2) that separates 5.8S and 25S ribosomal RN
28 PCR amplicons from the internal transcribed spacer 2 and the D2 region of 28S ribosomal RNA gene wer
29 equencing of the fungal internal transcribed spacer 2, we studied the root and rhizosphere fungal com
30 ith consensus or natural REs, both with long spacers: a fully specific complex where two p53 dimers b
34 mutation, I473F, that increases the rate of spacer acquisition by more than two orders of magnitude.
35 onserved Cas1 and Cas2 proteins; it leads to spacer acquisition from both foreign and bacterial DNA a
37 on host factor (IHF) protein is required for spacer acquisition in vivo and for integration into line
38 n system, including sequence determinants of spacer acquisition that are relevant for understanding b
39 he phage life cycle to generate a pattern of spacer acquisition that ensures a successful CRISPR immu
40 We used this system to reveal aspects of spacer acquisition, fundamental to the CRISPR-Cas adapta
45 ve gold layer and two transparent dielectric spacers, also forming a vertical micro-cavity known as a
46 prolyl moiety, a double arginine sequence, a spacer amino acid followed by a hydrophobic residue and
47 oated diffraction grating with a transparent spacer and a suspended graphene layer to form a doubly r
48 SQ1 and RSQ2, with benzodithiophene (BDT) pi-spacer and cyanoacrylic acid acceptor were synthesized b
49 ial genomes for the co-existence of a CRISPR spacer and its target, a potential indicator for CRISPR
50 DPPA-type ligands linked through an organic spacer and N-functionalized DRPA-type ligands, in which
51 old based sensor chip using double side tape spacer and StartingBlock phosphate buffer saline- Tween-
52 umerous insights into the importance of both spacer and target sequences for interference and priming
54 udies strengthen the importance of the amide spacer and the direct linkage of carbonyl group to the g
56 ounting for the strict requirement of a 4-bp spacer and the highly cooperative binding of the dimer.
57 sitivity to orbital interactions between the spacer and the metal, reflected in measurements of Javg
58 ale plasmonic components across a dielectric spacer and through a conductive junction lead to excitat
59 complexes assist the 5' external transcribed spacer and U3 small nucleolar RNA in providing an intert
62 nsisting of a derivative of acetazolamide, a spacer, and a peptidic (99m)Tc chelator, was labeled usi
63 cysteine antibody conjugation, a hydrophilic spacer, and either an alkyne (6), triazole (7), or piper
64 d on a silver-coated glass slide with a thin spacer, and excited by a laser-diode from the backside t
65 on with mutant phages demonstrated that most spacers are acquired during DNA injection, but not durin
68 r the CRISPR target is present, toxic CRISPR spacers are lost over time, while in the absence of sele
71 Short DNA segments of the invader, known as spacers, are stored in the CRISPR array as immunological
76 ht of P-(MORF2)x, incorporation of a miniPEG spacer between Fab' and MORF1 and between polymer backbo
78 ioactive compound or to introduce a suitable spacer between the cRGD unit and the bioactive compound.
79 rom amides carrying a variable pi-conjugated spacer between the electron-donating (D) and electron-ac
81 ying the length of sh-dsDNA backbone and the spacer between two adjacent mCGs, we synthesized three d
82 fty percent of all validated p53 REs contain spacers between 1 and 18 bp; however, their functional s
86 stem can be overcome through use of type I-F spacers by a horizontally-acquired type III-B system.
87 lling moieties are separated by a conjugated spacer (C horizontal lineX)n, where X is CH or N, displa
90 le, aptamer, protein scaffold, or antibody), spacer, cleavable linker, and therapeutic warhead, crite
93 NAs from the ribosomal DNA (rDNA) intergenic spacers, consistent with its previously reported silenci
94 or Os) that are separated by redox-inactive spacers consisting of 1,4-bis[2-(4-pyridyl)ethenyl]benze
95 ic CRISPR-Cas adaptive immune systems insert spacers derived from viruses and other parasitic DNA ele
96 tions and numerical simulations show that if spacers differ mainly in ease of acquisition, or if the
98 protospacers, while an excessive variety of spacers dilutes the number of the CRISPR complexes armed
99 F system by tuning the metal-film thickness, spacer distance, excitation angle and polarization, and
102 frequently results in high within-population spacer diversity, but it is unclear if and why this is i
104 ial (cox1) and nuclear (internal transcribed spacer) DNA data from the Schistosoma eggs or miracidia
105 UB1 and CUB2 domains in ADAMTS13 bind to the spacer domain exosite of a truncated ADAMTS13 variant, M
106 conformational change that disrupts the CUB1-spacer domain interaction and thereby activates ADAMTS13
107 at competition for CUB-domain binding to the spacer domain is not the dominant mechanism behind the c
111 aring a 4,7-bisthienylbenzothiadiazole (TBT) spacer due to the strong electron-accepting ability of i
113 CRISPR, however, Cas1-Cas2 alone integrates spacers efficiently in vitro; other Cas proteins (such a
115 ransfer RNA maturation, external transcribed spacer (ETS) and internal transcribed spacer (ITS) seque
118 hese hybrid units together, using a flexible spacer, facilitates the aggregation of these modules in
119 strate one application of these oligoPPEs as spacers for the water-soluble Gd rulers of the type Gd-P
120 d a fluorogenic Trp-BODIPY amino acid with a spacer-free C-C linkage between Trp and a BODIPY fluorog
124 leads to selective acquisition of additional spacers from DNA molecules recognized by the effector-cr
125 el CRISPR loci and thousands of novel CRISPR spacers from each metagenome, reinforcing the notion of
127 riosus, actively incorporates DNA fragments (spacers) from both plasmid (foreign) and host genome (se
130 water-soluble Gd rulers of the type Gd-PyMTA-spacer-Gd-PyMTA with Gd-Gd distances of 2.1-10.9 nm.
133 electron donor-acceptor dyad with an alkyne spacer has been investigated using a combination of ultr
134 of a pyrenyl tetraamine with an isophthaloyl spacer has led to two new water-soluble carbohydrate rec
135 transposon-associated CRISPR arrays contain spacers homologous to plasmid and temperate phage sequen
142 We first evaluate the optimal number of spacers in a simple scenario of an infection by a single
143 PR interference or acquisition of additional spacers in CRISPR array during primed CRISPR adaptation.
144 iated defense utilizes information stored as spacers in CRISPR arrays to defend against genetic invad
145 (type III-B) is broadly capable of acquiring spacers in either orientation from RNA and DNA, and exhi
146 spoligotyping that can identify unamplified spacers in membrane-based spoligotyping due to asymmetri
151 photochemical reaction in the redox-inactive spacer increasing the permeability of the assembly.
155 varies widely among CRISPR-Cas systems, the spacer integration mechanism is essentially identical.
156 echanistic framework to explain the stepwise spacer integration process and the leader-proximal prefe
158 these results reveal that Cas1-Cas2-mediated spacer integration requires IHF-induced target DNA bendi
159 the CRISPR-Cas system specifies the site of spacer integration to optimize the immune response again
166 his bipartite character explains why the SP1 spacer is a critical element of HIV-1 Gag but is not a u
171 wo genetic markers, the internal transcribed spacer (ITS) and a fragment of the beta-tubulin gene.
172 the tribe, with nuclear internal transcribed spacer (ITS) and external transcribed spacer (ETS) seque
175 6S rRNA gene and fungal internal transcribed spacer (ITS) copy numbers and extracellular enzyme activ
176 ng of nuclear ribosomal internal transcribed spacer (ITS) of the rRNA gene with fungal specific ITS p
179 CR method targeting the internal transcribed spacer (ITS) region of the rRNA operon was validated for
180 c markers used were the internal transcribed spacer (ITS) region, and fragments of the beta-tubulin (
181 was traceable via their internal transcribed spacer (ITS) sequence to five distinct Panicoideae gener
182 cribed spacer (ETS) and internal transcribed spacer (ITS) sequences are excised and, as non-functiona
184 for sequencing were the internal transcribed spacer (ITS), a portion of the nuclear large subunit (LS
186 d by introducing a nanoscopically engineered spacer layer prepared by chemical vapor deposition (CVD)
187 surface structure consisting of a dielectric spacer layer sandwiched by an array of random metallic n
189 erates free carriers in a photosensitive ZnO spacer layer, which changes the metamaterial optical pro
192 ment, only the analogues with a well-defined spacer length ( approximately 25 A) precisely fit inside
193 e-activity study reports on the influence of spacer length (between mannose-mimicking headgroups and
194 d two key factors, that is, (i) the critical spacer length (longer than Gly) and (ii) the presence of
195 e Type I-E CRISPR machinery and suggest that spacer length can be modified to fine-tune Cascade activ
196 d rapid purification, a method for tailoring spacer length of chimeric receptors for optimal function
202 s cause primed adaptation, while crRNAs with spacer lengths of more than 20 nucleotides cause both pr
204 ral species, the predicted optimal number of spacers lies within a range that agrees with experimenta
205 e non-CRISPR genomic elements contain repeat-spacer-like structures and are mistaken as CRISPRs.
206 at sheets at the top and bottom separated by spacers made of two-dimensional crystals with a precisel
207 etition between two trends: too few distinct spacers make host vulnerable to an attack by a virus wit
209 BMes2 ; L=PhC(N(t) Bu)2 ; R=1,12-xanthendiyl spacer; Mes=2,4,6-Me3 C6 H2 ), acting as a frustrated Le
210 alpha-d-GlcNAc equipped with a 3-aminopropyl spacer moiety was prepared by a sequential assembly of m
211 ic linkage between galactose and the linker (spacer) molecule and final purification of the target mu
213 al sequences (RSSs) containing a heptamer, a spacer of 12 or 23 base pairs, and a nonamer (12-RSS or
217 (PBI) organogelator molecules bearing alkyl spacers of varied lengths (ethylene to pentylene chains,
219 y, to investigate the effect of alkylated pi-spacer on dye aggregation on the TiO2 surface and recomb
221 stations, long alkyl or oligoethylene glycol spacers or bulky barriers in-between the binding station
222 n B12, our assay incorporates an innovative "spacer pad" for increasing the duration of the key compe
223 ctor proteins and a CRISPR RNA (crRNA) whose spacer partially matches a segment (protospacer) in targ
224 resis (PFGE) to the combination of ribosomal spacer PCR (RS-PCR) and virulence gene identification fo
225 us (RSV), CA carries a short and hydrophobic spacer peptide (SP) at its C-terminus early in the matur
226 CTD) of the capsid (CA) region and the first spacer peptide (SP1) of the precursor structural protein
227 n Gag processing: the cleavage of the capsid-spacer peptide 1 (CA-SP1) intermediate to mature CA by t
228 panning the junction between capsid (CA) and spacer peptide 1 (SP1) subunits of Gag, a segment that i
229 Gag fragment comprising the matrix, capsid, spacer peptide 1 and nucleocapsid domains (referred to a
230 x domains, and proteolytic processing at the spacer peptide 1|nucleocapsid junction by HIV-1 protease
234 ining a central photochromic dithienylethene spacer predictably forms a ferrous [Fe2 L3 ](4+) helicat
236 ease cleavage between capsid protein p24 and spacer protein-1, producing immature, noninfectious viri
238 bronchoscopy, ribosomal internal transcribed spacer region 1 DNA was amplified and sequenced and fung
242 se I hypersensitive sites (lacking the large spacer regions) restores CSR to a level equivalent to or
243 defined sites separate the mature rRNAs from spacer regions, but the identities of several enzymes re
247 uences containing two, three, or four carbon spacers revealed that the natural polyamine sequence (no
252 with the greatest mutability observed within spacer sequences ( approximately 1.35-fold above backgro
255 palindromic arm sequences separated by short spacer sequences that form the hairpin stem and loop res
259 are a cluster of repeats separated by short "spacer" sequences derived from prokaryotic viruses and p
262 taining abasic sites and polyethylene glycol spacers show that the ssDNA base also influences translo
264 Cas1-Cas2 adaptation complex, which excises spacer-sized fragments and channels them for insertion i
266 hia coli cells undergoing primed adaptation, spacer-sized fragments of foreign DNA are associated wit
268 prepared by coadsorbing probes with lateral spacers strands comprised of phosphorothioated adenine n
271 contained a unique CRISPR/Cas system with a spacer that matched a partial viral genome from the meta
273 phages by acquiring short genomic sequences (spacers) that target specific sequences in the viral gen
274 ity by employing short DNA sequences, termed spacers, that guide Cas proteins to cleave foreign DNA.
275 reference to arm with more recently acquired spacers, the rate of viral mutation, and the number of v
277 elocity obtained reduces with increase in Pt spacer thickness due to reduction in DMI and enhances on
278 be sensitive to sub-nanometre changes in the spacer thickness, correlating over sub-monolayer spacer
280 er thickness, correlating over sub-monolayer spacer thicknesses, but not for thicker spacers where ID
285 sidues linked through trimethylenethioureido spacers to a calix[4]arene core and differing for the pr
288 are conserved features important for CRISPR spacer uptake in diverse prokaryotes and CRISPR-Cas syst
290 nit connected by a 1,2-vicinal calix[4]arene spacer was investigated in the transesterification of RN
291 combination with a sieving matrix and ionic spacer was used to perform in-line fluorescence in situ
292 bined with a polyethylene-glycol (PEG) based spacer were shown to be the best platform for trypsin de
296 ayer spacer thicknesses, but not for thicker spacers where IDMI continues to change even after PIM is
297 ic ligand motif with meta-substituted phenyl spacers, which enables the host to initially self-assemb
298 icient alkyne to allene isomerization of the spacer with a time constant increasing from a few hundre
299 he N(omega)-carbamoylated arginines, bearing spacers with a terminal amino group, were incorporated i
300 d van der Waals interactions of the flexible spacer wrapped around the fullerene that brings the C60
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