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1 nuclear RNAs (snRNAs) incompletely processed spliceosomal.
2 rminal RNA Recognition Motif (RRM) domain of spliceosomal A protein of the U1 small nuclear ribonucle
3 the Tetrahymena group I intron or the yeast spliceosomal ACT1 intron at the same location is not sub
5 al proteins, revealing a new role of Brr2 in spliceosomal activation in addition to U4/U6 unwinding.
6 for retaining U5 and U6 snRNPs during/after spliceosomal activation through its interaction with snR
7 owever, the truncation significantly impairs spliceosomal activation, leading to a dramatic reduction
11 omplex in OIS and demonstrate a link between spliceosomal and ribosomal components, functioning indep
12 ctivate essential RNAs, including ribosomal, spliceosomal and telomeric RNAs, cisplatin binding sites
13 on, SMN-C1 treatment increases the levels of spliceosomal and U7 small-nuclear RNAs and corrects RNA
17 These results identify the A complex as the spliceosomal assembly step dedicated to splice site pair
18 zation/calcium signaling controls a critical spliceosomal assembly step to regulate the variant subun
19 gesting a previously unknown role of Prp8 in spliceosomal assembly through its interaction with U1 sn
20 plice site pairing are separate steps during spliceosomal assembly, and ATP hydrolysis drives the irr
26 ate stage during conversion of pre-catalytic spliceosomal B complexes into activated B(act) complexes
27 ide insights into substrate selection during spliceosomal branching catalysis; additionally, this sys
30 trons, and the property that links them with spliceosomal catalysis, is their ability to undergo spli
31 ring binds to the TER1 precursor, stimulates spliceosomal cleavage and promotes the hypermethylation
32 that the widespread and basal N. crassa-type spliceosomal cleavage mechanism is more ancestral than t
33 The discovery of a prevalent, yet distinct, spliceosomal cleavage mechanism throughout diverse funga
35 tly upstream and partly overlapping with the spliceosomal cleavage site is a putative binding site fo
36 ombe telomerase RNA (SpTER1) is generated by spliceosomal cleavage, a reaction that corresponds to th
40 n of prespliceosomal complex A and the early spliceosomal complex B but, interestingly, not the very
42 tri-snRNP is a 1.5-megadalton pre-assembled spliceosomal complex comprising U5 small nuclear RNA (sn
43 o produce a 29-A density map of a stable 37S spliceosomal complex from the genetically tractable fiss
45 rabbits received a peptide from the Sm B/B' spliceosomal complex previously shown to be immunogenic
47 become committed at the first ATP-dependent spliceosomal complex when rearrangements lock U2 snRNP o
48 cle and the pre-mRNA results in a productive spliceosomal complex, leading to intermediates and produ
52 e the NTR, Prp43_Ntr1GP disassembles earlier spliceosomal complexes (A, B, B(act)), indicating that N
53 ctors in nuclear speckles and assembles into spliceosomal complexes in association with low-abundance
56 ecurring theme regards the dynamic nature of spliceosomal complexes, which may be even more intricate
60 ght on the dynamic assembly of this critical spliceosomal component and elucidate the molecular inter
61 Pre-mRNA processing factor 3 (PRPF3) is a spliceosomal component essential for pre-mRNA processing
63 F65) with the splicing factor 1 (SF1) or the spliceosomal component SF3b155 are exchanged during a cr
64 , the recognition of the intron substrate by spliceosomal components and the assembly of these compon
68 ing competition for specific binding between spliceosomal components involved in recognition of 5' an
69 t exonic splicing enhancers recruit multiple spliceosomal components required for the initial recogni
70 actors is consistent with the elimination of spliceosomal components that play a peripheral or modula
72 n the absence of the approximately 200 other spliceosomal components, performs a two-step reaction wi
73 t GFP-CDKC2 fusion proteins co-localize with spliceosomal components, that the expression of CDKC2 mo
74 or basic metabolites and retains a subset of spliceosomal components, with a transcriptome broadly fo
77 3p-associated material includes the expected spliceosomal components; however, we also identify sever
78 y1p acts together with U6 snRNA to promote a spliceosomal conformation favorable for first-step chemi
80 SCNM1 is also co-immunoprecipitated with the spliceosomal core Smith (Sm) proteins and demonstrates f
81 act modus operandi of Prp43 and of all other spliceosomal DEAH-box RNA helicases is still elusive.
92 efore are likely indirect effects of altered spliceosomal function, consistent with prior data showin
95 d pharmacologic evidence that leukemias with spliceosomal gene mutations are preferentially susceptib
96 of the mechanistic and biological effects of spliceosomal gene mutations in MDSs as well as the regul
104 oding splicing factors (which we refer to as spliceosomal genes) are commonly found in patients with
105 e identified additional somatic mutations in spliceosomal genes, including SF3B1, U2AF1, and SRSF2.
108 standing of the functions of Brr2p and other spliceosomal helicases has been limited by lack of knowl
110 intron-specific splicing function and early spliceosomal interactions and suggests links with cell c
111 lex formed between the branch site (BS) of a spliceosomal intron and its cognate sequence in U2 snRNA
112 sent a method in which we use the pattern of spliceosomal intron conservation to develop a series of
116 speculation on a possible interplay between spliceosomal introns and ectopic expression at the origi
119 r the emergence of eukaryotic retroelements, spliceosomal introns and other key components of the spl
120 sons thought to be evolutionary ancestors of spliceosomal introns and retroelements in eukaryotes.
121 that are widely held to be the ancestors of spliceosomal introns and retrotransposons that insert in
122 d to share common ancestry with both nuclear spliceosomal introns and retrotransposons, which collect
125 evolutionary perspective because the nuclear spliceosomal introns are thought to derive from group II
126 ypothesized to be the progenitor not only of spliceosomal introns but also of non-LTR retrotransposon
132 ring between U2 snRNA and the branch site of spliceosomal introns is essential for spliceosome assemb
138 een proposed for the origin and evolution of spliceosomal introns, a hallmark of eukaryotic genes.
139 e commonly believed to be the progenitors of spliceosomal introns, but they are notably absent from n
140 ron loss or evolution into protein-dependent spliceosomal introns, consistent with the bacterial grou
141 evolution, as they are likely progenitors of spliceosomal introns, retroelements, and other machinery
152 hanistically similar to the metazoan nuclear spliceosomal introns; therefore, group II introns have b
163 ntron in a transcription factor-like gene, a spliceosomal processed intron in its DNA polymerase gene
166 esults also demonstrate an analogy between a spliceosomal protein and ribosomal proteins that insert
167 They have both been shown to be part of sub- spliceosomal protein complexes that are essential for pr
168 iate with splicing factor 3B1 (SF3B1), a key spliceosomal protein of the U2 small nuclear ribonucleop
169 human orthologue of Saccharomyces cerevisiae spliceosomal protein Prp2, an RNA-dependent ATPase that
174 isrupted one allele of the gene encoding the spliceosomal protein SmD3, creating a model of haploinsu
175 amers of I-E(k)-containing peptides from the spliceosomal protein U1-70 that specifically stain disti
176 rminal RNA recognition motif (RRM) domain of spliceosomal protein U1A, interacting with its RNA targe
178 provide a mechanistic link between a mutant spliceosomal protein, alterations in the splicing of key
179 Recently, mutations in a gene encoding a spliceosomal protein, SF3B1, were discovered in a distin
180 tified that mutations in genes encoding core spliceosomal proteins and accessory regulatory splicing
181 xpression by promoting methylation of the Sm spliceosomal proteins and significantly altering the spl
184 Recently, recurrent mutations in numerous spliceosomal proteins have been associated with a number
186 mutations in predicted splicing factors and spliceosomal proteins that affect cell fate, the circadi
188 3 subsets: 1) 60 kd Ro, 52-kd Ro, and La, 2) spliceosomal proteins, and 3) double-stranded DNA (dsDNA
189 cancer and that mutations in genes encoding spliceosomal proteins, as well as mutations affecting th
190 etry, we identify approximately 145 distinct spliceosomal proteins, making the spliceosome the most c
192 s interaction with snRNAs and possibly other spliceosomal proteins, revealing a new role of Brr2 in s
193 ropose that the reversible ubiquitination of spliceosomal proteins, such as Prp3, guides rearrangemen
194 s screening resulted in the isolation of two spliceosomal proteins, U1-70K and U2AF(35) b that are kn
196 he similarity between maturases and the core spliceosomal Prp8 protein further supports this intrigui
198 ion, cytokine activity, protein kinases, RNA spliceosomal ribonucleoproteins, intracellular signaling
200 peting stem IIa and stem IIc helices are key spliceosomal RNA elements that optimize juxtaposition of
202 esidues in several non-coding RNAs: tRNA, U2 spliceosomal RNA, and steroid receptor activator RNA.
203 (Met) were vastly underrepresented, while U6 spliceosomal RNA, which functions in the nucleus, was en
204 e-specific 2'-O-methylation of ribosomal and spliceosomal RNAs and are critical for gene expression.
205 ant noncoding RNAs such as tRNAs, rRNAs, and spliceosomal RNAs are also heavily modified and depend o
206 n Prp24 that suppress mutations in U4 and U6 spliceosomal RNAs cluster primarily in the beta-sheet of
209 otected regions within small nucleolar RNAs, spliceosomal RNAs, microRNAs, tRNAs, long noncoding (lnc
210 a link between levels of snoRNA that target spliceosomal RNAs, spliceosomal function, and heart deve
214 ith ribonucleoprotein Gemin proteins but not spliceosomal Sm proteins needed for snRNP assembly.
217 t the SMN protein plays an important role in spliceosomal small nuclear ribonucleoprotein (snRNP) bio
220 , which has a well characterized function in spliceosomal small nuclear ribonucleoprotein assembly.
221 e in its function as an assembly machine for spliceosomal small nuclear ribonucleoprotein particles (
223 mponents of the CB, such as the SMN complex, spliceosomal small nuclear ribonucleoproteins (RNPs), sm
224 plays an essential role in the production of spliceosomal small nuclear ribonucleoproteins (snRNPs) a
225 ) complex is essential for the biogenesis of spliceosomal small nuclear ribonucleoproteins (snRNPs) a
226 erized function of SMN is as an assembler of spliceosomal small nuclear ribonucleoproteins (snRNPs).
227 s in pre-mRNA splicing, forming the cores of spliceosomal small nuclear ribonucleoproteins (snRNPs).
228 N complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs).
229 The SMN complex functions in the assembly of spliceosomal small nuclear ribonucleoproteins and probab
230 plays an essential role in the biogenesis of spliceosomal small nuclear ribonucleoproteins in all tis
231 NF family of proteins found in the U1 and U2 spliceosomal small nuclear ribonucleoproteins is highly
232 Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, in partic
234 er RNA (pre-mRNA) splicing requires multiple spliceosomal small nuclear RNA (snRNA) and pre-mRNA rear
235 nesis of eukaryotic ribosomal RNA (rRNA) and spliceosomal small nuclear RNA (snRNA), uridines at spec
239 toplasmic injection of fluorescently labeled spliceosomal small nuclear RNAs (snRNAs), target the nas
243 s important for the biogenesis of ribosomes, spliceosomal small nuclear RNPs, microRNAs and the telom
244 interactions with the C-terminal tail of the spliceosomal SmN/B/B' proteins in FAS/CD95 alternative s
245 8, promotes transcription of RNAPII-specific spliceosomal snRNA and small nucleolar RNA (snoRNA) gene
246 the first time that 5FU incorporates into a spliceosomal snRNA at natural pseudouridylation sites in
247 s have now shown that mutations in one minor spliceosomal snRNA, U4atac, are linked to a rare autosom
249 supports both the catalytic potential of the spliceosomal snRNAs and their resemblance to elements of
250 to that typical for eukaryotes, T. vaginalis spliceosomal snRNAs lack a cap and may contain 5' monoph
251 resulted in the coprecipitation of the five spliceosomal snRNAs, core Sm polypeptides, and the U1-sp
254 of Cajal bodies (CBs), major NBs involved in spliceosomal snRNP assembly and their role in genome org
256 SMN protein in orchestrating the assembly of spliceosomal snRNP particles and subsequently regulating
258 Here we present the detailed structure of a spliceosomal snRNP, revealing a hierarchical network of
259 k) physically associates with both dSNUP and spliceosomal snRNPs and localizes to nuclear Cajal bodie
263 on exon 7 splicing, demonstrating that core spliceosomal snRNPs influence SMN2 alternative splicing.
265 unique Sm core that differs from that of the spliceosomal snRNPs, and an essential heat labile proces
266 ins effect nuclear localization of the other spliceosomal snRNPs, the Lsm proteins mediate U6 snRNP l
267 he protein is required for the biogenesis of spliceosomal snRNPs, which are essential components of t
274 ingly, the mechanistic basis for restricting spliceosomal splicing to the first transesterification r
275 vators promote the formation of PPIs between spliceosomal sub-complexes, whereas repressors mostly op
276 ositive regulators include components of the spliceosomal subcomplex U1 small nuclear ribonucleoprote
280 ation within a putative RNA binding protein (spliceosomal timekeeper locus1 [STIPL1]) that induces a
283 n mammals, small multigene families generate spliceosomal U snRNAs that are nearly as abundant as rRN
288 exons by promoting productive docking of the spliceosomal U1 snRNP to a suboptimal 5' splice site.
290 cterized CHHC Zn-finger domain identified in spliceosomal U11-48K proteins, tRNA methyl-transferases
294 ) genes, which encode core components of the spliceosomal U6 small nuclear ribonucleoprotein complex,
295 and adenosine nucleosides from the 3' end of spliceosomal U6 small nuclear RNA (snRNA), directly cata
296 tions for up to ~160-nt-long RNAs, including spliceosomal U6 small nuclear RNA and a cyclic-di-AMP bi
298 e Lsm2-Lsm8 complex binds and stabilizes the spliceosomal U6 snRNA, whereas the Lsm1-Lsm7 complex fun
300 een proposed that defects in the assembly of spliceosomal uridine-rich small nuclear ribonucleoprotei
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