ライフサイエンスコーパス: taxonomy

1 nnotation on the full breadth of prokaryotic taxonomy.

2 eomes that was consistent with virus or host taxonomy.

3 and Related Health Problems, Tenth Revision taxonomy.

4 r testing the supremacy of the assigned LCA* taxonomy.

5 symbiosis, irrespective of host clade age or taxonomy.

6 ild species, even when controlling for plant taxonomy.

7 phylogeny was instead dominated by bacterial taxonomy.

8 gs are distributed in the context of species taxonomy.

9 rtant discrepancies with the phenotype-based taxonomy.

10 published phylogenetic trees mapped to this taxonomy.

11 s should be unified into an all-encompassing taxonomy.

12 tric assessments in nursing map onto the new taxonomy.

13 studies of microbial diversity and bacterial taxonomy.

14 eadth of virus evolution and confounds virus taxonomy.

15 n examining species population structure and taxonomy.

16 single-cell genomic studies) to the LoClass taxonomy.

17 s and merges them into an improved consensus taxonomy.

18 s reliability, and align it with the natural taxonomy.

19 ues [1] provide another viewpoint on giraffe taxonomy.

20 ed from molecular phylogenetic approaches to taxonomy.

21 ncer-related references from PubMed into the taxonomy.

22 existing visualization space revealed by our taxonomy.

23 major changes in our understanding of legume taxonomy.

24 chieving a full understanding of collembolan taxonomy.

25 Accurate species delimitation underpins good taxonomy.

26 ournal editors and others in regard to viral taxonomy.

27 cts SCP-SCP relationships beyond the current taxonomy.

28 chemes for parasites and changes in parasite taxonomy.

29 c given the lack of standardised methods and taxonomy.

30 limit of infinite resolution of occupational taxonomies.

31 classification than is provided by existing taxonomies.

32 What do you think of when you think of taxonomy?

33 re typically found in each category in large taxonomies?

34 We developed CONSTAX (CONSensus TAXonomy), a Python tool that compares taxonomic classif

35 such identifications are linked to bacterial taxonomy, a complicated and changing discipline that dep

36 morphospecies allows the TNRS to standardize taxonomy across a broad range of active and legacy datas

37 ssemblage delineated by geography instead of taxonomy (all the species in a region regardless of clad

38 trials across diseases using a standardized taxonomy allowing a comparison between global health res

39 The taxonomy also enables prediction of conflicts between pa

40 rast to the high diversity of metabolism and taxonomy among planktonic archaea.

41 We developed a novel taxonomy among young adults (</=55 years) with AMI enrol

42 tified associations of 9 loci with microbial taxonomies and 33 loci with microbial pathways and gene

43 We review taxonomies and phylogenies of other large savannah mamma

44 ources: (i) a comprehensive global reference taxonomy and (ii) a database of published phylogenetic t

45 y across seasons and latitudes with plankton taxonomy and activity, and following the seascape of oce

46 The results are grouped by taxonomy and can be browsed by organism, taxonomic group

47 essing questions in biogeography, evolution, taxonomy and conservation of the cryptic subterranean fa

48 We created an extensive Hallmarks of Cancer taxonomy and developed automatic text mining methodology

49 The study underscores the importance of taxonomy and distinguishing the many species and subspec

50 The taxonomy and domain architecture representations can be

51 deeper understanding of their basic biology, taxonomy and evolution, as well as their diverse roles i

52 cquired genes to better understand microbial taxonomy and evolution.

53 ganisms for insight into their nomenclature, taxonomy and evolution.

54 ction to a novel, more biologically oriented taxonomy and from genome diagnostics to trial design.

55 To date, however, microbiome taxonomy and function have mostly been studied independe

56 d assembly, principal coordinate analysis of taxonomy and function, and support for metadata.

57 e patterns transcend differences in size and taxonomy and have thus evolved multiple times, suggestin

58 by phylogenetic relatedness to humans, host taxonomy and human population within a species range-whi

59 e appreciate and endorse Kline's ethological taxonomy and its application.

60 rne viruses will have implications for viral taxonomy and may provide insight into tick-transmitted d

61 s and specific populations to understand the taxonomy and metabolism both spatially and temporally ac

62 cludes a collection of articles on bacterial taxonomy and metagenomics, which includes updates on the

63 ting future research directions based on our taxonomy and motivated by the comments received by our d

64 Taxonomy and nomenclature of this genus are not entirely

65 ation gathered from corresponding Wikipedia, taxonomy and ontology resources.

66 mplicates our understanding of early hominin taxonomy and phylogenetic relationships.

67 mental microbiology, nucleic acid chemistry, taxonomy and phylogenetics.

68 bioarchaeology, epidemiology, microbiology, taxonomy and population genetics.

69 The Structure Integration with Function, Taxonomy and Sequences resource is a close collaboration

70 ), we also construct a TAG consisting of the taxonomy and source trees from a recent comprehensive bi

71 The core genome provides stable taxonomy and species lists, but phenotypes reflect the m

72 n was largely consistent with accepted viral taxonomy and suggested that (i) 264 new viral genera wer

73 his specimen is described in detail, and the taxonomy and systematics of Late Jurassic pliosaurids is

74 Despite their importance, comparisons of the taxonomy and traits of successful weeds often focus on a

75 Comparisons between eDNA, community DNA, taxonomy and UK species abundance data further show sign

76 ion, mapping of genomes to both NCBI and RDP taxonomies, and refined tools for querying and analyzing

77 lize knowledge sources such as dictionaries, taxonomies, and semantic networks, and include path find

78 for the development of a more sophisticated taxonomy, and an appreciation of ALS as the breakdown of

79 t virophage databases, help refine virophage taxonomy, and establish baseline ecological hypotheses a

80 families at multiple levels in the resulting taxonomy, and it annotates families' conservation, phylo

81 es on tree leaves and the functional traits, taxonomy, and phylogeny of their plant hosts.

82 icult to assign reads at the lowest level of taxonomy, and reads are typically assigned to taxonomic

83 ta on the usability of a standard leadership taxonomy, and the related MPS questionnaire, on a nursin

84 ol genes within disease subtrees in the MeSH taxonomy, and we demonstrate that such pooling improves

85 ted input file and outputs a QIIME-formatted taxonomy-annotated BIOM file for an entire MiSeq run of

86 of exogenous RNAs and summarization based on taxonomy annotation.

87 Hierarchical taxonomies are ubiquitous, ranging from the classificati

88 ate consequences of misspelled names and bad taxonomy are erroneous scientific conclusions and faulty

89 Significant differences in taxonomy are observed among the four different next-gene

90 Our results identify taxonomy as the major determinant of fixation, with P (a

91 We support the revision of current lion taxonomy, as recognition of a northern and a southern su

92 Taxonomies assigned with the Protist Ribosomal Reference

93 ustered into operational taxonomic units and taxonomy assigned via the Human Oral Microbiome Database

94 y remains a considerable barrier to accurate taxonomy assignment and alpha-diversity assessment for m

95 Our results demonstrate that independent taxonomy assignment tools classify unique members of the

96 al taxonomic units, contaminant removal, and taxonomy assignments.

97 riation of the occupational frequency across taxonomies at different resolutions in a way analogous t

98 In other types of cancer, taxonomy based on normal cell phenotypes has been extrem

99 mplicon sequence data can be combined at the taxonomy-based level to assess bacterial community struc

100 tains ancillary information (e.g. ecoregion, taxonomy, biogeography, etc.) that facilitates interpret

101 lecular signatures adds complexity to tumour taxonomy but is key to personalising diagnosis, treatmen

102 It correlates significantly with the current taxonomy, but the observed discrepancies reveal both (1)

103 We address the current state of integrative taxonomy by using as a case study an international proje

104 osystems that are rather dissimilar in their taxonomy can be considerably more similar at the metabol

105 The final VIRGO taxonomy classified 2802 study participants as follows:

106 ject were aligned against the NCBI bacterial taxonomy database and the Comprehensive Antibiotic Resis

107 The NCBI Taxonomy Database now includes annotation of type materi

108 Pfam, SCOP, CATH, GO, InterPro and the NCBI taxonomy database.

109 ed due to the scheme-dependent nature of the taxonomies describing complex systems.

110 s review briefly presents current tospovirus taxonomy, diversity, molecular biology, and cytopatholog

111 unigrams, but adding concepts from the UMLS taxonomy does not improve the performance of using only

112 s used in a tree and taxa in a single common taxonomy dramatically improves the ability of other rese

113 Additionally, a review on the history, taxonomy, ecology, and medicinal application of differen

114 ckdrop of biogeographic provinces defined by taxonomy, endemism, and species composition.

115 ic community is losing valuable resources as taxonomy experts age and retire, and funding for morphol

116 motion, and cognitive control, a brain-based taxonomy for mental disease is still lacking.

117 to complement and enhance standard molecular taxonomy for microalgae.

118 ein flexibility form the basis of a rigorous taxonomy for the description and classification of prote

119 tein analysis offers a unique, complementary taxonomy for understanding CTC biology and ascertaining

120 The tool is taxonomy-free and depends only on k-tuples.

121 ng several k-mer lengths for predicting host taxonomy from among approximately 32 000 prokaryotic gen

122 new and revised clinically relevant parasite taxonomy from January 2012 through December 2015.

123 es studied in registered trials by using the taxonomy from the GBD 2010 study.

124 menon exists across multiple levels of viral taxonomy, from the Baltimore classification viral groups

125 NA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain

126 NA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain

127 NA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain

128 sts to an off-line computation by creating a taxonomy/genome index that supports scalable metagenomic

129 , which links to related information such as taxonomy, genomes, protein sequences and structures, and

130 ), markers, trait loci, genetic maps, genes, taxonomy, germplasm, publications and communication reso

131 The SORT (Strength of Recommendation Taxonomy) grade was used to evaluate the quality and str

132 The SORT (Strength of Recommendation Taxonomy) grading scale was used in evaluating the body

133 ndation for the development of a new disease taxonomy grounded in biology, rather than clinical prese

134 Scorpion taxonomy has been difficult with morphological character

135 girostris, but over the past fifty years the taxonomy has been revisited multiple times; currently th

136 Along these lines, Moffitt's developmental taxonomy has emerged as a theory well supported by empir

137 less, the general application of integrative taxonomy has not been without issue, revealing challenge

138 that biological factors inherited from plant taxonomies have a significant effect on controlling leaf

139 Scorpion systematics and taxonomy have recently shown a need for revision, partia

140 In line with Kline's taxonomy, highlighting teaching as an array of behaviors

141 The neuropathologic features, taxonomy, history, role of biomarkers in diagnosis, and

142 MetaCRAM integrates algorithms for taxonomy identification and assembly, and introduces par

143 This taxonomy identifies three general classes of antecedents

144 Our study shows how ecology can confound taxonomy if interspecific competition constrains size di

145 nditions are not described with standardized taxonomies in registries.

146 tures predominate in early visual cortex and taxonomy in lateral occipital and ventral temporal corti

147 In all cases, including taxonomy in models substantially improved model performa

148 to consider the incomplete nature of bivalve taxonomy in quantitative studies of its diversity.

149 ribosomal RNA genes as molecular markers of taxonomy in surveys of microbial communities.

150 Formalization of integrative taxonomy in the past decade has provided a framework for

151 are standardized against multiple reference taxonomies, including the Missouri Botanical Garden's Tr

152 We developed a novel taxonomy-independent approach called MBBC (Metagenomic B

153 Each ATGC is a taxonomy-independent cluster of 2 or more completely seq

154 assigned to both taxonomic structures and to taxonomy-independent clusters.

155 sets, MBBC outperformed two state-of-the-art taxonomy-independent methods, in terms of the accuracy o

156 ht calibration algorithm to consolidate NCBI taxonomy information in concert with unbiased sampling o

157 in the compressed domain via maintenance of taxonomy information.

158 human biofluids as well as detailed chemical taxonomies, informative chemical ontologies and a large

159 A threat taxonomy is a novel way of classifying and predicting th

160 A taxonomy is a standardized framework to classify and org

161 h old-fashioned conceptions to the contrary, taxonomy is alive today although constantly struggling f

162 e that a more nuanced model based on Bloom's taxonomy is better suited to EHL and to future research

163 Our taxonomy is designed to support the development and desi

164 A new measurement taxonomy is presented and explained.

165 A similar taxonomy is proposed for neuropsychiatric diseases in wh

166 This taxonomy is suited to specifying symptoms in terms of un

167 ersity with the global reptile diversity and taxonomy known in 1980.

168 health improvements require knowing at which taxonomy level interventions should be aimed.

169 er when the microbiota are classified at one taxonomy level, not multiple.

170 Gut microbiota can be classified at multiple taxonomy levels.

171 at identifies important features at multiple taxonomy levels.

172 This taxonomy makes it easier to understand trends in payment

173 the five forms of teaching presented in the taxonomy may constitute exaptations rather than adaptati

174 A threat taxonomy may improve analysis of critical events with su

175 provides guidelines for how an improved DoC taxonomy might be developed.

176 cords with a variety of other data including taxonomy nodes, genomes, protein structures, and biomedi

177 We used a grounded theory approach to build taxonomies of "discursive" (argument-based) and "instrum

178 influence marketing regulations and develops taxonomies of 1) industry strategies and tactics and 2)

179 pain, providing a basis for new, brain-based taxonomies of affective processes.

180 evision: Neuroscientists should revise their taxonomies of cognitive constructs on the basis of brain

181 far more diverse than suggested by existing taxonomies of corporate political activity.

182 ed across jurisdictions, suggesting that the taxonomies of industry tactics and arguments developed i

183 Among many results, we generate taxonomies of states and cities based on their similarit

184 ential significance for the future molecular taxonomy of AD.

185 nderlying endotypes are identified and a new taxonomy of airway diseases is generated.

186 vances that have allowed for a more accurate taxonomy of APC subsets found in both mouse and human sk

187 provided new insights into the phylogeny and taxonomy of ascaridomorph nematodes.

188 on power is realized by generating consensus taxonomy of available classifiers with CONSTAX.

189 Comparison of the taxonomy of bacterial species that harbor type II CRISPR

190 This comprehensive taxonomy of BMC loci, based on their constituent protein

191 Cancer Genome Atlas (TCGA) and the Molecular Taxonomy of Breast Cancer International Consortium (META

192 The Cancer Genome Atlas (TCGA) and Molecular Taxonomy of Breast Cancer International Consortium (META

193 It used the Molecular Taxonomy of Breast Cancer International Consortium (META

194 =171), Uppsala cohort (n=249), and Molecular Taxonomy of Breast Cancer International Consortium [META

195 ODE data, prognostic prediction in Molecular Taxonomy of Breast Cancer International Consortium and T

196 , this Series paper discusses a possible new taxonomy of COPD, the role of endotypes and associated b

197 seq, we provide the first detailed molecular taxonomy of distinct cell types in the amygdala.

198 A key challenge is to develop a valid taxonomy of DP that will facilitate many aspects of rese

199 step in this process, we have constructed a taxonomy of IFES archetypes by using exploratory data an

200 and how her taxonomy of teaching maps onto a taxonomy of learning.

201 These discoveries have led to a new taxonomy of malignant diseases based upon clinically rel

202 tion provides insight into the diversity and taxonomy of mycoviruses and coevolution of mycoviruses a

203 acy of disease diagnosis, define a molecular taxonomy of myeloid malignancies, refine prognostic and

204 The complete taxonomy of MyoV's load-dependent stepping pathways, and

205 The revealed features delineate a taxonomy of N-linked glycan-glycan interactions.

206 ng enteroendocrine cells and constructed the taxonomy of newly identified subtypes, and distinguished

207 rate in the nitrogen cycle and human health, taxonomy of nitrate reductases, assimilatory and dissimi

208 We provide background on the current taxonomy of Nocardia, with a focus on clinically relevan

209 an evolutionary framework to Moffitt's dual taxonomy of offending.

210 We constructed a cellular taxonomy of one cortical region, primary visual cortex,

211 A simple taxonomy of Phi-measures is presented where they are eac

212 s shortcomings that characterize the current taxonomy of postcomatose disorders of consciousness (DoC

213 o key computational quantities that inform a taxonomy of potential disease mechanisms.

214 In this article, we propose a taxonomy of prospection to initiate the important and ne

215 rocesses is a well-defined categorization or taxonomy of psychological processes and their interrelat

216 ructing a biologically informed, data-driven taxonomy of psychological processes.SIGNIFICANCE STATEME

217 iewers, I argue that, although reforming the taxonomy of psychology will lead to great insights in th

218 g functional diversity and interrogating the taxonomy of psychology; describe the ways in which neura

219 nships in the Indian Ocean by predicting the taxonomy of putative host genera, with Prochlorococcus,

220 This synthesis provides the foundation for a taxonomy of putative types of dysfunction, which cuts ac

221 re dynamics mathematically and established a taxonomy of seizures based on first principles.

222 scovery tool, we find a unexpectedly diverse taxonomy of sequences that are just as membrane-active a

223 e metrics reported as well as the number and taxonomy of strains examined.

224 A simple taxonomy of study designs includes randomized controlled

225 Here, we present taxonomy of tasks that are regularly performed by resear

226 Kline argues for an expanded taxonomy of teaching focusing on the adaptive behaviors

227 ne's insights, we need to understand how her taxonomy of teaching maps onto a taxonomy of learning.

228 The existing taxonomy of terrorist bombings, which distinguishes expl

229 historical nomenclature and the evolutionary taxonomy of the Canini tribe.

230 Recently, the taxonomy of the genus has been reevaluated, and the most

231 The taxonomy of the genus is not yet resolved and, in order

232 dendrogram shows consistency with the viral taxonomy of the ICTV and the Baltimore classification of

233 The molecular taxonomy of the M. terrae complex causing tenosynovitis

234 A taxonomy of the oligomer species based on beta-sheet sta

235 The conservation status and taxonomy of the three gadfly petrels that breed in Macar

236 tivated organisms provides clues on both the taxonomy of their producers and the redox processes thes

237 The origin and taxonomy of these enigmatic camelids is unclear and cont

238 These new compounds help us postulate a new taxonomy of these materials.

239 s long been in disarray with the genus level taxonomy of this group remaining artificial, species cri

240 iomyopathies, influencing the definition and taxonomy of this important chapter of cardiovascular dis

241 rent progress in elucidating the biology and taxonomy of this important group is rapid and promises a

242 V-A using current International Committee on Taxonomy of Viruses (ICTV) assignment criteria.

243 ce hosted by the International Committee for Taxonomy of Viruses (ICTV) that maintains and regularly

244 As the taxonomy of viruses is not uniformly defined, viral prot

245 search, but we are far from having an agreed taxonomy or factor structure of relevant processes.

246 lights the potential benefits of integrative taxonomy, particularly simultaneous use of molecular/geo

247 cal characteristics according to the current taxonomy, photographed, and then used to determine the s

248 Similarly taxonomy, population and conservation genetics as well a

249 e considered when undertaking an integrative taxonomy project.

250 practical challenges facing modern microbial taxonomy, provide an overview of complexities of classif

251 Functional group taxonomy provides a powerful conceptual framework to cla

252 Despite substantial differences in the taxonomies (relative to 2012), the patterns of lineage r

253 vior, and genetics, and aspects of great ape taxonomy remain in flux.

254 o etiology and its potential contribution to taxonomy revision are described, particularly within the

255 ssessed using the Strength of Recommendation Taxonomy scale.

256 s into account the hierarchical and the flat taxonomy similarity between function labels, and defines

257 patient-centered Strength of Recommendation Taxonomy (SORT) method to evaluate and grade the quality

258 ability atlas" and the creation of a genomic taxonomy stratified by tumor type and oncogenic pathway

259 lgorithm popularized by MEGAN, and that LCA* taxonomy strikes a balance between specificity and confi

260 DNF taxonomy succeeded in identifying pertinent and novel dr

261 n the Venn diagram, and includes a graphical taxonomy summary, alpha diversity metrics, Principal Coo

262 tids has provided comparative information on taxonomy, synonymy, and character-state differentiation.

263 ration of whole-genome data into the current taxonomy system can provide comprehensive information fo

264 istently more accurate in identifying contig taxonomy than the lowest common ancestor algorithm popul

265 It is challenging, however, to generate taxonomies that fulfill the essential criteria of being

266 Network Fusion (DNF), to infer scalable drug taxonomies that rely only on basic drug characteristics

267 lth fields, to present a revised measurement taxonomy that builds upon COSMIN, and to explore the ext

268 with the aims of developing a more inclusive taxonomy that could distinguish unique clinical phenotyp

269 We propose a more inclusive taxonomy that could serve as a framework for understandi

270 d the most common techniques and developed a taxonomy that instructively reflects their assumptions a

271 sorder and introduce a new protein structure taxonomy that is based on quantifiable metrics of a prot

272 us and unconscious goals is rooted in a folk-taxonomy that is likely to inhibit progress in cognitive

273 19), the father of taxonomy, "The first step in wisdom is to know the thing

274 Carolus Linnaeus ( 1 , p. 19), the father of taxonomy, "The first step in wisdom is to know the thing

275 generally consistent (assignment of the same taxonomy to a given OTU) across datasets and ranks; a sm

276 significance in research areas ranging from taxonomy to bioengineering.

277 NCBI Taxonomic Database hierarchy to assign taxonomy to contigs assembled from environmental sequenc

278 We then use this taxonomy to delineate potential governance challenges an

279 We quantitatively examined taxonomy to determine if certain genera are overrepresen

280 on on gene function, phylogeny and microbial taxonomy to facilitate downstream biological interpretat

281 using the behaviour change techniques (BCT) taxonomy to identify the specific behaviour change techn

282 l selection technique that uses a predefined taxonomy to organize the large pool of possible predicto

283 We then propose a taxonomy to organize these various general theories and

284 lels in functional capacity and higher level taxonomy to those of terrestrial herbivores.

285 We compared our trees to the NCBI taxonomy, to trees based on concatenated alignments, and

286 ith previous findings at higher ranks of the taxonomy tree, provide accurate estimation of taxonomic

287 eir estimation accuracy to high ranks of the taxonomy tree.

288 n be browsed by organism, taxonomic group or taxonomy tree.

289 reads were assignable to 29,776 operational taxonomy units (OTUs) and, in turn, to 20 phyla and 273

290 s thus clear that SSU rRNA based operational taxonomy units, even at the most stringent cut-off can r

291 nt clinically determined periodontal disease taxonomies, upon replication and mechanistic validation

292 d to assign microbial phylogeny and putative taxonomy using >400 proteins optimized from among 3,737

293 Integrative taxonomy was applied to the genus Protaphorura (Collembo

294 n about an updated procedure, as traditional taxonomy was not primarily designed to be used for proti

295 inkage clustering of these pairs to existing taxonomy, we observed that nearly 18% of all prokaryotic

296 geriatric examination for computer assisted taxonomy), which were then used to estimate dementia pre

297 Our revised taxonomy will enable more accurate functional and develo

298 Epileptor and the seizure taxonomy will guide future modeling and translational re

299 Severing the commitment to this taxonomy would allow Huang & Bargh (H&B) to consider a w

300 ta on the usability of a standard leadership taxonomy (Yukl et al., 2002), and the related MPS questi