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1 triggered, ejecting Pol delta on the leading strand.
2 uanosine or 2-deoxyadenosine in the opposite strand.
3 , where and when TLS occurs on each template strand.
4 to Pol delta and recruits it to the lagging strand.
5 opening and trapping of the DNA non-template strand.
6 lting in a shortening of the C-terminal beta-strand.
7 ation, even in the presence of excess staple strands.
8 tructure to a 3-D network of one-dimensional strands.
9 = benzene bis-1,4-isonitrile to form polymer strands.
10 milar elongation between leading and lagging strands.
11 nsible for concerted cleavage of the two DNA strands.
12 of each of the complementary and homologous strands.
13 of the ability of ZO-1 to stabilize claudin strands.
14 formation of significant gaps in the nascent strands.
16 he gaps between two rods, with different DNA strands allows one to synthesize nanostructure assemblie
18 lusion, where the helicase encircles one DNA strand and excludes the other, acting as a wedge with an
20 uous runs of >/=4 RNA nucleotides within DNA strand and the only common substrate between the two bac
21 multaneously associated with the growing DNA strands and Mg2 PPi crystals during the rolling circle p
22 ucture are created by as few as four or five strands and so identify amyloid secondary structure even
24 ds Pol epsilon and tethers it to the leading strand, and PCNA (proliferating cell nuclear antigen) bi
25 onal stress by nicking and resealing one DNA strand, and some Top1-dependent mutations are due to tra
26 show that loss of RER in B. subtilis causes strand- and sequence-context-dependent GC --> AT transit
27 rom annual bone growth layer rings from dead-stranded animals, and then combined the bone and regiona
29 ms, homologous recombination (HR) and single strand annealing (SSA), and in conferring resistance to
31 le-base bulges 7T8, 5A6 and 4A5 on the guide strand are stacked-into the duplex, with conformational
33 ow that purified PBP2a can cross-link glycan strands bearing penta- and triglycine, but not monoglyci
38 sit that extensive resection of a DNA double-strand break (DSB) by a multisubunit helicase-nuclease m
40 P1 and RIF1 foci, suggesting that DNA double-strand break (DSB) repair by homologous recombination (H
41 ning (NHEJ) is the most prominent DNA double strand break (DSB) repair pathway in mammalian cells.
42 omologous recombination (HR) is a DNA double-strand break (DSB) repair pathway that protects the geno
43 end-joining (NHEJ) is the predominant double-strand break (DSB) repair pathway throughout the cell cy
44 enuated the expression of several DNA double-strand break (DSB) repair proteins and formation of repa
46 omologous recombination (HR)-mediated double-strand break (DSB) repair, which is mediated through its
47 localized to the progerin-induced DNA double-strand break (DSB) sites, blocking DSB repair, which led
48 h, the spatio-mechanical processes of double-strand break (DSB)-repair, especially the auxiliary fact
50 ate that the criterion used to select direct strand break appears to have a very significant role on
53 olved in DNA base excision repair and single-strand break repair (SSBR) and is important for genetic
54 ning pathway plays a critical role in double strand break repair and is uniquely responsible for cell
55 A1 is best known for its functions in double-strand break repair and resolution of DNA replication st
56 genes to irradiation and inefficient double-strand break repair correlated with severe late radiatio
57 proteins, SFPQ and NONO, promotes DNA double-strand break repair via the canonical nonhomologous end
58 romosome inactivation, imprinting and double-strand break repair, and mutations in SMCHD1 contribute
60 DNA to investigate the quality of the double-strand break repairs in the class-switch recombination p
62 ease in the stability of RAD51 at DNA double-strand break sites and in the overall efficiency of HR.
63 re, thereby hiding telomere ends from double-stranded break repair and ATM signaling, whereas POT1 re
64 d the effect of contrast agent on DNA double-strand-break (DSB) formation in patients undergoing magn
66 1 ends and catalyzes excision through double strand breaks (DSB) and the joining of newly excised tra
67 ced clustered DNA lesions (OCDL), DNA double-strand breaks (DSB), apoptosis, and the local and system
69 mbination, a subset of programmed DNA double-strand breaks (DSBs) are repaired as crossovers, with th
70 been implicated in the repair of DNA double-strand breaks (DSBs) by homologous recombination (HR), t
72 tones are modified in response to DNA double strand breaks (DSBs) in vivo by the ARTs Adprt1a and Adp
75 ein 80 (RAP80) helps recruit BRCA1 to double-strand breaks (DSBs) through the scaffold protein CCDC98
76 formation of recombination-initiating double-strand breaks (DSBs) via a feedback loop triggered by cr
80 normal XRCC1 recruitment at oxidative single-strand breaks (SSBs) as indicated by the requirement for
81 n, Mlh1-Mlh3 can generate religatable double-strand breaks and form an active nucleoprotein complex t
82 Homologous recombination repairs DNA double-strand breaks and must function even on actively transcr
84 (eg, ataxia-telangiectasia), and DNA double-strand breaks are crucial to the modulation of early gen
85 hese methods involve the induction of double-strand breaks at endogenous loci followed by the identif
86 cumulation of DNA damage, genome-wide double-strand breaks enriched at Ssb-binding regions and CpG is
88 es an antioxidant barrier against DNA double strand breaks induced by TGFbeta expressed in the tumor
89 ve end-joining (alt-EJ) repair of DNA double-strand breaks is associated with deletions, chromosome t
91 3BP1 activities is its recruitment to double-strand breaks via the interaction of the tandem Tudor do
93 agile X syndrome, are also subject to double-strand breaks within the repetitive tract followed by DN
94 for oxidized DNA lesions, double-strand DNA strand breaks, and pronounced susceptibility to single-s
95 ibiting cep-1/p53, endogenous meiotic double strand breaks, or the expression of MIRAGE1 DNA transpos
96 a potent environmental source of DNA double-strand breaks, potential drivers of genome structure evo
104 arkable in the examination of how DNA double-stranded breaks (DSBs) are repaired, with many component
105 ses to introduce changes (rather than double-stranded breaks and donor templates) and offers potentia
106 C DNA species with a covalently closed minus strand but an open plus strand (closed minus-strand RC D
107 cess, a small and constant set of unique DNA strands can be used to create DNA origami arrays of incr
108 LYL and YVEALL, which consist of 4-9 peptide strands, can contain a significant amount of beta-sheet.
110 alently closed minus strand but an open plus strand (closed minus-strand RC DNA [cM-RC DNA]) was dete
112 egment termed the stalk, which adopts a beta-strand conformation, instead of forming an alpha-helix a
113 To address this, we developed a new single-strand consensus sequencing assay for the determination
114 M pore loops touch both the Watson and Crick strands, constraining duplex DNA in a bent configuration
115 gger delivery and 5-phosphorylation of guide strands correlating with gene knockdown, we employed a p
116 cture or changing from alpha helical to beta strand depending on the solvents and molecules added to
120 lymerase with both reverse-transcriptase and strand displacement activities to obtain sensitivities o
121 d synthesis may serve to regulate sequential strand displacement and flap cleavage at other genomic s
123 e formation of FEN1 cleavage products during strand displacement on a nontelomeric substrate, suggest
124 e resection of clean DSBs by cleaving the 5' strand DNA approximately 10-20 nucleotides away from the
127 ysis, we establish that leading- and lagging-strand DNA polymerases function independently within a s
128 as evidence for oxidized DNA lesions, double-strand DNA strand breaks, and pronounced susceptibility
129 or AdnAB) generates the requisite 3' single-strand DNA substrate for RecA-mediated strand invasion.
130 ion to abasic sites ahead of nascent lagging strand DNA synthesis and subsequent bypass by error-free
131 atin promotes the regular priming of lagging-strand DNA synthesis by facilitating DNA polymerase alph
132 rrelation between the release of host double-stranded DNA (dsDNA) following rhinovirus infection and
133 train encodes a 9.8- to 9.9-kb linear double-stranded DNA (dsDNA) genome with large inverted terminal
134 orm a nucleoprotein filament (NPF) on double-stranded DNA (dsDNA) that is capable of unwrapping the n
137 for pairing the ssDNA with homologous double-stranded DNA (dsDNA), which serves as the template to gu
138 died as models for viruses containing double-stranded DNA (polymer) and condensing proteins (particle
139 e, a protein that binds complementary single-stranded DNA (ssDNA) and facilitates its annealing to du
140 h the cell cytoplasm, and deliver the single-stranded DNA (ssDNA) genome to the nucleus, where viral
142 and facilitates the immobilization of single stranded DNA (ssDNA) probe sequences on a wide variety o
147 ired DNA lesions, such as single- and double-stranded DNA breaks (SSBs and DSBs), and single-stranded
149 that it does not require formation of double-stranded DNA breaks or provision of a donor DNA template
153 separation and partitioning of large single-stranded DNA fragments of the homologous chromosome pair
156 at these contigs correspond to linear single-stranded DNA molecules that fold onto themselves to form
157 id (chloroplast) genomes are circular double-stranded DNA molecules, typically between 100 and 200 kb
159 HCR is a hairpin-free system in which double-stranded DNA monomers could dendritically assemble into
163 fusion constants of several different single-stranded DNA oligonucleotides trapped in an MspA nanopor
164 rvation leads to accumulation of both single-stranded DNA regions and intracellular ROS, and interfer
165 d MLPA products and subsequently to a single stranded DNA reporter probe bearing a HRP molecule, foll
166 to prime second strand synthesis of a single-stranded DNA template and generate millions of pair-wise
167 e-stranded RNA of the viral genome to double-stranded DNA that is then integrated into the DNA of the
168 of HIV-1 is reverse transcribed into double-stranded DNA that ultimately integrates into the host-ce
169 PORTANCE The papillomavirus (PV) is a double-stranded DNA tumor virus infecting cervix, mouth, and th
170 virus (ASFV) is a highly pathogenic, double-stranded DNA virus with a marked tropism for cells of th
172 t the emergence of previously unknown double-stranded DNA viruses which delineate and extend the dive
173 is strongly conserved in the complex double-stranded DNA viruses, including the herpesviruses and ma
174 with specific sequences of unmodified single-stranded DNA, and we have identified five tags that reac
175 eferentially bind the minor groove of double-stranded DNA, inhibit vaccinia virus infection by blocki
176 teins, including the telomeric repeat single-stranded DNA-binding protein Teb1 and its heterotrimer p
177 ingle stranded DNA-ssDNA) and hybrid (double stranded DNA-dsDNA) both via 3-NT reduction and guanine
178 ze smFRET data of structurally rigid, double-stranded DNA-oligonucleotides in aqueous buffer and in b
179 ble to detect hybridization of probe (single stranded DNA-ssDNA) and hybrid (double stranded DNA-dsDN
184 capacity to govern DNA topology and resolve strand entanglements during fundamental molecular proces
186 ependent of RAD51, which encodes the central strand exchange protein in yeast required for conservati
194 le conformational change from a latent 6beta-stranded form that diffuses in the cytoplasm to an activ
195 eta self-recognition sites spanning the beta strands found in cross-beta protofibril structures, lead
196 rmation of a heteroduplex, in which a single-strand from the broken DNA molecule pairs with a strand
197 nd an anti-parallel beta sheet consisting of strands from the top and bottom molecules, revealing the
199 anded DNA breaks (SSBs and DSBs), and single-stranded gaps can block progression of the DNA replicati
200 ter CTC1 disruption and at early times net G-strand growth is apparent, indicating telomerase-mediate
203 xes formed by folding of GGG(TTAGGG)3 single strands in buffered solutions containing Na(+) cations (
205 resented 16% of total 5-phosphorylated guide strands in liver, correlating with a 2.7 log10 reduction
208 ecA family of recombinases catalyzes the DNA strand invasion reaction that takes place during homolog
211 of duplex DNA necessitates that the leading strand is replicated continuously whereas the lagging st
212 replicated continuously whereas the lagging strand is replicated in discrete segments known as Okaza
213 t, second conformation wherein the last beta-strand is retracted to extend the Ser65 loop and shorten
214 y preferentially occurs at telomeric lagging strands leading to heterogeneous telomere lengths observ
221 ctured electrode array and exposed to single-stranded MLPA products and subsequently to a single stra
222 U:G mismatches is translated into the single-strand nick required for error-prone synthesis is an ope
223 Genome-wide analysis of the transcribed strand/nontranscribed strand (TS/NTS) repair ratio demon
224 of flexible polyelectrolytes, such as single-stranded nucleic acids (ssNAs), is complicated by the in
226 yses a nucleophilic attack that connects one strand of the leader-proximal repeat to the prespacer 3'
229 of FOXO protein via CRISPR-assisted, single-stranded oligodeoxynucleotide-mediated homology-directed
230 ADAPT employs an enriched library of single-stranded oligodeoxynucleotides (ssODNs) to profile compl
232 ers to the effector units, e.g., an antifuel strand or 18-crown-6-ether, reconfiguration to the origi
234 at DNA synthesis by the leading- and lagging-strand polymerases in the replisome must be coordinated
238 strand but an open plus strand (closed minus-strand RC DNA [cM-RC DNA]) was detected by this approach
239 unmethylated sequences generate local double stranded regions resulting to digestion of unmethylated
240 different aspects of RNA ranging from single stranded regions to discrete secondary or tertiary struc
241 ly sensitive detection of dsDNA based on the strand replacement of dsDNA by peptide nucleic acid (PNA
243 eotides downstream on the top and bottom DNA strands, respectively, in an NTP-hydrolysis dependent re
245 dge base on the interaction between positive-strand RNA [(+)RNA] viruses and cellular membranes that
246 nal Herpesvirus Workshop (IHW), the Positive-Strand RNA Virus Symposium (PSR), and the Gordon Researc
247 is virus (WEEV) are arthropod-borne positive-strand RNA viruses that are capable of causing acute and
248 conserved protein fold found in several plus-strand RNA viruses that binds to the small molecule ADP-
250 l host factor for many positive-sense single-stranded RNA (+RNA) viruses including human pathogens he
252 lly been used as a model to study the double-stranded RNA (dsRNA) Reoviridae family, the members of w
254 In particular, NP associates with the double-stranded RNA (dsRNA)-activated protein kinase (PKR), a w
255 hat topological structures containing single-stranded RNA (ssRNA) free of strong base pairing interac
256 okine and type I IFN responses to the double-stranded RNA analogue poly(I:C) are reduced in mouse mac
257 tivity that act in concert to convert single-stranded RNA of the viral genome to double-stranded DNA
258 With Coxsackievirus B3 (CVB3) being a single-stranded RNA virus, and the recent evidence that the NOD
263 It relies on plants stably expressing double-stranded RNAs (dsRNAs) that target essential genes in pe
266 et site, and subsequent R-loop formation and strand scission are driven by complementary base pairing
268 average ratio of 29.2% by targeting both DNA strands simultaneously with an over 98.6% coverage.
269 high-confidence lncRNAs based on analysis of strand-specific RNA-seq data from cassava shoot apices a
270 c approach with gene expression based on the strand-specific RNA-seq data from seedling, floral bud,
272 RICE proteins specifically degraded single-strand (ss) RNAs in vitro; but neither miRNAs nor miRNA*
276 erative interaction with FEN1 during lagging-strand synthesis may serve to regulate sequential strand
277 reviously-selected reagents, to prime second strand synthesis of a single-stranded DNA template and g
278 cific G-rich/G4 motif located on the lagging strand template for DNA replication and supports Pif1 fu
279 e-steering promotes an unanticipated lagging-strand template-switch mechanism during replication.
280 tially removes DNA lesions from the template strand that block translocation of RNA polymerase II (Po
282 d-coil dimers, which assemble into a helical strand that runs along the whole approximately 1 mum len
284 tices, with dye molecules coupled to the DNA strands that link the particles together, in the form of
285 to specific sites of the DNA particle-linker strands, thereby modulating dye-nanoparticle distance (t
286 capitulate that of epithelial tight junction strands, this is the first direct demonstration of the a
288 ted histidine ligands, which bridge adjacent strands to form an infinite metal-ligand chain along the
289 uses the hybridization of complementary DNA strands to model the formation of the SNARE four-helix b
290 otegravir (GSK1265744) is an HIV-1 integrase strand transfer inhibitor with potent antiviral activity
291 ent treatment guidelines recommend integrase strand transfer inhibitors (INSTIs) as components of ini
292 sis of the transcribed strand/nontranscribed strand (TS/NTS) repair ratio demonstrated that deletion
293 Residual local motions at the edges of the strands, underscored by enhanced (15)N R1rho relaxation
294 ansferase reaction during extension of a DNA strand using the complementary strand as a template.
296 we created site-specifically modified single-stranded vectors for replication in primate (COS7) or Es
297 plication of the leading and the lagging DNA strands were reported in yeast and in human cancers, but
299 erential elongation of the telomeric lagging strands, whereas telomerase positive cells exhibited sim
300 long-noncoding (lnc)RNA in the complementary strand which has cis-regulatory transcriptional control
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