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3 primate mammals, Liat1 genes of primates are subtelomeric, a location that tends to confer evolutiona
6 te postpatient cultures transcribed the same subtelomeric and central var genes, except for var2csa C
7 arasites carrying drug selectable markers in subtelomeric and central var loci and monitoring switchi
10 es that the duplication and rearrangement of subtelomeric and pericentromeric regions have functional
11 esults show that dog genes located either in subtelomeric and pericentromeric regions, or in short sy
14 tiation and replication fork movement in the subtelomeric and telomeric DNA of native Y' telomeres of
19 odes PHISTb (Plasmodium helical interspersed subtelomeric b) domain-containing RESA-like protein 1 ex
26 th reduced subtelomeric silencing, increased subtelomeric cell wall gene expression, and stress resis
27 cated in spatial proximity to the repressive subtelomeric center, and colocalization of distinct grou
28 teractions have come from the study of yeast subtelomeric chromatin and its association with the NE,
29 t at each telomere the telomeric complex and subtelomeric chromatin cooperate to form a unique higher
30 t from holo-NPCs and that it plays a role in subtelomeric chromatin organization and NE tethering.
31 y to be regulated by the organization of the subtelomeric chromatin rather than by a specific DNA ele
32 of various proteins necessary for tethering subtelomeric chromatin to the NE and the silencing of re
33 performs functionally distinct activities at subtelomeric chromatin versus the end of the chromosome,
34 In both cases, the ordered structure of the subtelomeric chromatin was disrupted, but the effect on
35 unctions at chromosome termini and at duplex subtelomeric chromatin, via separate interactions with t
42 cription of telomere repeats can initiate at subtelomeric CTCF-binding sites to generate telomere rep
43 This gross structural difference places the subtelomeric defect underlying facioscapulohumeral muscu
45 ses of the breakpoint junctions suggest that subtelomeric deletions can be stabilized by both homolog
50 ify hotspots for the telomeric deletions and subtelomeric DNA amplifications that accompany chromosom
53 ound that there is a substantial fraction of subtelomeric DNA containing restriction sites that is no
55 Here we show that Sir3 protein spreads to subtelomeric DNA in cells lacking the transcription-rela
56 hat, similar to yeast and humans, Drosophila subtelomeric DNA is evolving very differently from euchr
58 with previously reported data, reveals that subtelomeric DNA methylation controls the homeostasis of
61 been ascribed to the X-region, a segment of subtelomeric DNA that is resistant to being cut by restr
62 d association of de-ubiquitinase Ubp10p with subtelomeric DNA, as detected by chromatin immunoprecipi
63 panied by catastrophic loss of telomeric and subtelomeric DNA, high levels of end-to-end chromosome f
66 uss a potential protective role of amplified subtelomeric DNAs, which may aid capping of telomeres ma
70 he Polycomb system that assembles repressive subtelomeric domains of H3K27 methylation (H3K27me) in t
71 specific sites including pericentromeric and subtelomeric domains, is dispensable for globule formati
73 brought telomeric RNA:DNA hybrids, telomeric/subtelomeric DSBs and VSG switching frequency back to WT
74 deletions and GCRs at both interstitial and subtelomeric DSBs, but has little effect on the frequenc
76 ms of ectopic DNA repair to the formation of subtelomeric duplications and find that non-homologous e
78 the origin of and mechanism for one of these subtelomeric duplications, we compared the sequence deri
80 first possesses telomere repeats and the Y' subtelomeric element amplified together as a tandem arra
81 ed core X sequences revealed a role for this subtelomeric element in preventing telomeric recombinati
82 ence is the same at all chromosome ends, the subtelomeric elements (STEs) and level of TPE vary from
83 s subcomplement]) located at three different subtelomeric ends (1p, 6p, and 12p) whose expressions ar
84 We demonstrate here that silencing of the subtelomeric EPA loci also depends on functional Sir3p a
87 HEI10-mediated crossover increases occur in subtelomeric euchromatin, which is reminiscent of sex di
89 is transcribed from one of approximately 20 subtelomeric 'Expression Sites', but the role telomeres
91 s of chromosomal abnormalities identified by subtelomeric fluorescence in situ hybridization testing
99 ne mutations, however, have little effect on subtelomeric gene repression or genome-wide expression,
101 de that DAC1 and DAC3 play distinct roles in subtelomeric gene silencing and that DAC3 represents the
103 Rather, the data revealed upregulation of subtelomeric genes and alteration of the repressive hist
104 cete of chromatin-based silencing of natural subtelomeric genes and provides for the first time in a
108 ation of subtelomere-associated H2B, reduced subtelomeric H3K79 di-methylation, and increased binding
110 curred in humans, including the formation of subtelomeric heterochromatic caps, the hyperexpansion of
111 one modifications and piRNA transcription in subtelomeric heterochromatin (also known as telomere-ass
112 nation in regions adjacent to centromeric or subtelomeric heterochromatin and add to our understandin
114 Although many shelterin mutations affect subtelomeric heterochromatin assembly, the mechanism rem
117 res of heterochromatin but are distinct from subtelomeric heterochromatin repressed by the deacetylas
118 ining a structure consisting of a segment of subtelomeric heterochromatin that inserted into a cluste
120 ctions between shelterin subunits compromise subtelomeric heterochromatin without affecting CLRC inte
121 sequences included both repetitive gene-poor subtelomeric heterochromatin-like regions and their adja
125 tes, we see high frequencies of mutations in subtelomeric highly variable genes and internal var gene
126 y number variations, chromosomal inversions, subtelomeric hypervariation, loss of heterozygosity (LOH
130 ositively associated methylated CpG sites in subtelomeric loci (within 4 Mb of the telomere) (P < 0.0
132 ly of adhesins, which are encoded largely at subtelomeric loci, where they are subject to transcripti
133 e EPA genes, a family of adhesins encoded at subtelomeric loci, where they are subject to transcripti
137 Our results provide further evidence for subtelomeric-mediated genomic duplication and demonstrat
138 ge-scale events are not restricted solely to subtelomeric or pericentromeric regions, but also occur
140 sequence analyses reveal that pieces of the subtelomeric patchwork have changed location and copy nu
141 ns featuring Plasmodium helical interspersed subtelomeric (PHIST) domains has attracted attention, wi
142 ember of the Plasmodium helical interspersed subtelomeric (PHIST) superfamily with a calculated mass
145 lications that cause some genomic disorders, subtelomeric rearrangements do not typically have recurr
151 analysis reveals the presence of Hek2p at a subtelomeric region and HMR, its silencing effects at th
152 ng linkage disequilibrium between the distal subtelomeric region and the proximal telomere, which con
153 ts associated with terminal deletions of the subtelomeric region as well as the capture of a scramble
154 PCR fragment-length variation across the subtelomeric region indicated that the 1.4-kb distal reg
158 but is more compact and is localized to the subtelomeric region of chicken chromosome 1q, within a r
161 et of the D4Z4 macrosatellite repeats in the subtelomeric region of chromosome 4q causes facioscapulo
165 nogaster contains two distinct subdomains: a subtelomeric region of repetitive DNA, termed TAS, and a
166 is related to a 29 bp repeat present in the subtelomeric region of VSG-bearing chromosomes of T. bru
167 f the heritable variation was explained by a subtelomeric region on chromosome 6; a genome-wide assoc
168 ional changes, Ada2 occupancy increases at a subtelomeric region proximal to a SAGA-inducible gene an
171 ility, characterized by amplification of the subtelomeric region, translocation of chromosomal fragme
174 2 causes the spreading of Sir2 and Sir3 into subtelomeric regions and decreased histone H4 K16 acetyl
175 h CpG methylation density is correlated with subtelomeric regions and Giemsa-light bands (R bands).
176 e recombination near telomeres is repressed, subtelomeric regions appear to recombine with each other
183 asis of gradually elevating G+C fractions in subtelomeric regions as a consequence of biased gene con
187 acetylation and loss of histones at specific subtelomeric regions in replicatively old yeast cells, w
188 oting genome stability at the rDNA locus and subtelomeric regions in the most common human fungal pat
191 ociation with the chromosome ends extends to subtelomeric regions many kilobases internal to the term
193 udes 97 clones from 1p36, 41 clones from the subtelomeric regions of all human chromosomes, and three
194 risk for mutagenesis because they reside in subtelomeric regions of chromatin that are deficient in
198 e open reading frame), located mainly in the subtelomeric regions of the parasite's 14 chromosomes.
201 pitated with J antiserum, localized J within subtelomeric regions rich in life-stage-specific surface
202 mutation causes the spread of silencing into subtelomeric regions that are not normally silenced in w
203 factors with the telomere and propagated in subtelomeric regions through association of silencing fa
205 proach, we show that Repo-Man is enriched at subtelomeric regions together with H2AZ and H3.3 and tha
206 leosome mapping revealed that Sir binding to subtelomeric regions was associated with overpackaging o
208 ing telomere dynamics, identifying 12 unique subtelomeric regions with variable detection efficiencie
209 nd at the ribosomal DNA locus, telomeres and subtelomeric regions, are unstable sites of eukaryotic g
210 s and contractions of known gene families in subtelomeric regions, both species also were found to ha
211 not globally alter Sir2 or Sir3 occupancy in subtelomeric regions, but only led to some telomere-spec
212 nd LTR elements, segmental duplications, and subtelomeric regions, but single-copy sequences rarely b
213 d that hiPSCs lack appropriate 5hmC marks in subtelomeric regions, contributing to epigenetic variati
214 n resulted in clustering of intra- and inter-subtelomeric regions, demonstrating a novel role for SMA
215 g of the duplication events varied among the subtelomeric regions, from approximately 5 to approximat
216 TAG/TAA stop-codon replacements, deletion of subtelomeric regions, introns, transfer RNAs, transposon
217 architecture associated with centromeric and subtelomeric regions, it locally influences meiotic reco
218 htylated CpG islands was found in chromosome subtelomeric regions, suggesting a differential activity
236 - and cytosine (GC)-rich, highly recombining subtelomeric regions; low divergence states cover inner
238 normal and affected alleles (deleted for the subtelomeric repeat D4Z4) localize to the nuclear periph
239 osome-specific subtelomere sequences through subtelomeric repeat regions to terminal (TTAGGG)n repeat
240 Mb of subtelomeric DNA analyzed, 3.01 Mb are subtelomeric repeat sequences (Srpt),and an additional 2
241 origins located close to telomeres or within subtelomeric repeat sequences normally initiate late, bu
242 ole of DNMT1 in the de novo methylation of a subtelomeric repeat, D4Z4, which is lost in cells lackin
249 ully correlated, suggestive of CTD-dependent subtelomeric repression mechansims that act independentl
251 elomerase regulator Rif1 results in elevated subtelomeric RNA levels while telomere-repeat containing
254 ublic draft and finished sequences to derive subtelomeric sequence assemblies for each of the 41 gene
258 sociated genes and pseudogenes over 50 kb of subtelomeric sequence where, unusually, the telomere-pro
259 canonical structure, with 3-4 kb of a unique subtelomeric sequence, followed by several kilobases of
261 cient meiosis I segregation, we suggest that subtelomeric sequences evolved to prevent recombination
263 st genome sequences do not contain assembled subtelomeric sequences, and, as a result, subtelomeres a
264 tin at the regions adjacent to boundaries of subtelomeric sequences, which exhibit specific crossover
265 ple mutants progressively lost telomeric and subtelomeric sequences, yet grew for more than 1 year.
268 D52-dependent amplification of telomeric and subtelomeric sequences; such survivors are now capable o
269 We show that SIR3 and RIF1 are required for subtelomeric silencing in C. glabrata and that RIF1 regu
272 erphosphorylation is correlated with reduced subtelomeric silencing, increased subtelomeric cell wall
278 tological studies, provide evidence that the subtelomeric TAS region exhibits features resembling het
280 identical transcriptome phenotypes, with new subtelomeric transcription in yeast, and greatly increas
282 3K9 and H3K27 acetylation and stimulation of subtelomeric transcripts, including telomere repeat-cont
285 anism by which the parasite proteins STEVOR (SubTElomeric Variable Open Reading frame) exert changes
286 ultigene families, var, rif, and stevor (for subtelomeric variable open reading frame), located mainl
287 ction of J is also located within the silent subtelomeric variant surface glycoprotein (VSG) gene exp
288 ozoan parasite, relies upon rearrangement of subtelomeric variant surface glycoprotein (VSG) genes to
289 Pol I-mediated transcriptional switching of subtelomeric variant surface glycoprotein genes, continu
290 an reference sequence, detect many new large subtelomeric variants and demonstrate the feasibility of
291 ange, which is significantly stronger at the subtelomeric VSG loci than at chromosome internal loci.
292 mosome-internal recombination, it suppressed subtelomeric VSG recombination, and these locus-specific
294 er, Exo1 is critical for generating ssDNA in subtelomeric X repeats and internal single-copy sequence
295 type IA pathway involves an amplification of subtelomeric Y' elements, coupled with elongated and mor
297 increasing levels of single-stranded DNA in subtelomeric Y' regions, and find that the mismatch repa
298 dependent reverse transcription of mRNA from subtelomeric Y' repeats generates chimeric Y'-Ty1 cDNA.
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