ライフサイエンスコーパス: tiling

1 iling, revealing an additional mechanism for tiling.

2 et protocol and efficient server-based image tiling.

3 long-standing theoretical studies on random tiling.

4 pidermal cells and in dendrite branching and tiling.

5 embles into a two-dimensional rhombus random tiling.

6 ates self-avoidance, whereas Dscam2 mediates tiling.

7 rtening of filopodia, and errors in cellular tiling.

8 be described via an icosahedrally symmetric tiling.

9 t DSCAM functions in both self-avoidance and tiling.

10 eyond the complexity observed in Archimedean tiling.

11 tic territories that show little overlap, or tiling.

12 estriction of terminals to single columns as tiling.

13 rystalline structure mapped upon the Penrose tiling.

14 ontact-mediated dendritic self-avoidance and tiling.

15 fficulties with the replication of spherical tiling.

16 baxonal domain-a phenomenon we term synaptic tiling.

17 ne protein Turtle, a key regulator of axonal tiling.

18 ) addition site using oligonucleotide arrays tiling 1% of the human genome.

19 The 2DP is considered to be a tiling, a mathematical approach that facilitates structu

20 We created a pool of sgRNAs, tiling across all possible target sites of a panel of si

21 to produce a minimal amplicon set capable of tiling across the specified target regions.

22 y to instead capture candidate CREs, thereby tiling across the targeted regions and markedly increasi

23 Furthermore, an array of sgRNAs tiling along the target locus enables the visualization

24 n C-type Pcdh isoform is required for axonal tiling and assembly of serotonergic circuitries.

25 We analyse the geometry of the experimental tiling and discuss factors relevant for the stabilizatio

26 We draw parallels between the molecular tiling and dynamically arrested systems, such as glasses

27 n serotonergic neurons disrupts local axonal tiling and global assembly of serotonergic circuitries a

28 Here, using an original hybrid tiling and splice junction microarray that includes alte

29 trate a framework for programming random DNA tilings and show how to control the properties of global

30 etween dynamic arrest in this type of random tilings and that of structural glasses.

31 observed in the Fibonacci sequence, Penrose tiling, and quasicrystals is a well-known example.

32 nd cessation of growth, territory formation, tiling, and self-avoidance requires a quantitative compa

33 The use of gene, tiling, and tissue microarrays together gives a comprehe

34 ur results show that the high-resolution ASO-tiling approach can identify cis-elements that modulate

35 Assembling dCas9 with an array of sgRNAs tiling arbitrary target loci, we were able to visualize

36 The tilings are energetically stabilized with binding energi

37 Archimedean tilings are periodic polygonal tessellations that are cr

38 matin immunoprecipitation followed by genome tiling array analysis (ChIP-chip) as the preferred appro

39 of the miRNA biogenesis pathway followed by tiling array analysis.

40 the false proportion of binding intervals in tiling array analysis.

41 ay donkey (Equus asinus) using a whole-exome tiling array and the array comparative genomic hybridiza

42 Here, we use a high-resolution promoter tiling array approach to analyze DNA methylation in brea

43 Using a genome tiling array approach, we simultaneously measured the ex

44 al. use chromatin immunoprecipitation (ChIP) tiling array assays (ChIP-chip) to show that physical in

45 rformed chromatin immunoprecipitation (ChIP) tiling array assays (ChIP-chip) with a number of circadi

46 By high-resolution tiling array CGH, the smallest common deletion targeted

47 and can increase the effective resolution of tiling array data by a factor of 5x or better.

48 predicted gene models, ESTs and whole-genome tiling array data representing several developmental sta

49 nscripts were larger than predicted from the tiling array data.

50 of differentially enriched regions (DERs) in tiling array data.

51 Genome-wide tiling array experiments are increasingly used for the a

52 We report on chromatin immunoprecipitation-tiling array experiments to globally map binding sites f

53 Methods to improve tiling array expression signals are needed to accurately

54 A custom tiling array for CGH (244,000 probes, 200 bp tiling reso

55 of plant centromeres, we developed a genomic tiling array for four fully sequenced rice (Oryza sativa

56 matin immunoprecipitation followed by genome tiling array hybridization (ChIP-chip) is a powerful app

57 ith high-throughput sequencing (ChIP-seq) or tiling array hybridization (ChIP-chip) is increasingly u

58 raries were hybridized to an oligonucleotide tiling array of the Salmonella genome.

59 rious concentrations were hybridized to four tiling array platforms by eight independent groups.

60 chip data sets collected on widely different tiling array platforms for two different organisms (Sacc

61 we conducted the first objective analysis of tiling array platforms, amplification procedures, and si

62 ating publicly available data sets to remove tiling array probe effects.

63 This accumulation allows a comparison of tiling array signals of RNA from the debranching mutant

64 Large-scale cDNA sequencing projects and tiling array studies have revealed the presence of many

65 Tiling array studies indicated that fbn-1 mRNA processin

66 lling the false positive rate in genome-wide tiling array studies is very important, because the numb

67 Applying DES to ChIP-chip tiling array study for discovering genome-wide protein-b

68 A genome-wide ChIP-chip tiling array study requires millions of simultaneous com

69 Here we have employed a genomewide tiling array to examine the lytic transcriptome of the K

70 Individual probes on an Affymetrix tiling array usually behave differently.

71 imately 1% of the narrow peaks detected on a tiling array were missed by ChIP-seq.

72 Through the use of a high-density genomic tiling array, we generated DNA and histone methylation p

73 Using a peptide tiling array, we identified novel peptides within the fi

74 nd, we designed and implemented a customized tiling array, which enabled genome-wide, strand-specific

75 ls were identified using a whole genome KSHV tiling array.

76 ancouver (Van), using a new high-density SNP-tiling array.

77 lysis using anti-ORF57 antibodies and a KSHV tiling array.

78 tin Immunoprecipitation (ChIP) followed by a tiling-array analysis.

79 We applied BASIS to a human tiling-array data set and a mouse RNA-seq data set.

80 th methods, hybridized them independently to tiling arrays (1% genome) and compared the data to have

81 immunoprecipitation coupled with Arabidopsis tiling arrays (ChIP-chip) and gene expression studies, w

82 immunoprecipitation in conjunction with DNA tiling arrays (ChIP-chip) revealed that genomic occupanc

83 tion (ChIP) and high-resolution whole-genome tiling arrays (ChIP-chip) that Nhp6A is localized to spe

84 Using custom tiling arrays (DNase-chip), we found unexpectedly many D

85 ults in both a spike-in experiment on ENCODE tiling arrays and an estrogen receptor ChIP-chip experim

86 identified by chromatin immunoprecipitation-tiling arrays and expression arrays.

87 led with recent developments in whole-genome tiling arrays and high-throughput next-generation sequen

88 by comparative hybridization to whole-genome tiling arrays and microarray-assisted bulk segregant ana

89 The inability of tiling arrays and RNA-Seq to count transcripts, rather t

90 with an original array design strategy using tiling arrays and statistical procedures that average in

91 Whole-genome oligonucleotide tiling arrays and tandem mass spectrometry identified tr

92 he genome using high-density oligonucleotide tiling arrays and then extended the TimEX method genome-

93 sing a ChIP-chip approach and the Affymetrix tiling arrays for Arabidopsis thaliana and found that ap

94 chipD has been used successfully to design tiling arrays for bacteria and yeast.

95 omatin immunoprecipitation coupled with KSHV tiling arrays identified the recruitment sites of the co

96 assessed by copy number analysis in 95, and tiling arrays in 65.

97 We have used tiling arrays in combination with the methylated CpG isl

98 precipitation assays applied to human genome tiling arrays in conjunction with RNA microarray reveale

99 g a spike-in experiment on Affymetrix ENCODE tiling arrays in the presence of simulated blobs coverin

100 sing anti-O-GlcNAc ChIP-on-chip whole-genome tiling arrays on wild-type and mutant strains, we detect

101 omatin immunoprecipitation combined with DNA tiling arrays or high-throughput sequencing (ChIP-chip a

102 principle be extended to other exon arrays, tiling arrays or splice junction arrays.

103 sequencing technologies and high-resolution tiling arrays provide an unprecedented opportunity to co

104 opy number changes of loci genome-wide using tiling arrays revealed terminal deletions extending up t

105 ChIP-chip tiling arrays revealed that levels of all degrees of gen

106 We designed high-density tiling arrays spanning all predicted segmental duplicati

107 ulate snoRNA formation, we used high-density tiling arrays to analyze transcripts in paf1Delta cells

108 nic 'dark matter' transcription was found by tiling arrays to be pervasive, it was seen to contribute

109 We used transcriptome sequencing and tiling arrays to compare lncRNA expression in epidermal

110 is (ChIP-chip) experiments with whole-genome tiling arrays to compare Su(Hw), dCTCF, boundary element

111 We used high-density full-genome tiling arrays to create a fine-scale genomic map of copy

112 oprecipitation along with Drosophila genomic tiling arrays to define potential targets of the glial t

113 Here, we use high resolution tiling arrays to examine the contributions of two genera

114 We used tiling arrays to identify highly differentiated regions

115 tical strategy using customized high-density tiling arrays to investigate coordinated patterns of gen

116 matin immunoprecipitation linked to promoter tiling arrays to profile H3 lysine-9 acetylation (H3K9Ac

117 Here, we use whole-genome tiling arrays to show that a wide spectrum of genes and

118 probes on the Affymetrix whole human genome tiling arrays to the entire genome in less than 6 CPU ho

119 rescue system as well as through the use of tiling arrays we detected the SCL/TAL1, LMO2, Ldb1, E2A

120 ated regions that could be identified on the tiling arrays were associated with genes.

121 Here high-resolution tiling arrays were used to define how perturbed TBP dyna

122 chnical platforms, including strand-specific tiling arrays, Agilent custom expression arrays, strand-

123 Genomic tiling arrays, cDNA sequencing and, more recently, RNA-S

124 5R human adrenocortical cells using promoter tiling arrays, leading to the identification of 445 gene

125 When hybridized to ENCODE tiling arrays, these libraries illuminated 15.3%, 16.4%,

126 q), supplemented with data from high-density tiling arrays, to globally sample transcripts of the fis

127 identified by hybridization to high-density tiling arrays, validated by quantitative PCR, and tested

128 Utilizing whole-genome tiling arrays, we analyzed the transcription across the

129 Using genome-wide Tiling arrays, we demonstrated that only a small proport

130 ssay, MIRA) in combination with whole-genome tiling arrays, we have characterized by MIRA-chip the en

131 ecipitation (ChIP) coupled with whole genome tiling arrays, we identified 5299 genomic regions of PPA

132 Using tiling arrays, we show that many unspliced yeast pre-mRN

133 Here, using oligonucleotide tiling arrays, we show that, at the anaphase, nearly all

134 DNA oligonucleotide probes for high-density tiling arrays, which can be used in a number of genomic

135 bound RNAs by hybridization to whole-genome tiling arrays.

136 fferent cells and developmental stages using tiling arrays.

137 by hybridization to Arabidopsis whole genome tiling arrays.

138 21 sub-regions, mapped by 3.5 kbp-resolution tiling arrays.

139 ybridizing the RNA molecules to RNA-specific tiling arrays.

140 tremely large number of individual probes on tiling arrays.

141 osomes using high-resolution oligonucleotide tiling arrays.

142 s for evaluating statistical significance in tiling arrays.

143 te and subtropical populations to Affymetrix tiling arrays.

144 stical significance in genome-wide ChIP-chip tiling arrays.

145 r ChIP-chip experiment on whole human genome tiling arrays.

146 scovered, identified only through the use of tiling arrays.

147 fication mutants in a Deltarrp6 strain using tiling arrays.

148 pitation and hybridization to human promoter tiling arrays.

149 na tabacum was determined using whole genome tiling arrays.

150 , using fragments of (3(3).4(2)) Archimedean tiling as the 'wetting layer' between the periodic and a

151 Finally, the design of the quasicrystalline tilings as platelets in nematic liquid crystals is inher

152 plates self-assemble into long-range ordered tilings at the liquid-air interface formed by a hexane w

153 synapse-free axonal segment, delineating the tiling border.

154 achieved in the form of original Penrose P1 tiling by using pentagonal colloidal platelets in layers

155 hromatin affinity precipitation coupled with tiling chip (ChAP-chip) and ChAP followed by quantitativ

156 iant (CNV) prediction pipelines and an exome-tiling chromosomal microarray were also applied to ident

157 Tiling clones are transfected into specific cell types t

158 n this, we propose a measure (the spike time tiling coefficient) to replace the correlation index.

159 novel measure of correlation-the spike time tiling coefficient.

160 We used genome-wide tiling comparative genomic hybridization and single nucl

161 ding the semiregular Archimedean snub square tiling could be fabricated.

162 Tiling data had higher coverage than shotgun proteomics

163 e systems is via the propagation-reaction of tiling defects, giving rise to dynamic heterogeneity.

164 correlations punctuated by sparse localized tiling defects.

165 ghput method, cis-regulatory element scan by tiling-deletion and sequencing (CREST-seq), for the unbi

166 We term this approach "binning" or "tiling" depending on the type of m/z window utilized.

167 the form of partial matching rules reducing tiling disorder.

168 ranged in a circuit-specific manner and that tiling does not apply universally across brain regions a

169 ry of quasicrystals, where aperiodic Penrose tilings enjoy 5-fold and 10-fold local symmetries.

170 on studies with repetitive and nonrepetitive tiling error we show that both algorithms are only remov

171 irst derive an extreme member of this unique tiling family by showing that the "holes" in the optimal

172 at deeply scan across a targeted region in a tiling fashion ("ScanDel").

173 Specifically, we report a random tiling formed in a two-dimensional molecular network of

174 These tilings generally possess 2,068 distinct concave tiling

175 ion, and number per individual, cumulatively tiling >99% of the genome, with an average of 10 indels

176 This tiling has 694 distinct concave (i.e., nonconvex) repeat

177 Using ChIP and tiling human promoter arrays, we found that activation o

178 om shading and texture flows, as well as the tiling hypothesis of the visual space for different curv

179 tical to Archimedean 4.8(2)-truncated square tiling, i.e. a mosaic of tetragons and octagons.

180 further allow for hierarchical substitution tiling, i.e., hierarchical pentagulation.

181 and the facet is built from MSM0272 hexamers tiling in the outer layer of the shell.

182 sterior parietal cortex coded information by tiling in time neurons that were transiently informative

183 x molecules and may be mapped onto a rhombus tiling in which an ordered array of vertices is embedded

184 This tiling is close to ideal, displaying long-range correlat

185 f a random, entropically stabilized, rhombus tiling is described.

186 entral to our design of the quasicrystalline tilings is the symmetry breaking imposed by the platelet

187 ns across the palmar surface of the hand and tiling it with receptors at their known densities, we re

188 examples of one-, two- and three-dimensional tilings/layerings.

189 performance by using a real-time adjustable tiling light sheet and creating a flexible compromise be

190 Tiling light-sheet selective plane illumination microsco

191 dendritic domains through self-avoidance and tiling mechanisms.

192 By using an antisense oligonucleotide (ASO)-tiling method, we systematically screened the proximal i

193 small effect size is a necessary feature of tiling microarray 'peak' finding algorithms, as cellular

194 atin immunoprecipitation (ChIP) coupled with tiling microarray (chip) experiments have been used in a

195 nt years, from hybridization with spotted or tiling microarray (ChIP-chip), to pair-end tag sequencin

196 ere initially identified using an intergenic tiling microarray and were confirmed by northern blottin

197 sting sequence-based normalizations from the tiling microarray literature.

198 High density tiling microarray profiles of these NusA mutants reveale

199 Here we used a genomic tiling microarray to screen transcripts from four chromo

200 opsis thaliana using ChIP and a high-density tiling microarray, and integrated this with previous map

201 script (ALT) lncRNA was discovered by genome-tiling microarray.

202 ,257 of which were further validated using a tiling microarray.

203 idized to a high-density DNA oligonucleotide tiling microarray.

204 ChIP) analysis in Arabidopsis using a genome tiling microarray.

205 rphism detection accuracy of a high-density 'tiling' microarray with 2.56 million probes by comparing

206 atin immunoprecipitation (ChIP) coupled with tiling microarrays (ChIP-chip) to determine the genomic

207 d chromatin immunoprecipitation coupled with tiling microarrays (ChIP-chip) to determine the genomic

208 r, a systematic screen using high-resolution tiling microarrays allowed us to identify a group of gen

209 We used high-resolution tiling microarrays and 5' RNA sequencing to identify tra

210 Here we used RNA-Seq, tiling microarrays and cDNA sequencing to explore the tr

211 genomic DNA from each strain to whole-genome tiling microarrays and detected 1.89 million single nucl

212 Whole-genome tiling microarrays can be employed for a myriad of purpo

213 ion signals detected by high-density genomic tiling microarrays contain comprehensive transcriptomic

214 robe sequence composition on the efficacy of tiling microarrays for identifying novel transcription a

215 Tiling microarrays have proven to be a valuable tool for

216 The advent of exon and tiling microarrays means that researchers now have the c

217 eaf tissue are hybridized to oligonucleotide tiling microarrays of the plastid ORFeome and report the

218 d by chromatin immunoprecipitation to genome tiling microarrays to construct a genome-wide map of BEA

219 d the protocol together with AGRONOMICS1 DNA tiling microarrays to establish genome-wide DNase I sens

220 parasitism may be derived through the use of tiling microarrays to establish high resolution, genome-

221 Here, we report the use of tiling microarrays to map 1358 S/MARs on Arabidopsis tha

222 Using tiling microarrays to map 5hmC levels in DNA from normal

223 We used tiling microarrays to show that nucleosomes are, in fact

224 ractions is chromatin immunoprecipitation on tiling microarrays, commonly known as ChIP-chip.

225 ts were analyzed by genome-wide high-density tiling microarrays, DNA sequencing, and copy number vari

226 Using genome-tiling microarrays, we mapped DNA methylation in mutant

227 sive evaluation of HOX gene expression using tiling microarrays, with validation, showed that distant

228 d accumulated unspliced pre-mRNAs by genomic tiling microarrays.

229 on coupled with high-resolution whole genome-tiling microarrays.

230 exons predicted by computational methods or tiling microarrays.

231 ne edge rather than covering, suggesting the tiling model is better than the covering model for struc

232 show that some of the previously identified tiling mutants fail to confine dendrites in a 2D plane.

233 polymers-single-layered polymers that form a tiling network in exactly two dimensions-have potential

234 However, although random tiling networks are studied increasingly, their degree o

235 e two key amino acids, Lys-26 and Arg-79, on tiling, not only in the crystal lattice but also in the

236 of process nodes on opposite sides, compact tiling of members of molecular complexes and extensively

237 re, the authors demonstrate that dodecagonal tiling of mesoporous silica nanoparticles occurs via irr

238 age in homotypic interactions that result in tiling of neighboring cells before the establishment of

239 Sharpr-MPRA combines dense tiling of overlapping MPRA constructs with a probabilist

240 rahertz quantum-cascade laser with a Penrose tiling of pentagonal rotational symmetry, reaching 0.1-0

241 lustering, as we found evidence of dendritic tiling of PN dendrites.

242 tal is broken in sublayers, forming a random tiling of rectangles, large triangles and small triangle

243 nstance of pentagonal, two-dimensional Cairo-tiling of silicate tetrahedra in one of the new zeolite

244 oped for bootstrapping of time series and re-tiling of spatial data, to random networks.

245 The tiling of surfaces has long attracted the attention of s

246 rison and quantitative analysis suggest that tiling of the different dendritic subtrees of the same n

247 This ensures tiling of the lamina neuropil through heterotypic intera

248 This developmental tiling of transient neurites correlates with the emergen

249 f a noncountably infinite number of periodic tilings of whose smallest repeat tiling unit consists of

250 organizational feature of astrocytes is the "tiling" of the brain with non-overlapping territories.

251 Here we use tiling oligonucleotide microarrays, comprising 42 millio

252 Isolation by RNA Purification (ChIRP), where tiling oligonucleotides retrieve specific lncRNAs with b

253 ing cells, showing no evidence for dendritic tiling or inter-digitation consistent with homotypic rep

254 bridize zebra finch genomic DNA to a chicken tiling path microarray and identify CNVs in the zebra fi

255 A minimum tiling path of 66,772 minimally overlapping clones was d

256 quenced 15 622 BACs representing the minimal tiling path of 72 052 physical-mapped gene-bearing BACs.

257 ustom-designed genomic array consisting of a tiling path of BAC clones.

258 ence and fingerprints to determine a minimal tiling path of clones.

259 The MTP (minimal tiling path) module uses sequence and fingerprints to de

260 s, such as in this case gene-bearing minimum-tiling-path BAC clones.

261 Duroc genomic DNA on a pig X-chromosome BAC tiling-path microarray.

262 in their origin using a custom designed 4-Mb tiling-path oligonucleotide array CGH assay.

263 high-throughput sequencing and genomic array tiling paths.

264 method is used to identify minimum amplicon tiling paths.

265 The conservation of this tiling pattern in HER3 and HER4, which is the closest ev

266 We achieved two novel Archimedean tiling patterns, (4.8.8) and (3.6.3.6), and one pattern

267 es), can form honeycombs with highly complex tiling patterns, with cells of up to five different comp

268 d the densest known packings of the four non-tiling Platonic solids (the tetrahedron, octahedron, dod

269 cking, the densest packings of the other non-tiling Platonic solids that we obtain are their previous

270 one bipolar cells reveals that the dendritic tiling present in maturity is achieved secondarily, afte

271 As part of the tiling process, primer pairs are computationally screene

272 a continuous variety of length scales of the tiling, ranging over three orders of magnitude in the ty

273 DA9 motoneurons, we found that the synaptic tiling requires the PlexinA4 homolog, PLX-1, and two tra

274 performance characteristics that varied with tiling resolution and the number of replicates, which ha

275 tiling array for CGH (244,000 probes, 200 bp tiling resolution) was created to identify small regions

276 vely reduces dendritic crossing and restores tiling, revealing an additional mechanism for tiling.

277 AB(6) phase and the (3(2).4.3.4) Archimedean tiling shows the promise of further exploration on the s

278 an idealized hydrated chain was obtained by tiling space with (0.2 nm)(3) cubes and projecting the a

279 To amplify breakpoints with PCR, primers tiling specified target regions are carefully selected w

280 resent in every body segment, have dendrites tiling the larval body wall nearly completely without re

281 By tiling the mouse thalamus with 254 overlapping injection

282 pe local detectors that had receptive fields tiling the stimulus and were tuned to the two directions

283 cell types formed regular mosaics uniformly tiling the visual scene.

284 The approach, named 'Viral Tiling Theory', is inspired by the theory of quasicrysta

285 rsely distributed to permit complete retinal tiling, they lack a key feature of true ganglion cell ty

286 ents with complex particle handling modes by tiling this core element using multiple transformation o

287 ltonian complexity techniques with aperiodic tilings, to construct a Hamiltonian whose ground state e

288 ed the molecular basis of self-avoidance and tiling, two fundamental principles required for the form

289 of periodic tilings of whose smallest repeat tiling unit consists of one regular octahedron and six s

290 growth trajectories beginning with a single tiling unit.

291 athways of quasicrystalline materials, where tiling units arrange with local but no long-range order,

292 ngs generally possess 2,068 distinct concave tiling units, 62 of which are centrally symmetric.

293 ctahedra tiling, which only has two distinct tiling units.

294 ation and repression profiling with reporter tiling using MPRA (Sharpr-MPRA), that allows high-resolu

295 It was believed that such a tiling, which is the Delaunay tessellation of the face-c

296 lly richer than the fcc tetrahedra-octahedra tiling, which only has two distinct tiling units.

297 spatial periodicity similar to a triangular tiling with a corresponding well-defined hexagonal struc

298 s is established by mapping the problem into tiling with hexagonal tiles.

299 f two sizes, leading to a family of periodic tilings with units composed four small tetrahedra and tw

300 l viruses in this family can be described by tilings with vertices corresponding to subsets of a quas