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1 racil is reduced under similar conditions to thymine.
2 le blue redox probe conjugated to a modified thymine.
3 redox active probe conjugated to a modified thymine.
4 bound by the TALE (the N0 base) should be a thymine.
5 dation of A/T-rich DNA leads to mutations at thymine.
6 AID) to deaminate 5-methylcytosines (5mC) to thymine.
7 e de novo biosynthesis of the DNA nucleotide thymine.
8 ractions is adenine > cytosine >/= guanine > thymine).1 Since the degree of gold-DNA affinity interac
9 motif was identified with a highly conserved thymine (-14) and an AT-rich region in the middle betwee
10 ntrinsic preference for cytosine preceded by thymine (5'-TC) in single-stranded DNA substrates, where
16 ences containing 10 deoxy-ribonucleotides of thymine, adenine, cytosine, or guanine results in the gr
17 asured by the slide parameter in the central thymine-adenine base pairs; we also detect 'dynamic' def
18 rresponding glycal with in situ persilylated thymine afforded the beta-iodonucleoside exclusively tha
22 d established cell-tracking methods based on thymine analog cell labeling and developed tailored math
23 nd 5-hydroxymethylcytosine (5hmC) as well as thymine and 5-hydroxymethyluracil (i.e., the deamination
24 d 3 novel steps to obtain N2'-functionalized thymine and 5-methylcytosine amino-LNA phosphoramidites
25 DG) toward duplex DNA substrates harboring a thymine and 5-substituted cytosine derivatives when pair
28 We also show that cleavage of thymidine to thymine and deoxyribose-1-phosphate by the host thymidin
31 for the generation and isolation of various thymine and thymidine 5,6-epoxides from the correspondin
32 d photoelectron spectroscopy is performed on thymine and thymidine in aqueous solution to study the e
33 ely 20%) for guanine over adenine, cytosine, thymine and uracil, but this selectivity is extraordinar
34 demonstrate that SLC25A33 transports uracil, thymine, and cytosine (deoxy)nucleoside di- and triphosp
36 would provide a preference for cytosine over thymine, and the latter one could explain the E446D pref
37 linked to deoxyribose, to the 5-position of thymine, and to a hexynyl linker, in addition to an olig
38 onditions, nucleobases of adenine, cytosine, thymine, and uracil could be detected with limits approa
39 atic rings and attached methyl groups (as on thymine) are particularly favorable, as previously obser
40 initially located on adenines, localizes on thymine as the proton is lost from the methyl group, dem
41 n bands for phenylalanine at 1001 cm(-1) and thymine at 747 cm(-1) Raman bands), were used to quantif
42 demonstrate the concept using the nucleobase thymine at the oxygen K-edge, and unambiguously show tha
43 ned with mutating the continuous sequence of thymines at position 4 to cytosine or guanine significan
44 The AR9 nvRNAP requires uracils rather than thymines at specific conserved positions of late viral p
46 irions up to 0.7 mum in diameter and adenine-thymine (AT)-rich genomes of up to 1.25 Mb encoding a th
48 find that short minimum loop length and the thymine base are two main factors that lead to high GQ f
49 tonated at N3, one-electron oxidation of the thymine base by Cl(2)(*-) at ca. 155 K results in format
50 , calculations predict that the deprotonated thymine base has a lower energy barrier (ca. 6 kcal/mol)
54 showing that installation of a 2-aminopurine-thymine base pair at the cross-linking site produced hig
56 of deuterium substitution at C5' and on the thymine base, that is, specifically employing [5',5"-D,D
62 share the feature that 5-methylcytosine and thymine both have a methyl group in the same position, 5
64 e 5-methylcytosine is prone to conversion to thymine by deamination, the methylation of this cytosine
65 of peptides conjugated to the C5 position of thymine by human translesion synthesis polymerases leads
67 i stacking and an Au...O contact involving a thymine carbonyl group, resolving the ambiguity of conve
68 41A mutant produces TpT via an unprecedented thymine cation radical reduction (proton-coupled electro
69 lfur substitution of a carbonyl group in the thymine chromophore at position 2 or 4 results in a sign
70 toms in the exocyclic carbonyl groups of the thymine chromophore by sulfur atoms results in a remarka
72 A due to the formation of the thymine-Hg(2+)-thymine complex, which holds the Hg(2+) ions in proximit
75 In the reactions, additional nucleobases (thymine, cytosine, adenine, or guanine) were attached to
76 culated the electronic excitation spectra of thymine, cytosine, and adenine stacked dimers with ab in
77 onates with the natural nucleobases adenine, thymine, cytosine, and guanosine has been performed.
78 ibacterial and chemotherapeutic drugs elicit thymine deficiency, a mechanistic understanding of this
79 Under these growth conditions, accelerated thymine depletion is the primary trigger of the processe
83 m for the low repair quantum yield of flavin-thymine dimer adducts is the short-lived excited flavin
85 lineC/C-C stretch vibrations) of cyclobutane thymine dimer and thymine dinucleotide radical anion, th
86 ms error-free bypass of the 8-oxoguanine and thymine dimer DNA lesions, though with a 10(3) and 10(2)
88 PL) repairs 5-thyminyl-5,6-dihydrothymine, a thymine dimer that is also called the spore photoproduct
89 A by converting two adjacent thymines into a thymine dimer which is potentially mutagenic, carcinogen
90 d in UV-irradiated bacterial endospores is a thymine dimer, 5-thyminyl-5,6-dihydrothymine, i.e., the
92 ct lyase (SPL) repairs a covalent UV-induced thymine dimer, spore photoproduct (SP), in germinating e
95 s value is comparable to that of cyclobutane thymine dimers (the major UV-induced lesions) in genomic
96 nduces cyclobutane pyrimidine dimers, mainly thymine dimers (TTs), and pyrimidine (6-4) pyrimidone ph
99 de currents in osteoblasts, had no effect on thymine dimers on its own but prevented the 1,25(OH)(2)D
100 Exonuclease-deficient pol gamma bypassed thymine dimers with low relative efficiency; bypass was
102 IDS, at concentrations that had no effect on thymine dimers, blocked UVR-induced upregulation of p53.
103 oride currents help protect from UVR-induced thymine dimers, but further increases in p53 or reductio
109 vibrations) of cyclobutane thymine dimer and thymine dinucleotide radical anion, thymidylyl(3'-->5')t
110 rted nucleobase excision activities of human thymine DNA glycosylase (hTDG) toward duplex DNA substra
111 ipping assay to study damage search by human thymine DNA glycosylase (hTDG), which initiates BER of m
115 aC), with 5fC and 5caC subject to removal by thymine DNA glycosylase (TDG) in conjunction with base e
116 nd T:G mispair, and this step is followed by thymine DNA glycosylase (TDG) initiated base excision re
122 slocation (TET) enzymes (TET1/TET2/TET3) and thymine DNA glycosylase (TDG) play crucial roles in earl
123 g a panel of DNA demethylases, we found that thymine DNA glycosylase (TDG) up-regulated Wnt signaling
124 oxylcytosine (caC), excision of fC or caC by thymine DNA glycosylase (TDG), and restoration of cytosi
125 aC are selectively recognized and excised by thymine DNA glycosylase (TDG), leading to DNA demethylat
126 e bases are recognized by the monofunctional thymine DNA glycosylase (Tdg), which cleaves the glycosi
128 ollowed by replication-dependent dilution or thymine DNA glycosylase (TDG)-dependent base excision re
129 to cytosine through iterative oxidation and thymine DNA glycosylase (TDG)-mediated base excision rep
132 mination product of 5hmC could be excised by thymine DNA glycosylase and MBD4 glycosylases regardless
135 rvation was paralleled by a compromised TDG (thymine DNA glycosylase) and TET1 (ten-eleven translocat
136 CadC, and 5-HmdU, may be cleaved from DNA by thymine DNA glycosylase, and subsequent action of base-e
137 regeneration-associated genes in a Tet3- and thymine DNA glycosylase-dependent fashion in DRG neurons
139 paired to regenerate unmodified cytosines by thymine-DNA glycosylase (TDG) and base excision repair (
143 s not influenced by either UNG1/2, SMUG1, or thymine-DNA glycosylase knockdown, strongly suggesting t
144 n of UNG1/2 but not by knockdown of SMUG1 or thymine-DNA glycosylase uracil-DNA glycosylases, proving
145 rved that A3G favors adenines, cytosines and thymines flanking the cytosine dinucleotide target in un
146 nto double-strand breaks, using the released thymine for new initiations, whereas subsequent disinteg
148 glycosylases attain specificity for excising thymine from G.T, but not A.T, pairs remains largely unr
149 Initiating base excision repair, TDG removes thymine from mutagenic G .: T mispairs caused by 5-methy
151 MBD4 (methyl-CpG-binding domain IV) excises thymine from mutagenic G.T mispairs generated by deamina
152 thymine DNA glycosylase (TDG), which excises thymine from mutagenic G.T mispairs that arise by deamin
153 (T-Hg-T): in fact, Hg(2+) tends to bind two thymines, generating a T-Hg-T complex with a formation c
155 Here, we show that telomeric DNA containing thymine glycol (Tg), 8-oxo-7,8-dihydroguanine (8-oxoG),
156 dative DNA lesions, 8-oxoguanine (8oxoG) and thymine glycol (Tg), regulate the structural properties
158 capable of quantifying the rate of repair of thymine glycol in a variety of human cells with a high d
162 of this tract by adding adenines instead of thymines had similar effects, while the addition of othe
166 emical biosensor is developed by integrating thymine-Hg(2+)-thymine (T-Hg(2+)-T) base pairs for the h
168 ble-stranded DNA due to the formation of the thymine-Hg(2+)-thymine complex, which holds the Hg(2+) i
169 sensors through the formation of the complex Thymine-Hg-Thymine (T-Hg-T): in fact, Hg(2+) tends to bi
170 ement of the fluorine substituent with H6 of thymine, however, with a distance that is relatively lon
173 -DAT interaction inhibits crystallization of thymine in microdomains and lamellar structuration.
174 or the Raman red shifts of phenylalanine and thymine in response to (13)C-labeling is proposed in thi
175 with significantly more cytosines mutated to thymine in the lagging-strand template (LGST) than in th
177 thyluracil, is an epigenetic modification of thymine in the nuclear DNA of flagellated protozoa of th
178 demonstrated that O-linked glucosylation of thymine in trypanosome DNA (base J) regulates polymerase
181 jor types of cycloadditions between adjacent thymines in DNA leading to cyclobutane dimers (T<>Ts) an
183 Sequencing of the katA gene demonstrated a thymine insertion leading to a frameshift mutation and p
186 light damages DNA by converting two adjacent thymines into a thymine dimer which is potentially mutag
187 a small molecule, cyanuric acid, with three thymine-like faces, reprogrammes the assembly of unmodif
188 es has been used as a tool to populate upper thymine-like triplet states via intramolecular sensitiza
191 e-pair steps with thymine versus uracil, the thymine methyl group tends to enhance the strength of th
196 o-chemical properties of DNA produced by the thymine modifications may have implications for recognit
197 te nanopores, short DNA fragments containing thymine modifications were found to exhibit distinct, re
198 hemical method to selectively tag and enrich thymine modifications, 5-formyluracil (5-fU) and 5-hydro
200 ns were chromatographically determined using thymine-modified complements that increase the overall c
203 e also show that the predominant cytosine-to-thymine mutations observed in single-cell genomics often
205 e, with the substitution of a cytosine for a thymine nucleotide (C64T) at codon 22, leading to a prem
206 o one-electron oxidized thymidine (dThd) and thymine nucleotides in basic aqueous glasses is investig
209 lesion, the most common oxidation product of thymine, occurs via two alternative pathways, in one of
211 ng the duplex length and mutating the fourth thymine of the continuous sequence of thymines to cytosi
212 corporated a guanine residue opposite the 3'-thymine of the dimer only 4-fold less efficiently than i
215 e (TDG) excises the mismatched base, uracil, thymine or 5-hydroxymethyluracil (5hmU), as well as remo
216 ly recognizes the Watson-Crick polar edge of thymine or 5hmU via the O2, N3 and O4 atoms, thus restri
217 odified phosphoramidites carrying additional thymine or adenine attached to the 2'-position of arabin
219 he neutral loss of a base (guanine, adenine, thymine, or cytosine) was added to the original methodol
224 we investigated the role of a homopolymeric thymine [poly(T)] tract -50 to -33 relative to the sabA
225 ce is slightly greater for binding at the 5' thymine position than at the 3' thymine position, presum
226 ng at the 5' thymine position than at the 3' thymine position, presumably because of stabilization ar
227 ynamically favored over dGTP binding at both thymine positions of the TTD, most likely due to more pe
229 tyl)-3-O-nosyl-2-deoxy-beta-D-lyxofuranosyl] thymine precursor on the EWOD chip starting from the fir
231 revealed three metabolites (6% of Tp dose): thymine propenoate and two mercapturate derivatives of g
232 a conserved cysteine donates a H atom to the thymine radical, resulting in a putative thiyl radical.
234 10 melamine rings, which provide a bifacial thymine-recognition interface along the length of the 21
235 ther base reduced the blockage, cytosine and thymine reduced the blockage more significantly than ade
236 thymidine depletion, and supplying exogenous thymine rescues both nucleotide levels and cell prolifer
237 ethylated cytosine occupies one of the inner thymine residues corresponding to the AP-1 element, resu
238 Therefore, the SP structure where the two thymine residues maintain a stacked conformation likely
240 tigation of DNA containing methyl-deuterated thymine reveals a large isotope effect establishing that
242 er the activity of Exo III toward a designed thymine-rich DNA oligonucleotide (e-T-rich probe) by the
247 ow demonstrate recombinant JBP1 hydroxylates thymine specifically in the context of dsDNA in a Fe(2+)
248 lity of GM-strains of Bacteroides to survive thymine starvation and overcome it through the exchange
249 e and origin-proximal DNA degradation during thymine starvation have now been quantified via whole-ge
253 we show that replication slowly continues in thymine-starved cells, but the newly synthesized DNA bec
255 C3A (A3A) efficiently deaminates both MeC to thymine (T) and normal C to uracil (U) in single-strande
257 quence d(TG4T) contains only guanine (G) and thymine (T) bases and has medical and nanotechnological
259 iro-oxetanoribonucleosides of uracil (U) and thymine (T) in 37 and 45% overall yields, respectively.
260 otentially mutagenic mispairs of uracil (U), thymine (T) or 5-hydroxymethyluracil (hmU) with guanine
261 he length (6, 10, or 14 bases) and identity (thymine (T) or adenine (A)) of the spacer connecting the
264 (Adenine (A), Guanine (G), Cytosine (C), and Thymine (T)) on single-stranded DNA (ssDNA) and double-s
268 difluorotoluene (F), a low-polarity mimic of thymine (T), to form a hydrogen-bonded complex with aden
271 ng, we introduced multiple Hg binding units (thymine (T)-T pairs) in a molecular trawl made of two po
272 r is developed by integrating thymine-Hg(2+)-thymine (T-Hg(2+)-T) base pairs for the high selectivity
274 ough the formation of the complex Thymine-Hg-Thymine (T-Hg-T): in fact, Hg(2+) tends to bind two thym
276 icient at mutating 5-methylcytosine (5mC) to thymine than APOBEC3A in a genetic assay and was at leas
278 seq), unmodified C, 5fC and 5caC are read as thymine; thus 5fC and 5caC cannot be distinguished from
280 study the interactions of Hg(2+) ions with a thymine-thymine (T-T) mismatch in Watson-Crick base-pair
282 le against skin cancer caused by cyclobutane thymine-thymine dimers (TTDs), a frequent form of DNA da
284 xy group by the conjugate base of adenine or thymine to give two diastereomeric C3'(S) and C3'(R) der
285 This degradation apparently releases enough thymine to sustain initiation of new replication bubbles
286 fourth thymine of the continuous sequence of thymines to cytosine or guanine significantly, and somet
289 adenine moieties of Poly A nanocapsules and thymine/uracil does not affect the fluorescence of poly
290 d O4 atoms, thus restricting its activity to thymine/uracil-based modifications while excluding cytos
293 seq, both cytosines and 5mCs are read out as thymines, whereas only 4mCs are read out as cytosines, r
294 es unmethylated cytosines to be sequenced as thymine, which allows methylation levels to reflected in
295 higher than that one of the coupling Adenine-Thymine, which can be employed for a selective, fast and
296 first guanine and the next two guanines by a thymine, which forms a single-residue bulge and is proje
297 with a 10-nucleotide ssDNA composed of poly-thymine, which reveals a novel positively charged nuclei
298 duplex and contains a continuous sequence of thymines, which is the pause signal for RNA polymerase I
299 t, we noted the hydantoin ring of dGh mimics thymine, while the iminohydantoin ring of dIa mimics cyt
300 ransfer excited states involving two stacked thymines, whose fingerprint is detected in the fluoresce
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