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1 jannaschii PSTK distinguishes tRNA(Sec) from tRNA(Ser).
2 STK must discriminate Ser-tRNA(Sec) from Ser-tRNA(Ser).
3 NA(Sec) were crucial for discrimination from tRNA(Ser).
4 four- to fivefold excess over the endogenous tRNA(Ser).
5 such as the purine-pyrimidine base pairs of tRNA(Ser).
6 1--72 through 5--68 base pairs of the E.coli tRNA(Ser) acceptor stem with the major recognition eleme
7 quence A36A37A38 in the anticodon loop, only tRNA(Ser)AGA, tRNA(Ser)CGA, tRNA(Ser)UGA, and selenocyst
8 r-armed tRNA secondary structure, while two [tRNASer(AGN) and a second tRNASer(UCN)] will fold only i
9 rm-replacement loop-containing tRNASer(UCN), tRNASer(AGN), tRNAMet(AUA), tRNATrp, and tRNAPro genes o
12 n patient fibroblasts rendered mitochondrial tRNA(Ser(AGY)) undetectable, and markedly reduced mitoch
13 from defective CCA addition to mitochondrial tRNA(Ser(AGY)), and that the severity of this biochemica
14 addition to the non-canonical mitochondrial tRNA(Ser(AGY)), but no obvious qualitative differences i
15 o acid identity and recognition of a type II tRNA(Ser) amber suppressor from a serine to a leucine re
16 DNA sequence analysis of cDNA clones for tRNA(Ser) and 18S rRNA confirmed the expected 3'-termina
17 -loop are seen in the cocrystal structure of tRNA(Ser) and Thermus thermophilus seryl-tRNA synthetase
20 Mammalian mitochondrial tRNA(Ser(UCN)) (mt-tRNA(Ser)) and pyrrolysine tRNA (tRNA(Pyl)) fold to near
21 ich structural or sequence elements of human tRNA(Ser) are necessary for pseudouridine (Psi) formatio
23 y, carrot protoplasts transfected with human tRNA(Ser)AUC genes containing the lac operator (lacO) in
24 t in complex with the anticodon stem loop of tRNA(Ser) bound to the PsiAG stop codon in the A site.
25 traints and hence destabilizes the mutant mt-tRNA(Ser) by approximately 0.6 kcal/mol relative to wild
26 mcd2-1, and show that the mutation lies in a tRNA(Ser)(CGA), which has been modified to translate the
29 We demonstrate that for the wild-type pre-tRNA(Ser)CGA and other pre-tRNAs, Lhp1p is required for
32 38 in the anticodon loop, only tRNA(Ser)AGA, tRNA(Ser)CGA, tRNA(Ser)UGA, and selenocysteine tRNA with
33 ble loop by the 7472insC mutation reduces mt-tRNA(Ser) concentration in vivo through poorly understoo
34 e unique secondary structure of wild-type mt-tRNA(Ser) decrease the entropic cost of folding by appro
39 21 derived from four isoacceptor families of tRNASer genes, 7 from five families of tRNALeu genes, an
42 uch a distinction between the two enzymes in tRNASer identity determinants reflects their evolutionar
43 ion to the point where the ochre-suppressing tRNA(Ser) is in four- to fivefold excess over the endoge
46 ts confirm that insertion mutations lower mt-tRNA(Ser) melting temperature by 6-9 degrees C and incre
48 reover, a novel determinant for the specific tRNASer recognition was identified as the anticodon stem
49 two SerRSs do not possess a uniform mode of tRNASer recognition, and additional determinants are nec
50 tigate the requirements of these enzymes for tRNASer recognition, serylation of variant transcripts o
51 eotides at the base of the variable stem for tRNASer recognition, unlike its bacterial type counterpa
52 ntity elements into the mitochondrial bovine tRNA(Ser) scaffold yielded chimeric tRNAs active both in
53 cture of the homologous Thermus thermophilus tRNA(Ser)-SerRS complex that Cusack and colleagues repor
54 Although SerRS recognizes both tRNA(Sec) and tRNA(Ser) species, PSTK must discriminate Ser-tRNA(Sec)
58 ation of unspliced precursor RNAs of dimeric tRNA(Ser)-tRNA(Met)i, suggesting a novel nuclear role fo
59 (SerDelta); an amber suppressor in which the tRNA(Ser) type II extra-stem-loop is replaced by a conse
60 sequence analyses found a duplication of the tRNA(Ser)UCA-C47:6U gene, which was shown to cause the p
62 ed to a disproportionately large increase in tRNA(Ser)UCA-C47:6U levels in sla1-rrm but not sla1-null
65 utations investigated in human mitochondrial tRNA(Ser(UCN)) affect processing efficiency, and some af
69 exhibited approximately 75% decrease in the tRNA(Ser(UCN)) level, compared with three control cybrid
70 Nase P, was found to process a mitochondrial tRNA(Ser(UCN)) precursor [ptRNA(Ser(UCN))] at the correc
72 ion of the deafness-associated mitochondrial tRNA(Ser(UCN)) T7511C mutation, in conjunction with homo
74 ends) analyses indicated that the four-armed tRNASer(UCN) gene is transcribed into a stable RNA that
75 e that the mutation flanks the 3' end of the tRNASer(UCN) gene sequence and affects the rate but not
76 7 kbp upstream and is cotranscribed with the tRNASer(UCN) gene, with strong evidence pointing to a me
77 cates that similarity between the four-armed tRNASer(UCN) genes is only 63.8% compared with an averag
79 verage reduction of approximately 70% in the tRNASer(UCN) level and a decrease of approximately 45% i
80 he M. californianus and M. edulis four-armed tRNASer(UCN) sequences are interpreted as pseudo-tRNASer
81 ta show a sharp threshold in the capacity of tRNASer(UCN) to support the wild-type protein synthesis
82 d by the DHU arm-replacement loop-containing tRNASer(UCN), tRNASer(AGN), tRNAMet(AUA), tRNATrp, and t
83 ucture, while two [tRNASer(AGN) and a second tRNASer(UCN)] will fold only into tRNAs with a dihydrour
84 antation of these identity elements into the tRNA(Ser)(UGA) scaffold resulted in phosphorylation of t
85 His(GUG)) for Um, and tRNA(Pro(GGG)) for Am. tRNA(Ser(UGA)), previously observed as a TrmJ substrate
86 -encoded tRNAs with A36A37A38, only mt tRNAs tRNA(Ser)UGA and tRNA(Trp)UCA contained detectable i6A37
87 ([Ser]Sec)UCA level was increased and the mt tRNA(Ser)UGA level was decreased, suggesting that TRIT1
88 codon loop, only tRNA(Ser)AGA, tRNA(Ser)CGA, tRNA(Ser)UGA, and selenocysteine tRNA with UCA (tRNA([Se
89 precision values for the analyses of E. coli tRNASer(VGA) and E. coli tRNAThr(GGU), unfractionated tR
90 Dihydrouridine content of Escherichia coli tRNASer(VGA) and tRNAThr(GGU) as controls were measured
91 ; the G15-C48 tertiary "Levitt base-pair" in tRNA(Ser) was changed to A15-U48; the number of nucleoti
93 ylation of variant transcripts of M. barkeri tRNASer was kinetically analyzed in vitro with pure enzy
94 condary structures of archaeal tRNA(Sec) and tRNA(Ser), we introduced mutations into Methanococcus ma
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