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1 f the Southwest Gulf Coast region, lack this tandem repeat.
2 ncing and strain typed using variable number tandem repeat.
3 eletion of a single repeat unit from a short tandem repeat.
4 osatellites and a genic bias in all detected tandem repeats.
5 ponding to complex insertions and long short tandem repeats.
6 with accumulation of short deletions within tandem repeats.
7 sions, complex insertions and long tracts of tandem repeats.
8 hed with various classes of interspersed and tandem repeats.
9 d of slightly polymorphic 52-nucleotide (nt) tandem repeats.
10 ides increase as a function of the number of tandem repeats.
11 loop, which consists of a variable number of tandem repeats.
12 kely to have generated this novel pattern of tandem repeats.
14 icopeptide repeat modules that contain three tandem repeats (3TPRs), we identify two classes of 3TPR
16 f folded structures that can be generated by tandem repeating a simple helix-loop-helix-loop structur
17 trate that deleting one or more units of the tandem repeats abolished RocA production, reduced CovR p
18 copies of a minor variant ALOX5 promoter SP1 tandem repeat allele contributes to increased cysLT expo
21 hort interspersed element-variable number of tandem repeat-Alu (SINE-VNTR-Alu), subfamily-E retrotran
22 tial repeat), which is the largest number of tandem repeats among all the known insect mitochondrial
24 motifs, in which deletion, mutagenesis, and tandem repeat analyses of the luciferase assay identifie
26 Comparison with multi locus variable number tandem repeat analysis (MLVA) showed that although MLVA
28 related well with multilocus variable-number tandem repeat analysis (MLVA) typing data, with only thr
29 oresis (PFGE) and multilocus variable number tandem repeat analysis (MLVA) were conducted on all isol
30 ophoresis (PFGE), multilocus variable number tandem repeat analysis (MLVA), multilocus sequence typin
35 1 was genotyped using a combination of short tandem repeat analysis, triplet repeat-primed polymerase
37 echnique MLVA (multiple loci variable-number tandem repeats analysis) can identify complex infections
38 ation of multiple multilocus variable-number tandem-repeat analysis (MLVA) and P1 types throughout th
40 date has compared multilocus variable-number tandem-repeat analysis (MLVA) and whole-genome sequencin
41 strains using multiple-locus variable-number tandem-repeat analysis (MLVA) compared to typing using P
42 ibotyping and multiple-locus variable-number tandem-repeat analysis (MLVA) of selected strains was pe
44 ough PFGE and multiple-locus variable-number tandem-repeat analysis (MLVA) suggested that all isolate
45 In this study, multilocus variable-number tandem-repeat analysis (MLVA) was performed on C. diffic
48 ork for cell line annotation linked to short tandem repeat and single nucleotide polymorphism profile
49 PGR (RPGR(ORF15)), carrying multiple Glu-Gly tandem repeats and a C-terminal basic domain of unknown
50 A-forming motifs coverage by including short tandem repeats and adds key visualization tools to compa
51 osatellites and a genic bias in all detected tandem repeats and confirm that chimpanzee herpesvirus 1
53 rther classified them into groups, including tandem repeats and Staphylococcus aureus repeat (STAR)-l
55 3 distinct domains: the amino terminal, the tandem repeat, and the carboxyl terminal domain, with ea
57 ear-centromeric satellite DNAs consisting of tandem repeats, and multiple species of noncoding RNAs w
58 has evolved in enhancing promoter strength, tandem repeats, and/or expression specificity, leading t
60 based" approach in which modules composed of tandem repeats are aligned to identify repeat-specific f
65 ind that cells producing a protein with many tandem repeats are relatively resistant to killing by ma
66 of repetitive DNA (transposable elements and tandem repeats) are primarily responsible for genome siz
68 me are organised in two 4 Mbp-long arrays of tandem repeats arranged in head-to-tail fashion separate
69 Our results support the general concept that tandem repeat arrays can engage in arms-race-like strugg
70 In this study, we assess the impact of large tandem repeat arrays on the recombination rate landscape
74 ibotyped, and multiple-locus variable-number tandem-repeat assay (MLVA) subtyping was performed on cl
75 NAs, which are then redundantly encoded into tandem repeats by 'rolling-circle' reverse transcription
76 duction, the quelling pathway also maintains tandem repeats by regulating homologous recombination.
77 y rat neuronal cultures, the introduction of tandem repeats carrying the 331-369-residue Gln/Asn regi
79 vice for C. glabratathat targets polymorphic tandem repeat-containing loci has recently been develope
80 istance-conferring haplotypes carry up to 10 tandem repeat copies of a 31-kb DNA segment, and three d
81 ns in mammalian cells, which have dimeric or tandem-repeated CRDs enabling multivalency for various f
82 DAT) contains a 38-base pair variable number tandem repeat (DAT-VNTR); alleles have either one or two
85 of single nucleotide variants (SNVs), summed tandem-repeat differences (STRDs), and locus variants (L
86 mes and are composed of long tracks of short tandem repeat DNA sequences bound by a unique set of pro
88 hich bears two bacterial immunoglobulin-like tandem repeat domains and a C-terminal cell wall-anchori
89 aches primarily using antibodies against the tandem repeat domains of MUC16 (e.g., oregovomab and aba
90 ludes a modular architecture, including five tandem repeat domains, with the AIM sequence presented a
91 ribe the crystal structures of the SPRY1 and tandem-repeat domains at 1.2-1.5 A resolution, which rev
92 tors (TALEs) recognize their DNA targets via tandem repeats, each specifying a single nucleotide base
93 rain of Mmc using genome transplantation and tandem repeat endonuclease coupled cleavage (TREC) with
99 e methylation was particularly dramatic over tandem repeat families, including ribosomal DNA (rDNA) r
101 otide polymorphisms and five variable number tandem repeats from 30 candidate genes in 692 available
106 rspersed repetitive units-variable number of tandem repeats genotyping to identify mycobacterial hete
109 ains of multidomain proteins with homologous tandem repeats have divergent sequences, probably as a r
110 omposed primarily of two related families of tandem repeats, Human Satellites 2 and 3 (HSat2,3).
111 r than single-domain enzymes, they appear as tandem repeats in large polypeptides we refer to as CSRP
112 Subtelomeric repeats with characteristics of Tandem Repeats in Miniature (TRIM) elements were identif
114 ion signature composed of short deletions in tandem repeats; in the specific case of ribonucleotide-i
115 rprisingly, we find that during refolding of tandem repeats, independent of sequence identity, more t
116 enrichment of long arrays of near-identical tandem repeats, known as satellite DNAs, which offer a l
117 y transient interaction with lipid vesicles, tandem-repeat LBDs, often used as lipid biosensors, tend
118 uman X-linked macrosatellite DXZ4 is a large tandem repeat located at Xq23 that is packaged into hete
121 robust comparison of large numbers of simple tandem repeat loci; however, analysis of their variation
122 ncy of mutation at the mouse expanded simple tandem repeat locus Ms6-hm was established in DNA sample
123 lymorphism is a one-unit deletion in a three-tandem-repeat locus upstream of the rocA gene encoding a
124 The human genome contains numerous large tandem repeats, many of which remain poorly characterize
125 ailable genotypes on approximately 400 short tandem repeat markers using a general pedigree variance
126 e shown that multidomain proteins containing tandem repeats may form stable misfolded structures.
127 erspersed repetitive unit-variable number of tandem repeat (MIRU-VNTR) typing of pairs of isolates ta
128 interspersed repetitive-unit-variable-number tandem repeat (MIRU-VNTR) typing were obtained routinely
132 osis terminating at both ends with arrays of tandem repeats (mitochondrial telomeres) is replicated.
133 hly conserved and previously uncharacterized tandem repeat motifs at the C terminus, herein designate
134 ny one of these three drugs, expanded simple tandem repeat mutation frequencies were significantly el
137 n of the switch 2 domain of K-Ras encoding a tandem repeat of amino acids G60_A66dup in a child with
141 o half-life of an antibody Fab domain, and a tandem repeat of the monoFc further prolonged the half-l
145 te expansion diseases are caused by unstable tandem repeats of 3-10 nucleotides that become pathogeni
146 e primates, from macaques to humans, contain tandem repeats of a 10-residue sequence, whereas Liat1 p
148 s defined catalytic domains but contains two tandem repeats of a distinctive module of unknown functi
151 Trinucleotide repeats (TNRs) consist of tandem repeats of Gs and As and therefore are hotspots o
154 WASp homology domain 2 (WH2) nucleators, use tandem repeats of monomeric actin-binding WH2 domains to
155 cell wall protein family, we show the three tandem repeats of the CWB2 motif are essential for corre
158 NGTGGV, required for germline expression and tandem repeats of the motif YAACYGY, which enhance DUO1
159 lasmids with fewer than 16 TRs or those with tandem repeats of the MREs are maintained inefficiently,
164 associated protein 9 (dCas9) fused with four tandem repeats of the transcriptional activator VP16 (VP
165 In vertebrates, telomeres are composed of tandem repeats of the TTAGGG sequence that are bound by
166 hat a single copy of tTA(VP64) carrying four tandem repeats of the VP16 domain constitutively express
167 which carried long runs of degenerate short tandem repeats, often several kilobases in length, embed
168 Here we report a novel transfer RNA (tRNA) tandem repeat on human chromosome 1q23.3 that shows exte
169 The non-B DNA structures formed by short tandem repeats on the nascent strand during DNA replicat
170 red from personal genomes by profiling short tandem repeats on the Y chromosome (Y-STRs) and querying
172 R scaffold is a long, single-stranded DNA of tandem repeats, originating from the rolling circular am
173 f dopamine transporter SLC6A3 40 bp variable tandem repeat polymorphism (VNTR) and for 6/6 homozygote
174 +3A>T mutation, which extends from the short tandem repeat polymorphism D6S282 to c.1013G>A (rs434102
175 alysis, we associated the ALOX5 promoter SP1 tandem repeat polymorphism genotype (rs59439148) with as
176 Secondarily, variation at a variable number tandem repeat polymorphism in the dopamine transporter g
177 nts without the 10-repeat allele of the DAT1 tandem repeat polymorphism possess an enhanced attention
178 ought to determine if the ALOX5 promoter SP1 tandem repeat polymorphism was associated with changes i
179 whereas the thymidylate synthase rs34743033 tandem repeat polymorphism was predictive of stomatitis
180 ze the effects of the 3'-UTR variable-number-tandem-repeat polymorphism of the gene (DAT1, SLC6A3) en
181 were genotyped for two putatively functional tandem repeat polymorphisms of the dopamine transporter
187 es a type 1 secretion (T1S) system to export tandem repeat protein (TRP) effectors and demonstrated t
189 d activation was induced by three ehrlichial tandem repeat protein (TRP) effectors, with TRP120 induc
190 computational methods for de novo design of tandem repeat protein architectures driven purely by geo
193 mutagenesis and exploiting the simplicity of tandem-repeat protein structures, we delineate a network
194 ently we have determined that E. chaffeensis tandem repeat proteins (TRPs) are type 1 secreted effect
195 ly, molecular interactions of E. chaffeensis tandem repeat proteins 47 and 120 (TRP47 and -120) and t
197 on of a gap by two Top1 cleavage events, the tandem repeat provides complementarity that promotes rea
198 ized by the presence of a 35-bp mtDNA D-loop tandem repeat proximal to the 5' end, more than 95% of s
200 of the control region is made up of a large tandem-repeat region, which has a novel pattern not prev
203 oline-rich proteins contain large regions of tandem repeats, relatively young proteins like histatins
206 tomate characterization of local centromeric tandem repeat sequence variation we have designed Alpha-
208 ecursor is glycosylated and has a 10-residue tandem repeating sequence xxCxGxYCxG, with regularly spa
212 neering target RNAs with large insertions of tandem repeat sequences that are bound by protein-based
214 oted recruitment of the Daxx/Atrx complex to tandem repeat sequences, including retrotransposons and
215 rspersed repetitive units-variable number of tandem repeat signature) lineage 2/Beijing MDR strain im
217 tic (ME) separation for rapid forensic short tandem repeat (STR) forensic profiling in a single dispo
218 s (UAE) were typed across 15 autosomal short tandem repeat (STR) loci (D8S1179, D21S11, D7S820, CSF1P
219 Zambia and additionally genotyped four short tandem repeat (STR) loci that flank the lactase enhancer
226 e authentication, but only one method (short tandem repeat [STR] profiling) has been the subject of a
234 genome-wide SNPs and the other with 13 short tandem repeats (STRs) used in forensic applications-we f
235 00 biallelic markers and 19 chromosome short tandem repeats (STRs) were genotyped to produce a high-r
236 ites are multi-allelic and composed of short tandem repeats (STRs) with individual motifs composed of
239 ome-wide survey of the contribution of short tandem repeats (STRs), which constitute one of the most
240 demonstrated that galectin (Gal)-8, from the tandem-repeat subgroup, exerts two well-defined effects
241 rminal p50 domain is sufficient to stimulate tandem repeat synthesis and bridge the RNP catalytic cor
242 catalytic core has a relatively low rate of tandem repeat synthesis but high processivity of repeat
244 he analysis of a model protein of a spectrin tandem repeat that exemplified an intuitive stability pr
245 a concatemer containing tens to hundreds of tandem repeats that are complementary to the circular te
246 e we identified further binding sites in the tandem repeats that are found within the long TIRs.
248 itrations, we show that binding of the FF4-6 tandem repeat to the PCTD requires simultaneous phosphor
252 ng an important source of genetic variation, tandem repeats (TRs) remain poorly studied due to techni
256 and to spoligotyping and variable number of tandem repeats typing before treatment and after recurre
260 -4.90), and, repeat variants variable number tandem repeat (VNTR) 4 DRD4 (odds ratio: 1.66; confidenc
261 w that two PER3 mutations, a variable number tandem repeat (VNTR) allele and a single-nucleotide poly
263 ions, including the promoter variable number tandem repeat (VNTR) and 2 single nucleotide polymorphis
265 nts with mutations in the variable number of tandem repeat (VNTR) domain of carboxyl ester lipase (CE
266 ified in the AKT1 gene a new variable number tandem repeat (VNTR) marker associated with baseline str
267 ation Study (GWAS) explosion Variable Number Tandem Repeat (VNTR) polymorphism exploration has seemin
268 fect of a newly characterized variant number tandem repeat (VNTR) polymorphism in AKT1 [major alleles
269 racting effects of APZ and a variable number tandem repeat (VNTR) polymorphism in DAT1/SLC6A3 (the ge
270 his region are linked with a variable number tandem repeat (VNTR) polymorphism in the first exon of A
271 nts were typed using a novel variable-number tandem repeat (VNTR) scheme and an automated repetitive-
272 5 kb), GC-rich (>80%) coding variable-number tandem repeat (VNTR) sequence in the MUC1 gene encoding
273 ndependent study reporting a variable number tandem repeat (VNTR) within the same PCSK6 locus to be a
274 me increased resolution over variable number tandem repeat (VNTR)-based clustering, it was insufficie
276 focused on a 40-base pair variable number of tandem repeats (VNTR) polymorphism located in the 3'-unt
277 gene (3'-UTR) and intron8 variable number of tandem repeats (VNTR) polymorphisms of the DAT (SLC6A3)
279 ecently developed multilocus variable-number tandem-repeat (VNTR) analysis (MLVA) method for the mole
281 (WGST), (ii) multiple-locus variable-number tandem-repeat (VNTR) analysis (MLVA), (iii) clustered re
283 n humans, a primate-specific variable-number tandem-repeat (VNTR) polymorphism (4 or 5 repeats 54 nt
287 MUC1 is characterized by variable number tandem repeats (VNTRs) that bind the lectin galectin-3;
289 1B -31C/T (rs1143627) and IL1RA 86-base-pair tandem repeat were analyzed in 871 patients (DF = 384, D
292 lite specific genotyping method, we analyzed tandem repeats, which are known to be highly variable wi
293 ic DNA of vertebrates consists of d(TTAGGG)n tandem repeats, which can form quadruplex DNA structures
295 h showed multiple insertions or deletions of tandem repeats within this locus for a number of specime
297 ic pedigree searches with Y-chromosome short tandem repeat (Y-STR) profiling in large-scale crime inv
298 served open reading frame composed solely of tandem repeats, yet it is still unclear why cells utiliz
299 ene encodes a protein with a highly variable tandem-repeat zinc finger (ZF) DNA-binding domain that p
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